> top > docs > PMC:2222968 > spans > 37783-38288 > annotations

PMC:2222968 / 37783-38288 JSONTXT

Annnotations TAB JSON ListView MergeView

2_test

Id Subject Object Predicate Lexical cue
18162042-10037236-84705061 248-250 10037236 denotes 62
T11976 248-250 10037236 denotes 62

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18793 0-9 JJ denotes Inducible
T18794 10-16 JJ denotes murine
T18795 17-21 NN denotes Treg
T18796 22-29 NN denotes culture
T18797 31-36 JJ denotes Naive
T18798 37-41 JJ denotes CD4+
T18799 42-43 NN denotes T
T18800 44-49 NN denotes cells
T18801 50-51 -LRB- denotes (
T18802 51-55 JJ denotes CD4+
T18803 55-56 -COMMA- denotes ,
T18804 57-63 JJ denotes CD62L+
T18805 63-64 -COMMA- denotes ,
T18806 65-68 CC denotes and
T18807 69-74 NN denotes CD25–
T18808 74-75 -RRB- denotes )
T18809 76-80 VB denotes were
T18810 81-89 VB denotes isolated
T18811 90-94 IN denotes from
T18812 95-101 VB denotes pooled
T18813 102-107 NN denotes lymph
T18814 108-113 NN denotes nodes
T18815 114-117 CC denotes and
T18816 118-125 NN denotes spleens
T18817 126-128 IN denotes by
T18818 129-133 NN denotes FACS
T18819 134-135 -LRB- denotes (
T18820 135-139 NNP denotes FACS
T18821 140-144 NNP denotes Aria
T18822 144-145 -COMMA- denotes ,
T18823 146-148 NNP denotes BD
T18824 149-160 NNP denotes Biosciences
T18825 160-161 -RRB- denotes )
T18826 163-164 CD denotes 5
T18827 165-166 IN denotes ×
T18828 167-170 CD denotes 105
T18829 171-172 NN denotes T
T18830 173-178 NN denotes cells
T18831 179-183 VB denotes were
T18832 184-195 VB denotes co-cultured
T18833 196-200 IN denotes with
T18834 201-204 CD denotes 2.5
T18835 205-206 -COLON- denotes ×
T18836 207-210 CD denotes 104
T18837 211-215 NN denotes bone
T18838 216-230 VB denotes marrow–derived
T18839 231-240 JJ denotes dendritic
T18840 241-246 NN denotes cells
T18841 247-248 -LRB- denotes [
T18842 248-250 CD denotes 62
T18843 250-251 -RRB- denotes ]
T18844 252-255 CC denotes and
T18845 256-260 CD denotes 0.01
T18846 261-266 NN denotes μg/ml
T18847 267-277 NN denotes OVA323–339
T18848 278-285 NN denotes peptide
T18849 286-287 -LRB- denotes (
T18850 287-294 NN denotes Ansynth
T18851 294-295 -RRB- denotes )
T18852 296-298 IN denotes in
T18853 299-302 DT denotes the
T18854 303-311 NN denotes presence
T18855 312-314 CC denotes or
T18856 315-322 NN denotes absence
T18857 323-325 IN denotes of
T18858 326-334 JJ denotes 20-ng/μl
T18859 335-343 NN denotes rhTGF-ß1
T18860 344-345 -LRB- denotes (
T18861 345-354 NN denotes Peprotech
T18862 354-355 -RRB- denotes )
T18863 356-358 IN denotes in
T18864 359-366 JJ denotes 48-well
T18865 367-373 NN denotes plates
T18866 375-380 IN denotes After
T18867 381-382 CD denotes 4
T18868 383-384 NN denotes d
T18869 384-385 -COMMA- denotes ,
T18870 386-391 NN denotes cells
T18871 392-396 VB denotes were
T18872 397-406 VB denotes harvested
T18873 407-410 CC denotes and
T18874 411-419 VB denotes analyzed
T18875 420-423 IN denotes for
T18876 424-437 JJ denotes intracellular
T18877 438-443 NN denotes FOXP3
T18878 444-454 NN denotes expression
T18879 455-457 IN denotes by
T18880 458-462 NN denotes FACS
T18881 463-465 CC denotes or
T18882 466-470 NN denotes gene
T18883 471-481 NN denotes expression
T18884 482-484 IN denotes by
T18885 485-497 JJ denotes quantitative
T18886 498-504 NN denotes RT-PCR
R14159 T18796 T18793 arg1Of culture,Inducible
R14160 T18796 T18794 arg1Of culture,murine
R14161 T18796 T18795 arg1Of culture,Treg
R14162 T18800 T18797 arg1Of cells,Naive
R14163 T18800 T18798 arg1Of cells,CD4+
R14164 T18800 T18799 arg1Of cells,T
R14165 T18800 T18801 arg1Of cells,(
R14166 T18800 T18809 arg1Of cells,were
R14167 T18800 T18810 arg2Of cells,isolated
R14168 T18802 T18803 arg1Of CD4+,","
R14169 T18803 T18806 arg1Of ",",and
R14170 T18804 T18803 arg2Of CD62L+,","
R14171 T18806 T18801 arg2Of and,(
R14172 T18806 T18805 arg1Of and,","
R14173 T18807 T18806 arg2Of CD25–,and
R14174 T18808 T18801 arg3Of ),(
R14175 T18810 T18809 arg2Of isolated,were
R14176 T18810 T18811 arg1Of isolated,from
R14177 T18814 T18812 arg2Of nodes,pooled
R14178 T18814 T18813 arg1Of nodes,lymph
R14179 T18814 T18815 arg1Of nodes,and
R14180 T18815 T18811 arg2Of and,from
R14181 T18815 T18817 arg1Of and,by
R14182 T18816 T18815 arg2Of spleens,and
R14183 T18818 T18817 arg2Of FACS,by
R14184 T18818 T18819 arg1Of FACS,(
R14185 T18821 T18819 arg2Of Aria,(
R14186 T18821 T18820 arg1Of Aria,FACS
R14187 T18821 T18822 arg1Of Aria,","
R14188 T18824 T18822 arg2Of Biosciences,","
R14189 T18824 T18823 arg1Of Biosciences,BD
R14190 T18825 T18819 arg3Of ),(
R14191 T18828 T18827 arg1Of 105,×
R14192 T18830 T18826 arg1Of cells,5
R14193 T18830 T18828 arg1Of cells,105
R14194 T18830 T18829 arg1Of cells,T
R14195 T18830 T18831 arg1Of cells,were
R14196 T18830 T18832 arg2Of cells,co-cultured
R14197 T18832 T18831 arg2Of co-cultured,were
R14198 T18832 T18833 arg1Of co-cultured,with
R14199 T18832 T18852 arg1Of co-cultured,in
R14200 T18837 T18835 arg1Of bone,×
R14201 T18837 T18836 arg1Of bone,104
R14202 T18838 T18837 arg1Of marrow–derived,bone
R14203 T18840 T18834 arg1Of cells,2.5
R14204 T18840 T18838 arg1Of cells,marrow–derived
R14205 T18840 T18839 arg1Of cells,dendritic
R14206 T18840 T18841 arg1Of cells,[
R14207 T18840 T18844 arg1Of cells,and
R14208 T18842 T18841 arg2Of 62,[
R14209 T18843 T18841 arg3Of ],[
R14210 T18844 T18833 arg2Of and,with
R14211 T18848 T18844 arg2Of peptide,and
R14212 T18848 T18845 arg1Of peptide,0.01
R14213 T18848 T18846 arg1Of peptide,μg/ml
R14214 T18848 T18847 arg1Of peptide,OVA323–339
R14215 T18848 T18849 arg1Of peptide,(
R14216 T18850 T18849 arg2Of Ansynth,(
R14217 T18851 T18849 arg3Of ),(
R14218 T18854 T18855 arg1Of presence,or
R14219 T18855 T18852 arg2Of or,in
R14220 T18855 T18853 arg1Of or,the
R14221 T18855 T18857 arg1Of or,of
R14222 T18856 T18855 arg2Of absence,or
R14223 T18859 T18857 arg2Of rhTGF-ß1,of
R14224 T18859 T18858 arg1Of rhTGF-ß1,20-ng/μl
R14225 T18859 T18860 arg1Of rhTGF-ß1,(
R14226 T18859 T18863 arg1Of rhTGF-ß1,in
R14227 T18861 T18860 arg2Of Peprotech,(
R14228 T18862 T18860 arg3Of ),(
R14229 T18865 T18863 arg2Of plates,in
R14230 T18865 T18864 arg1Of plates,48-well
R14231 T18868 T18866 arg2Of d,After
R14232 T18868 T18867 arg1Of d,4
R14233 T18870 T18871 arg1Of cells,were
R14234 T18870 T18872 arg2Of cells,harvested
R14235 T18870 T18874 arg2Of cells,analyzed
R14236 T18872 T18873 arg1Of harvested,and
R14237 T18873 T18866 arg1Of and,After
R14238 T18873 T18869 arg1Of and,","
R14239 T18873 T18871 arg2Of and,were
R14240 T18874 T18873 arg2Of analyzed,and
R14241 T18874 T18875 arg1Of analyzed,for
R14242 T18878 T18875 arg2Of expression,for
R14243 T18878 T18876 arg1Of expression,intracellular
R14244 T18878 T18877 arg1Of expression,FOXP3
R14245 T18878 T18879 arg1Of expression,by
R14246 T18878 T18884 arg1Of expression,by
R14247 T18880 T18881 arg1Of FACS,or
R14248 T18882 T18881 arg2Of gene,or
R14249 T18883 T18879 arg2Of expression,by
R14250 T18883 T18880 arg1Of expression,FACS
R14251 T18883 T18882 arg1Of expression,gene
R14252 T18886 T18884 arg2Of RT-PCR,by
R14253 T18886 T18885 arg1Of RT-PCR,quantitative

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18896 0-9 JJ denotes Inducible
T18897 10-16 NN denotes murine
T18898 17-21 NNP denotes Treg
T18899 22-29 NN denotes culture
T18900 29-30 . denotes .
T18901 31-36 JJ denotes Naive
T18902 37-40 NNP denotes CD4
T18903 40-41 CD denotes +
T18904 42-43 NNP denotes T
T18905 44-49 NNS denotes cells
T18906 50-51 -LRB- denotes (
T18907 51-54 CD denotes CD4
T18908 54-55 NN denotes +
T18909 55-56 , denotes ,
T18910 57-62 NNP denotes CD62L
T18911 62-63 NNP denotes +
T18912 63-64 , denotes ,
T18913 65-68 CC denotes and
T18914 69-73 NNP denotes CD25
T18915 74-75 -RRB- denotes )
T18916 76-80 VBD denotes were
T18917 81-89 VBN denotes isolated
T18918 90-94 IN denotes from
T18919 95-101 VBN denotes pooled
T18920 102-107 NN denotes lymph
T18921 108-113 NNS denotes nodes
T18922 114-117 CC denotes and
T18923 118-125 NNS denotes spleens
T18924 126-128 IN denotes by
T18925 129-133 NNP denotes FACS
T18926 134-135 -LRB- denotes (
T18927 135-139 NNP denotes FACS
T18928 140-144 NNP denotes Aria
T18929 144-145 , denotes ,
T18930 146-148 NNP denotes BD
T18931 149-160 NNP denotes Biosciences
T18932 160-161 -RRB- denotes )
T18933 161-162 . denotes .
T18934 163-164 CD denotes 5
T18935 165-166 NN denotes ×
T18936 167-170 CD denotes 105
T18937 171-172 NNP denotes T
T18938 173-178 NNS denotes cells
T18939 179-183 VBD denotes were
T18940 184-195 VBN denotes co-cultured
T18941 196-200 IN denotes with
T18942 201-204 CD denotes 2.5
T18943 205-206 CD denotes ×
T18944 207-210 CD denotes 104
T18945 211-215 NN denotes bone
T18946 216-222 NN denotes marrow
T18947 223-230 VBN denotes derived
T18948 231-240 JJ denotes dendritic
T18949 241-246 NNS denotes cells
T18950 247-248 NNP denotes [
T18951 248-250 CD denotes 62
T18952 250-251 NNP denotes ]
T18953 252-255 CC denotes and
T18954 256-260 CD denotes 0.01
T18955 261-263 NN denotes μg
T18956 263-264 NN denotes /
T18957 264-266 NN denotes ml
T18958 267-273 NNP denotes OVA323
T18959 274-277 CD denotes 339
T18960 278-285 NN denotes peptide
T18961 286-287 -LRB- denotes (
T18962 287-294 NNP denotes Ansynth
T18963 294-295 -RRB- denotes )
T18964 296-298 IN denotes in
T18965 299-302 DT denotes the
T18966 303-311 NN denotes presence
T18967 312-314 CC denotes or
T18968 315-322 NN denotes absence
T18969 323-325 IN denotes of
T18970 326-331 JJ denotes 20-ng
T18971 331-332 NN denotes /
T18972 332-334 NN denotes μl
T18973 335-343 NN denotes rhTGF-ß1
T18974 344-345 -LRB- denotes (
T18975 345-354 NNP denotes Peprotech
T18976 354-355 -RRB- denotes )
T18977 356-358 IN denotes in
T18978 359-366 JJ denotes 48-well
T18979 367-373 NNS denotes plates
T18980 373-374 . denotes .
T18981 375-380 IN denotes After
T18982 381-382 CD denotes 4
T18983 383-384 LS denotes d
T18984 384-385 , denotes ,
T18985 386-391 NNS denotes cells
T18986 392-396 VBD denotes were
T18987 397-406 VBN denotes harvested
T18988 407-410 CC denotes and
T18989 411-419 VBN denotes analyzed
T18990 420-423 IN denotes for
T18991 424-437 JJ denotes intracellular
T18992 438-443 CD denotes FOXP3
T18993 444-454 NN denotes expression
T18994 455-457 IN denotes by
T18995 458-462 NNP denotes FACS
T18996 463-465 CC denotes or
T18997 466-470 NN denotes gene
T18998 471-481 NN denotes expression
T18999 482-484 IN denotes by
T19000 485-497 JJ denotes quantitative
T19001 498-504 NN denotes RT-PCR
T19002 504-505 . denotes .
R14254 T18896 T18899 amod Inducible,culture
R14255 T18897 T18898 compound murine,Treg
R14256 T18898 T18899 compound Treg,culture
R14257 T18899 T18899 ROOT culture,culture
R14258 T18900 T18899 punct .,culture
R14259 T18901 T18905 amod Naive,cells
R14260 T18902 T18905 nmod CD4,cells
R14261 T18903 T18905 nummod +,cells
R14262 T18904 T18905 compound T,cells
R14263 T18905 T18916 nsubj cells,were
R14264 T18906 T18905 punct (,cells
R14265 T18907 T18908 nummod CD4,+
R14266 T18908 T18905 appos +,cells
R14267 T18909 T18908 punct ",",+
R14268 T18910 T18911 compound CD62L,+
R14269 T18911 T18908 appos +,+
R14270 T18912 T18911 punct ",",+
R14271 T18913 T18911 cc and,+
R14272 T18914 T18911 conj CD25,+
R14273 T18915 T18905 punct ),cells
R14274 T18916 T18916 ROOT were,were
R14275 T18917 T18916 acomp isolated,were
R14276 T18918 T18917 prep from,isolated
R14277 T18919 T18921 amod pooled,nodes
R14278 T18920 T18921 compound lymph,nodes
R14279 T18921 T18918 pobj nodes,from
R14280 T18922 T18921 cc and,nodes
R14281 T18923 T18921 conj spleens,nodes
R14282 T18924 T18917 agent by,isolated
R14283 T18925 T18924 pobj FACS,by
R14284 T18926 T18928 punct (,Aria
R14285 T18927 T18928 compound FACS,Aria
R14286 T18928 T18916 npadvmod Aria,were
R14287 T18929 T18928 punct ",",Aria
R14288 T18930 T18931 compound BD,Biosciences
R14289 T18931 T18928 appos Biosciences,Aria
R14290 T18932 T18928 punct ),Aria
R14291 T18933 T18916 punct .,were
R14292 T18934 T18936 quantmod 5,105
R14293 T18935 T18936 quantmod ×,105
R14294 T18936 T18938 nummod 105,cells
R14295 T18937 T18938 compound T,cells
R14296 T18938 T18940 nsubjpass cells,co-cultured
R14297 T18939 T18940 auxpass were,co-cultured
R14298 T18940 T18940 ROOT co-cultured,co-cultured
R14299 T18941 T18940 prep with,co-cultured
R14300 T18942 T18944 quantmod 2.5,104
R14301 T18943 T18944 quantmod ×,104
R14302 T18944 T18946 nummod 104,marrow
R14303 T18945 T18946 compound bone,marrow
R14304 T18946 T18941 pobj marrow,with
R14305 T18947 T18949 amod derived,cells
R14306 T18948 T18949 amod dendritic,cells
R14307 T18949 T18946 appos cells,marrow
R14308 T18950 T18952 nmod [,]
R14309 T18951 T18952 nummod 62,]
R14310 T18952 T18949 appos ],cells
R14311 T18953 T18952 cc and,]
R14312 T18954 T18958 compound 0.01,OVA323
R14313 T18955 T18958 compound μg,OVA323
R14314 T18956 T18958 compound /,OVA323
R14315 T18957 T18958 compound ml,OVA323
R14316 T18958 T18952 conj OVA323,]
R14317 T18959 T18960 nummod 339,peptide
R14318 T18960 T18949 appos peptide,cells
R14319 T18961 T18962 punct (,Ansynth
R14320 T18962 T18960 appos Ansynth,peptide
R14321 T18963 T18949 punct ),cells
R14322 T18964 T18946 prep in,marrow
R14323 T18965 T18966 det the,presence
R14324 T18966 T18964 pobj presence,in
R14325 T18967 T18966 cc or,presence
R14326 T18968 T18966 conj absence,presence
R14327 T18969 T18968 prep of,absence
R14328 T18970 T18973 amod 20-ng,rhTGF-ß1
R14329 T18971 T18973 compound /,rhTGF-ß1
R14330 T18972 T18973 compound μl,rhTGF-ß1
R14331 T18973 T18969 pobj rhTGF-ß1,of
R14332 T18974 T18975 punct (,Peprotech
R14333 T18975 T18973 appos Peprotech,rhTGF-ß1
R14334 T18976 T18975 punct ),Peprotech
R14335 T18977 T18966 prep in,presence
R14336 T18978 T18979 amod 48-well,plates
R14337 T18979 T18977 pobj plates,in
R14338 T18980 T18940 punct .,co-cultured
R14339 T18981 T18987 mark After,harvested
R14340 T18982 T18987 meta 4,harvested
R14341 T18983 T18982 advmod d,4
R14342 T18984 T18987 punct ",",harvested
R14343 T18985 T18987 nsubjpass cells,harvested
R14344 T18986 T18987 auxpass were,harvested
R14345 T18987 T18987 ROOT harvested,harvested
R14346 T18988 T18987 cc and,harvested
R14347 T18989 T18987 conj analyzed,harvested
R14348 T18990 T18989 prep for,analyzed
R14349 T18991 T18993 amod intracellular,expression
R14350 T18992 T18993 nummod FOXP3,expression
R14351 T18993 T18990 pobj expression,for
R14352 T18994 T18993 prep by,expression
R14353 T18995 T18994 pobj FACS,by
R14354 T18996 T18995 cc or,FACS
R14355 T18997 T18998 compound gene,expression
R14356 T18998 T18993 conj expression,expression
R14357 T18999 T18993 prep by,expression
R14358 T19000 T19001 amod quantitative,RT-PCR
R14359 T19001 T18999 pobj RT-PCR,by
R14360 T19002 T18987 punct .,harvested

UBERON-AE

Id Subject Object Predicate Lexical cue
T18776 102-107 http://purl.obolibrary.org/obo/UBERON_0002391 denotes lymph
T18777 102-113 http://purl.obolibrary.org/obo/UBERON_0000029 denotes lymph nodes
T18778 118-125 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleens
T18779 211-222 http://purl.obolibrary.org/obo/UBERON_0002371 denotes bone marrow

GO-BP

Id Subject Object Predicate Lexical cue
T18791 466-481 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T18792 498-500 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

GO-MF

Id Subject Object Predicate Lexical cue
T19010 498-500 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

GO-CC

Id Subject Object Predicate Lexical cue
T19011 44-49 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T19012 173-178 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T19013 241-246 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T19014 386-391 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T19015 424-437 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T18787 0-30 Sentence denotes Inducible murine Treg culture.
T18788 31-162 Sentence denotes Naive CD4+ T cells (CD4+, CD62L+, and CD25–) were isolated from pooled lymph nodes and spleens by FACS (FACS Aria, BD Biosciences).
T18789 163-374 Sentence denotes 5 × 105 T cells were co-cultured with 2.5 × 104 bone marrow–derived dendritic cells [62] and 0.01 μg/ml OVA323–339 peptide (Ansynth) in the presence or absence of 20-ng/μl rhTGF-ß1 (Peprotech) in 48-well plates.
T18790 375-505 Sentence denotes After 4 d, cells were harvested and analyzed for intracellular FOXP3 expression by FACS or gene expression by quantitative RT-PCR.
T277 0-30 Sentence denotes Inducible murine Treg culture.
T278 31-162 Sentence denotes Naive CD4+ T cells (CD4+, CD62L+, and CD25–) were isolated from pooled lymph nodes and spleens by FACS (FACS Aria, BD Biosciences).
T279 163-374 Sentence denotes 5 × 105 T cells were co-cultured with 2.5 × 104 bone marrow–derived dendritic cells [62] and 0.01 μg/ml OVA323–339 peptide (Ansynth) in the presence or absence of 20-ng/μl rhTGF-ß1 (Peprotech) in 48-well plates.
T280 375-505 Sentence denotes After 4 d, cells were harvested and analyzed for intracellular FOXP3 expression by FACS or gene expression by quantitative RT-PCR.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T19044 37-40 Protein denotes CD4
T19045 51-54 Protein denotes CD4
T19046 57-62 Protein denotes CD62L
T19047 69-73 Protein denotes CD25
T19048 337-343 Protein denotes TGF-ß1
T19049 438-443 Protein denotes FOXP3
T19050 444-454 Gene_expression denotes expression true
R14366 T19049 T19050 themeOf FOXP3,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19016 37-41 Protein denotes CD4+
T19017 51-54 Protein denotes CD4
T19018 57-62 Protein denotes CD62L
T19019 69-74 Protein denotes CD25–
T19020 335-343 Protein denotes rhTGF-ß1
T19021 438-443 Protein denotes FOXP3
T19022 444-454 Gene_expression denotes expression
R14362 T19021 T19022 themeOf FOXP3,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T18780 37-40 Protein denotes CD4
T18781 51-54 Protein denotes CD4
T18782 57-62 Protein denotes CD62L
T18783 69-73 Protein denotes CD25
T18784 337-343 Protein denotes TGF-ß1
T18785 438-443 Protein denotes FOXP3
T18786 444-454 Gene_expression denotes expression true
R14158 T18785 T18786 themeOf FOXP3,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18887 37-40 P01730 denotes CD4
T18888 51-54 P01730 denotes CD4
T18889 57-62 P14151 denotes CD62L
T18890 69-73 P01589 denotes CD25
T18891 438-443 Q9BZS1 denotes FOXP3

test2

Id Subject Object Predicate Lexical cue Speculation
T18769 37-40 Protein denotes CD4 true
T18770 51-54 Protein denotes CD4
T18771 57-62 Protein denotes CD62L
T18772 69-73 Protein denotes CD25
T18773 340-343 Protein denotes -ß1
T18774 438-443 Protein denotes FOXP3
T18775 444-454 Gene_expression denotes expression
R14157 T18774 T18775 themeOf FOXP3,expression