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PMC:2222968 / 36199-37781 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
18162042-16387593-84705060 354-356 16387593 denotes 61
T86850 354-356 16387593 denotes 61

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18362 0-12 JJ denotes Quantitative
T18363 13-22 JJ denotes real-time
T18364 23-26 NNP denotes PCR
T18365 26-27 . denotes .
T18366 28-31 DT denotes The
T18367 32-35 NNP denotes PCR
T18368 36-43 NNS denotes primers
T18369 44-47 CC denotes and
T18370 48-54 NNS denotes probes
T18371 55-59 VBD denotes were
T18372 60-68 VBN denotes designed
T18373 69-74 VBN denotes based
T18374 75-77 IN denotes on
T18375 78-81 DT denotes the
T18376 82-91 NNS denotes sequences
T18377 92-100 VBD denotes reported
T18378 101-103 IN denotes in
T18379 104-111 NNP denotes GenBank
T18380 112-116 IN denotes with
T18381 117-120 DT denotes the
T18382 121-127 NNP denotes Primer
T18383 128-135 NNP denotes Express
T18384 136-144 NN denotes software
T18385 145-152 NN denotes version
T18386 153-156 CD denotes 1.2
T18387 157-158 -LRB- denotes (
T18388 158-165 NNP denotes Applied
T18389 166-176 NNPS denotes Biosystems
T18390 176-177 -RRB- denotes )
T18391 178-180 IN denotes as
T18392 181-188 VBZ denotes follows
T18393 188-189 : denotes :
T18394 190-195 CD denotes FOXP3
T18395 196-203 RB denotes forward
T18396 204-210 NN denotes primer
T18397 211-212 CD denotes 5
T18398 212-213 SYM denotes ′
T18399 213-214 : denotes -
T18400 214-217 NNP denotes GAA
T18401 218-221 NNP denotes ACA
T18402 222-225 NNP denotes GCA
T18403 226-229 NNP denotes CAT
T18404 230-233 NNP denotes TCC
T18405 234-237 NNP denotes CAG
T18406 238-241 NNP denotes AGT
T18407 242-246 JJ denotes TC-3
T18408 246-247 NN denotes ′
T18409 247-248 : denotes ;
T18410 249-254 CD denotes FOXP3
T18411 255-262 NN denotes reverse
T18412 263-269 NN denotes primer
T18413 270-271 CD denotes 5
T18414 271-272 SYM denotes ′
T18415 272-273 : denotes -
T18416 273-276 NNP denotes ATG
T18417 277-280 NNP denotes GCC
T18418 281-284 NNP denotes CAG
T18419 285-288 NNP denotes CGG
T18420 289-292 NNP denotes ATG
T18421 293-297 JJ denotes AG-3
T18422 297-298 NN denotes ′
T18423 298-299 : denotes ;
T18424 300-305 NNP denotes EF-1α
T18425 306-313 RB denotes forward
T18426 314-320 JJR denotes primer
T18427 321-324 CC denotes and
T18428 325-332 VB denotes reverse
T18429 333-339 NN denotes primer
T18430 340-342 IN denotes as
T18431 343-352 VBN denotes described
T18432 353-354 NNP denotes [
T18433 354-356 CD denotes 61
T18434 356-357 NNP denotes ]
T18435 357-358 : denotes ;
T18436 359-364 NNP denotes GATA3
T18437 365-372 RB denotes forward
T18438 373-379 JJR denotes primer
T18439 380-381 CD denotes 5
T18440 381-382 SYM denotes ′
T18441 382-383 : denotes -
T18442 383-386 NNP denotes GCG
T18443 387-390 NNP denotes GGC
T18444 391-394 NNP denotes TCT
T18445 395-398 NNP denotes ATC
T18446 399-402 NNP denotes ACA
T18447 403-406 NNP denotes AAA
T18448 407-412 CD denotes TGA-3
T18449 412-413 NN denotes ′
T18450 414-417 CC denotes and
T18451 418-421 NN denotes rwd
T18452 422-423 CD denotes 5
T18453 423-424 SYM denotes ′
T18454 424-425 : denotes -
T18455 425-428 NNP denotes GCT
T18456 429-432 NNP denotes CTC
T18457 433-436 NNP denotes CTG
T18458 437-440 NNP denotes GCT
T18459 441-444 NNP denotes GCA
T18460 445-448 NNP denotes GAC
T18461 449-454 JJ denotes AGC-3
T18462 454-455 NN denotes ′
T18463 455-456 . denotes .
T18464 457-460 DT denotes The
T18465 461-469 JJ denotes prepared
T18466 470-475 NNS denotes cDNAs
T18467 476-480 VBD denotes were
T18468 481-490 VBN denotes amplified
T18469 491-496 VBG denotes using
T18470 497-505 NNP denotes SYBR-PCR
T18471 506-515 NN denotes mastermix
T18472 516-517 -LRB- denotes (
T18473 517-523 NNP denotes Biorad
T18474 523-524 -RRB- denotes )
T18475 525-534 VBG denotes according
T18476 535-537 TO denotes to
T18477 538-541 DT denotes the
T18478 542-557 NNS denotes recommendations
T18479 558-560 IN denotes of
T18480 561-564 DT denotes the
T18481 565-577 NN denotes manufacturer
T18482 578-580 IN denotes in
T18483 581-583 DT denotes an
T18484 584-587 NNP denotes ABI
T18485 588-593 NNP denotes PRISM
T18486 594-598 CD denotes 7000
T18487 599-607 NNP denotes Sequence
T18488 608-617 NNP denotes Detection
T18489 618-624 NNP denotes System
T18490 625-626 -LRB- denotes (
T18491 626-633 NNP denotes Applied
T18492 634-644 NNPS denotes Biosystems
T18493 644-645 -RRB- denotes )
T18494 645-646 . denotes .
T18495 647-659 JJ denotes Quantitative
T18496 660-663 NNP denotes PCR
T18497 664-666 IN denotes of
T18498 667-673 NN denotes murine
T18499 674-681 NNS denotes samples
T18500 682-685 VBD denotes was
T18501 686-695 VBN denotes performed
T18502 696-700 IN denotes with
T18503 701-710 JJ denotes Brilliant
T18504 711-715 NNP denotes SYBR
T18505 716-721 NNP denotes Green
T18506 722-726 NNP denotes QPCR
T18507 727-733 NN denotes master
T18508 734-737 NN denotes mix
T18509 738-739 -LRB- denotes (
T18510 739-749 NNP denotes Stratagene
T18511 749-750 -RRB- denotes )
T18512 751-754 CC denotes and
T18513 755-758 DT denotes the
T18514 759-768 VBG denotes following
T18515 769-776 NNS denotes primers
T18516 776-777 : denotes :
T18517 778-787 NNP denotes Ubiquitin
T18518 788-789 NNP denotes C
T18519 789-790 , denotes ,
T18520 791-792 CD denotes 5
T18521 792-793 SYM denotes ′
T18522 793-794 : denotes -
T18523 795-798 NNP denotes AGG
T18524 799-802 NNP denotes TCA
T18525 803-806 NNP denotes AAC
T18526 807-810 NNP denotes AGG
T18527 811-814 NNP denotes AAG
T18528 815-818 NNP denotes ACA
T18529 819-822 NNP denotes GAC
T18530 823-828 NNP denotes GTA-3
T18531 828-829 NNP denotes ′
T18532 830-833 CC denotes and
T18533 834-835 CD denotes 5
T18534 835-836 SYM denotes ′
T18535 836-837 : denotes -
T18536 837-860 NN denotes TCACACCCAAGAACAAGCACA-3
T18537 860-861 NN denotes ′
T18538 861-862 : denotes ;
T18539 863-869 NNP denotes Smad-7
T18540 869-870 , denotes ,
T18541 871-872 CD denotes 5
T18542 872-873 SYM denotes ′
T18543 873-874 : denotes -
T18544 874-877 NNP denotes GAA
T18545 878-881 NNP denotes ACC
T18546 882-885 NNP denotes GGG
T18547 886-889 NNP denotes GGA
T18548 890-893 NNP denotes ACG
T18549 894-897 NNP denotes AAT
T18550 898-903 CD denotes TAT-3
T18551 903-904 NN denotes ′
T18552 905-908 CC denotes and
T18553 909-910 CD denotes 5
T18554 910-911 SYM denotes ′
T18555 911-912 : denotes -
T18556 912-915 NNP denotes CGC
T18557 916-919 NNP denotes GAG
T18558 920-923 NNP denotes TCT
T18559 924-927 NNP denotes TCT
T18560 928-931 NNP denotes CCT
T18561 932-935 NNP denotes CCC
T18562 936-939 JJ denotes A-3
T18563 939-940 NN denotes ′
T18564 940-941 : denotes ;
T18565 942-948 NNP denotes TGF-ß1
T18566 948-949 , denotes ,
T18567 950-951 CD denotes 5
T18568 951-952 SYM denotes ′
T18569 952-953 : denotes -
T18570 953-956 NNP denotes TGA
T18571 957-960 NNP denotes CGT
T18572 961-964 NNP denotes CAC
T18573 965-968 NNP denotes TGG
T18574 969-972 NNP denotes AGT
T18575 973-976 NNP denotes TGT
T18576 977-980 NNP denotes ACG
T18577 981-984 NNP denotes G-3
T18578 984-985 NNP denotes ′
T18579 986-989 CC denotes and
T18580 990-991 CD denotes 5
T18581 991-992 SYM denotes ′
T18582 992-993 : denotes -
T18583 993-996 NNP denotes GGT
T18584 997-1000 NNP denotes TCA
T18585 1001-1004 NNP denotes TGT
T18586 1005-1008 NNP denotes CAT
T18587 1009-1012 NNP denotes GGA
T18588 1013-1016 NNP denotes TGG
T18589 1017-1022 CD denotes TGC-3
T18590 1022-1023 NN denotes ′
T18591 1023-1024 . denotes .
T18592 1025-1031 NNP denotes Primer
T18593 1032-1037 NNS denotes pairs
T18594 1038-1042 VBD denotes were
T18595 1043-1052 VBN denotes evaluated
T18596 1053-1056 IN denotes for
T18597 1057-1066 NN denotes integrity
T18598 1067-1069 IN denotes by
T18599 1070-1078 NN denotes analysis
T18600 1079-1081 IN denotes of
T18601 1082-1085 DT denotes the
T18602 1086-1099 NN denotes amplification
T18603 1100-1104 NN denotes plot
T18604 1104-1105 , denotes ,
T18605 1106-1118 NN denotes dissociation
T18606 1119-1125 NNS denotes curves
T18607 1125-1126 , denotes ,
T18608 1127-1130 CC denotes and
T18609 1131-1141 NN denotes efficiency
T18610 1142-1144 IN denotes of
T18611 1145-1148 NNP denotes PCR
T18612 1149-1162 NN denotes amplification
T18613 1162-1163 . denotes .
T18614 1164-1167 NNP denotes PCR
T18615 1168-1178 NNS denotes conditions
T18616 1179-1183 VBD denotes were
T18617 1184-1186 CD denotes 10
T18618 1187-1190 NN denotes min
T18619 1191-1193 IN denotes at
T18620 1194-1196 CD denotes 95
T18621 1197-1198 CD denotes °
T18622 1198-1199 NNP denotes C
T18623 1199-1200 , denotes ,
T18624 1201-1209 VBN denotes followed
T18625 1210-1212 IN denotes by
T18626 1213-1215 CD denotes 40
T18627 1216-1222 NNS denotes cycles
T18628 1223-1225 IN denotes of
T18629 1226-1228 CD denotes 15
T18630 1229-1230 PRP denotes s
T18631 1231-1233 IN denotes at
T18632 1234-1236 CD denotes 95
T18633 1237-1238 CD denotes °
T18634 1238-1239 NNP denotes C
T18635 1240-1243 CC denotes and
T18636 1244-1246 CD denotes 60
T18637 1247-1248 NN denotes °
T18638 1248-1249 NNP denotes C
T18639 1250-1253 IN denotes for
T18640 1254-1255 CD denotes 1
T18641 1256-1259 NN denotes min
T18642 1260-1265 VBG denotes using
T18643 1266-1268 DT denotes an
T18644 1269-1273 CD denotes 7300
T18645 1274-1283 JJ denotes real-time
T18646 1284-1287 NNP denotes PCR
T18647 1288-1294 NN denotes system
T18648 1295-1296 -LRB- denotes (
T18649 1296-1303 NNP denotes Applied
T18650 1304-1314 NNPS denotes Biosystems
T18651 1314-1315 -RRB- denotes )
T18652 1315-1316 . denotes .
T18653 1317-1320 NNP denotes PCR
T18654 1321-1334 NN denotes amplification
T18655 1335-1337 IN denotes of
T18656 1338-1341 DT denotes the
T18657 1342-1354 NN denotes housekeeping
T18658 1355-1359 NN denotes gene
T18659 1360-1368 VBG denotes encoding
T18660 1369-1378 NN denotes ubiquitin
T18661 1379-1380 NNP denotes C
T18662 1381-1384 VBD denotes was
T18663 1385-1394 VBN denotes performed
T18664 1395-1401 IN denotes during
T18665 1402-1406 DT denotes each
T18666 1407-1410 NN denotes run
T18667 1411-1414 IN denotes for
T18668 1415-1419 DT denotes each
T18669 1420-1426 NN denotes sample
T18670 1427-1429 TO denotes to
T18671 1430-1435 VB denotes allow
T18672 1436-1449 NN denotes normalization
T18673 1450-1457 IN denotes between
T18674 1458-1465 NNS denotes samples
T18675 1465-1466 . denotes .
T18676 1467-1475 JJ denotes Relative
T18677 1476-1490 NN denotes quantification
T18678 1491-1494 CC denotes and
T18679 1495-1506 NN denotes calculation
T18680 1507-1509 IN denotes of
T18681 1510-1513 DT denotes the
T18682 1514-1519 NN denotes range
T18683 1520-1522 IN denotes of
T18684 1523-1533 NN denotes confidence
T18685 1534-1537 VBD denotes was
T18686 1538-1547 VBN denotes performed
T18687 1548-1553 VBG denotes using
T18688 1554-1557 DT denotes the
T18689 1558-1569 JJ denotes comparative
T18690 1570-1574 NNP denotes ΔΔCT
T18691 1575-1581 NN denotes method
T18692 1581-1582 . denotes .
R13825 T18362 T18364 amod Quantitative,PCR
R13826 T18363 T18364 amod real-time,PCR
R13827 T18364 T18364 ROOT PCR,PCR
R13828 T18365 T18364 punct .,PCR
R13829 T18366 T18368 det The,primers
R13830 T18367 T18368 compound PCR,primers
R13831 T18368 T18372 nsubjpass primers,designed
R13832 T18369 T18368 cc and,primers
R13833 T18370 T18368 conj probes,primers
R13834 T18371 T18372 auxpass were,designed
R13835 T18372 T18372 ROOT designed,designed
R13836 T18373 T18372 prep based,designed
R13837 T18374 T18373 prep on,based
R13838 T18375 T18376 det the,sequences
R13839 T18376 T18374 pobj sequences,on
R13840 T18377 T18376 acl reported,sequences
R13841 T18378 T18377 prep in,reported
R13842 T18379 T18378 pobj GenBank,in
R13843 T18380 T18377 prep with,reported
R13844 T18381 T18385 det the,version
R13845 T18382 T18383 compound Primer,Express
R13846 T18383 T18385 compound Express,version
R13847 T18384 T18385 compound software,version
R13848 T18385 T18380 pobj version,with
R13849 T18386 T18385 nummod 1.2,version
R13850 T18387 T18389 punct (,Biosystems
R13851 T18388 T18389 compound Applied,Biosystems
R13852 T18389 T18385 appos Biosystems,version
R13853 T18390 T18377 punct ),reported
R13854 T18391 T18392 mark as,follows
R13855 T18392 T18372 advcl follows,designed
R13856 T18393 T18372 punct :,designed
R13857 T18394 T18396 nummod FOXP3,primer
R13858 T18395 T18396 amod forward,primer
R13859 T18396 T18396 ROOT primer,primer
R13860 T18397 T18438 meta 5,primer
R13861 T18398 T18400 punct ′,GAA
R13862 T18399 T18400 punct -,GAA
R13863 T18400 T18438 ccomp GAA,primer
R13864 T18401 T18402 compound ACA,GCA
R13865 T18402 T18426 npadvmod GCA,primer
R13866 T18403 T18426 nmod CAT,primer
R13867 T18404 T18408 nmod TCC,′
R13868 T18405 T18408 nmod CAG,′
R13869 T18406 T18408 nmod AGT,′
R13870 T18407 T18408 amod TC-3,′
R13871 T18408 T18403 appos ′,CAT
R13872 T18409 T18403 punct ;,CAT
R13873 T18410 T18412 nummod FOXP3,primer
R13874 T18411 T18412 compound reverse,primer
R13875 T18412 T18403 appos primer,CAT
R13876 T18413 T18426 nummod 5,primer
R13877 T18414 T18426 punct ′,primer
R13878 T18415 T18426 punct -,primer
R13879 T18416 T18417 compound ATG,GCC
R13880 T18417 T18426 npadvmod GCC,primer
R13881 T18418 T18422 nmod CAG,′
R13882 T18419 T18422 nmod CGG,′
R13883 T18420 T18422 nmod ATG,′
R13884 T18421 T18422 amod AG-3,′
R13885 T18422 T18417 appos ′,GCC
R13886 T18423 T18417 punct ;,GCC
R13887 T18424 T18417 conj EF-1α,GCC
R13888 T18425 T18417 advmod forward,GCC
R13889 T18426 T18400 amod primer,GAA
R13890 T18427 T18426 cc and,primer
R13891 T18428 T18426 conj reverse,primer
R13892 T18429 T18428 dobj primer,reverse
R13893 T18430 T18431 mark as,described
R13894 T18431 T18438 advcl described,primer
R13895 T18432 T18434 nmod [,]
R13896 T18433 T18434 nummod 61,]
R13897 T18434 T18431 dobj ],described
R13898 T18435 T18438 punct ;,primer
R13899 T18436 T18438 nsubj GATA3,primer
R13900 T18437 T18438 advmod forward,primer
R13901 T18438 T18438 ROOT primer,primer
R13902 T18439 T18462 nummod 5,′
R13903 T18440 T18444 punct ′,TCT
R13904 T18441 T18444 punct -,TCT
R13905 T18442 T18444 compound GCG,TCT
R13906 T18443 T18444 compound GGC,TCT
R13907 T18444 T18462 nmod TCT,′
R13908 T18445 T18446 compound ATC,ACA
R13909 T18446 T18447 compound ACA,AAA
R13910 T18447 T18462 dep AAA,′
R13911 T18448 T18449 nummod TGA-3,′
R13912 T18449 T18462 nmod ′,′
R13913 T18450 T18449 cc and,′
R13914 T18451 T18449 conj rwd,′
R13915 T18452 T18451 nummod 5,rwd
R13916 T18453 T18462 punct ′,′
R13917 T18454 T18455 punct -,GCT
R13918 T18455 T18462 compound GCT,′
R13919 T18456 T18462 compound CTC,′
R13920 T18457 T18462 compound CTG,′
R13921 T18458 T18462 nmod GCT,′
R13922 T18459 T18460 compound GCA,GAC
R13923 T18460 T18462 nmod GAC,′
R13924 T18461 T18462 amod AGC-3,′
R13925 T18462 T18438 dep ′,primer
R13926 T18463 T18438 punct .,primer
R13927 T18464 T18466 det The,cDNAs
R13928 T18465 T18466 amod prepared,cDNAs
R13929 T18466 T18468 nsubjpass cDNAs,amplified
R13930 T18467 T18468 auxpass were,amplified
R13931 T18468 T18468 ROOT amplified,amplified
R13932 T18469 T18468 advcl using,amplified
R13933 T18470 T18471 compound SYBR-PCR,mastermix
R13934 T18471 T18469 dobj mastermix,using
R13935 T18472 T18471 punct (,mastermix
R13936 T18473 T18471 appos Biorad,mastermix
R13937 T18474 T18471 punct ),mastermix
R13938 T18475 T18468 prep according,amplified
R13939 T18476 T18475 prep to,according
R13940 T18477 T18478 det the,recommendations
R13941 T18478 T18476 pobj recommendations,to
R13942 T18479 T18478 prep of,recommendations
R13943 T18480 T18481 det the,manufacturer
R13944 T18481 T18479 pobj manufacturer,of
R13945 T18482 T18478 prep in,recommendations
R13946 T18483 T18489 det an,System
R13947 T18484 T18489 compound ABI,System
R13948 T18485 T18489 compound PRISM,System
R13949 T18486 T18489 nummod 7000,System
R13950 T18487 T18489 compound Sequence,System
R13951 T18488 T18489 compound Detection,System
R13952 T18489 T18482 pobj System,in
R13953 T18490 T18489 punct (,System
R13954 T18491 T18492 compound Applied,Biosystems
R13955 T18492 T18489 appos Biosystems,System
R13956 T18493 T18489 punct ),System
R13957 T18494 T18468 punct .,amplified
R13958 T18495 T18496 compound Quantitative,PCR
R13959 T18496 T18501 nsubjpass PCR,performed
R13960 T18497 T18496 prep of,PCR
R13961 T18498 T18499 compound murine,samples
R13962 T18499 T18497 pobj samples,of
R13963 T18500 T18501 auxpass was,performed
R13964 T18501 T18501 ROOT performed,performed
R13965 T18502 T18501 prep with,performed
R13966 T18503 T18508 amod Brilliant,mix
R13967 T18504 T18506 compound SYBR,QPCR
R13968 T18505 T18506 compound Green,QPCR
R13969 T18506 T18508 compound QPCR,mix
R13970 T18507 T18508 compound master,mix
R13971 T18508 T18502 pobj mix,with
R13972 T18509 T18508 punct (,mix
R13973 T18510 T18508 appos Stratagene,mix
R13974 T18511 T18501 punct ),performed
R13975 T18512 T18501 cc and,performed
R13976 T18513 T18515 det the,primers
R13977 T18514 T18515 amod following,primers
R13978 T18515 T18501 conj primers,performed
R13979 T18516 T18515 punct :,primers
R13980 T18517 T18518 compound Ubiquitin,C
R13981 T18518 T18515 appos C,primers
R13982 T18519 T18518 punct ",",C
R13983 T18520 T18531 nummod 5,′
R13984 T18521 T18531 punct ′,′
R13985 T18522 T18531 punct -,′
R13986 T18523 T18531 compound AGG,′
R13987 T18524 T18527 compound TCA,AAG
R13988 T18525 T18527 compound AAC,AAG
R13989 T18526 T18527 compound AGG,AAG
R13990 T18527 T18531 compound AAG,′
R13991 T18528 T18531 compound ACA,′
R13992 T18529 T18531 compound GAC,′
R13993 T18530 T18531 compound GTA-3,′
R13994 T18531 T18518 appos ′,C
R13995 T18532 T18531 cc and,′
R13996 T18533 T18537 nummod 5,′
R13997 T18534 T18536 punct ′,TCACACCCAAGAACAAGCACA-3
R13998 T18535 T18536 punct -,TCACACCCAAGAACAAGCACA-3
R13999 T18536 T18537 compound TCACACCCAAGAACAAGCACA-3,′
R14000 T18537 T18531 conj ′,′
R14001 T18538 T18518 punct ;,C
R14002 T18539 T18518 conj Smad-7,C
R14003 T18540 T18539 punct ",",Smad-7
R14004 T18541 T18551 nummod 5,′
R14005 T18542 T18544 punct ′,GAA
R14006 T18543 T18544 punct -,GAA
R14007 T18544 T18551 compound GAA,′
R14008 T18545 T18549 compound ACC,AAT
R14009 T18546 T18549 compound GGG,AAT
R14010 T18547 T18549 compound GGA,AAT
R14011 T18548 T18549 compound ACG,AAT
R14012 T18549 T18551 compound AAT,′
R14013 T18550 T18551 compound TAT-3,′
R14014 T18551 T18518 appos ′,C
R14015 T18552 T18551 cc and,′
R14016 T18553 T18556 nummod 5,CGC
R14017 T18554 T18556 punct ′,CGC
R14018 T18555 T18556 punct -,CGC
R14019 T18556 T18515 appos CGC,primers
R14020 T18557 T18560 compound GAG,CCT
R14021 T18558 T18560 compound TCT,CCT
R14022 T18559 T18560 compound TCT,CCT
R14023 T18560 T18556 appos CCT,CGC
R14024 T18561 T18561 ROOT CCC,CCC
R14025 T18562 T18563 amod A-3,′
R14026 T18563 T18561 appos ′,CCC
R14027 T18564 T18561 punct ;,CCC
R14028 T18565 T18561 conj TGF-ß1,CCC
R14029 T18566 T18565 punct ",",TGF-ß1
R14030 T18567 T18578 nummod 5,′
R14031 T18568 T18570 punct ′,TGA
R14032 T18569 T18570 punct -,TGA
R14033 T18570 T18573 compound TGA,TGG
R14034 T18571 T18573 compound CGT,TGG
R14035 T18572 T18573 compound CAC,TGG
R14036 T18573 T18578 compound TGG,′
R14037 T18574 T18578 compound AGT,′
R14038 T18575 T18578 compound TGT,′
R14039 T18576 T18578 compound ACG,′
R14040 T18577 T18578 compound G-3,′
R14041 T18578 T18561 conj ′,CCC
R14042 T18579 T18578 cc and,′
R14043 T18580 T18590 nummod 5,′
R14044 T18581 T18588 punct ′,TGG
R14045 T18582 T18588 punct -,TGG
R14046 T18583 T18588 compound GGT,TGG
R14047 T18584 T18588 compound TCA,TGG
R14048 T18585 T18588 compound TGT,TGG
R14049 T18586 T18588 compound CAT,TGG
R14050 T18587 T18588 compound GGA,TGG
R14051 T18588 T18590 nmod TGG,′
R14052 T18589 T18590 nummod TGC-3,′
R14053 T18590 T18578 conj ′,′
R14054 T18591 T18590 punct .,′
R14055 T18592 T18593 compound Primer,pairs
R14056 T18593 T18595 nsubjpass pairs,evaluated
R14057 T18594 T18595 auxpass were,evaluated
R14058 T18595 T18595 ROOT evaluated,evaluated
R14059 T18596 T18595 prep for,evaluated
R14060 T18597 T18596 pobj integrity,for
R14061 T18598 T18595 agent by,evaluated
R14062 T18599 T18606 nmod analysis,curves
R14063 T18600 T18599 prep of,analysis
R14064 T18601 T18603 det the,plot
R14065 T18602 T18603 compound amplification,plot
R14066 T18603 T18600 pobj plot,of
R14067 T18604 T18603 punct ",",plot
R14068 T18605 T18606 compound dissociation,curves
R14069 T18606 T18598 pobj curves,by
R14070 T18607 T18606 punct ",",curves
R14071 T18608 T18606 cc and,curves
R14072 T18609 T18606 conj efficiency,curves
R14073 T18610 T18609 prep of,efficiency
R14074 T18611 T18612 compound PCR,amplification
R14075 T18612 T18610 pobj amplification,of
R14076 T18613 T18595 punct .,evaluated
R14077 T18614 T18615 compound PCR,conditions
R14078 T18615 T18616 nsubj conditions,were
R14079 T18616 T18616 ROOT were,were
R14080 T18617 T18618 nummod 10,min
R14081 T18618 T18616 attr min,were
R14082 T18619 T18616 prep at,were
R14083 T18620 T18621 nummod 95,°
R14084 T18621 T18622 nummod °,C
R14085 T18622 T18619 pobj C,at
R14086 T18623 T18622 punct ",",C
R14087 T18624 T18616 advcl followed,were
R14088 T18625 T18624 agent by,followed
R14089 T18626 T18627 nummod 40,cycles
R14090 T18627 T18625 pobj cycles,by
R14091 T18628 T18627 prep of,cycles
R14092 T18629 T18628 pobj 15,of
R14093 T18630 T18627 appos s,cycles
R14094 T18631 T18624 prep at,followed
R14095 T18632 T18634 nummod 95,C
R14096 T18633 T18634 nummod °,C
R14097 T18634 T18631 pobj C,at
R14098 T18635 T18624 cc and,followed
R14099 T18636 T18637 nummod 60,°
R14100 T18637 T18638 compound °,C
R14101 T18638 T18624 conj C,followed
R14102 T18639 T18638 prep for,C
R14103 T18640 T18641 nummod 1,min
R14104 T18641 T18639 pobj min,for
R14105 T18642 T18616 advcl using,were
R14106 T18643 T18647 det an,system
R14107 T18644 T18647 nummod 7300,system
R14108 T18645 T18647 amod real-time,system
R14109 T18646 T18647 compound PCR,system
R14110 T18647 T18642 dobj system,using
R14111 T18648 T18647 punct (,system
R14112 T18649 T18650 compound Applied,Biosystems
R14113 T18650 T18647 appos Biosystems,system
R14114 T18651 T18647 punct ),system
R14115 T18652 T18616 punct .,were
R14116 T18653 T18654 compound PCR,amplification
R14117 T18654 T18663 nsubjpass amplification,performed
R14118 T18655 T18654 prep of,amplification
R14119 T18656 T18658 det the,gene
R14120 T18657 T18658 compound housekeeping,gene
R14121 T18658 T18655 pobj gene,of
R14122 T18659 T18661 compound encoding,C
R14123 T18660 T18661 compound ubiquitin,C
R14124 T18661 T18663 nsubjpass C,performed
R14125 T18662 T18663 auxpass was,performed
R14126 T18663 T18663 ROOT performed,performed
R14127 T18664 T18663 prep during,performed
R14128 T18665 T18666 det each,run
R14129 T18666 T18664 pobj run,during
R14130 T18667 T18666 prep for,run
R14131 T18668 T18669 det each,sample
R14132 T18669 T18667 pobj sample,for
R14133 T18670 T18671 aux to,allow
R14134 T18671 T18663 advcl allow,performed
R14135 T18672 T18671 dobj normalization,allow
R14136 T18673 T18672 prep between,normalization
R14137 T18674 T18673 pobj samples,between
R14138 T18675 T18663 punct .,performed
R14139 T18676 T18677 compound Relative,quantification
R14140 T18677 T18686 nsubjpass quantification,performed
R14141 T18678 T18677 cc and,quantification
R14142 T18679 T18677 conj calculation,quantification
R14143 T18680 T18679 prep of,calculation
R14144 T18681 T18682 det the,range
R14145 T18682 T18680 pobj range,of
R14146 T18683 T18682 prep of,range
R14147 T18684 T18683 pobj confidence,of
R14148 T18685 T18686 auxpass was,performed
R14149 T18686 T18686 ROOT performed,performed
R14150 T18687 T18686 advcl using,performed
R14151 T18688 T18691 det the,method
R14152 T18689 T18691 amod comparative,method
R14153 T18690 T18691 compound ΔΔCT,method
R14154 T18691 T18687 dobj method,using
R14155 T18692 T18686 punct .,performed

GO-BP

Id Subject Object Predicate Lexical cue
T18337 222-225 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18338 441-444 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18339 226-229 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT
T18340 1005-1008 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT
T18341 894-897 http://purl.obolibrary.org/obo/GO_0004069 denotes AAT
T18342 957-960 http://purl.obolibrary.org/obo/GO_0047801 denotes CGT

GO-MF

Id Subject Object Predicate Lexical cue
T18701 222-225 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18702 441-444 http://purl.obolibrary.org/obo/GO_0033968 denotes GCA
T18703 226-229 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT
T18704 1005-1008 http://purl.obolibrary.org/obo/GO_0004096 denotes CAT
T18705 778-787 http://purl.obolibrary.org/obo/GO_0031386 denotes Ubiquitin
T18706 1369-1378 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin
T18707 894-897 http://purl.obolibrary.org/obo/GO_0004069 denotes AAT
T18708 957-960 http://purl.obolibrary.org/obo/GO_0047801 denotes CGT

GO-CC

Id Subject Object Predicate Lexical cue
T18709 230-233 http://purl.obolibrary.org/obo/GO_0005579 denotes TCC
T18710 932-935 http://purl.obolibrary.org/obo/GO_0030896 denotes CCC

sentences

Id Subject Object Predicate Lexical cue
T18328 0-27 Sentence denotes Quantitative real-time PCR.
T18329 28-456 Sentence denotes The PCR primers and probes were designed based on the sequences reported in GenBank with the Primer Express software version 1.2 (Applied Biosystems) as follows: FOXP3 forward primer 5′-GAA ACA GCA CAT TCC CAG AGT TC-3′; FOXP3 reverse primer 5′-ATG GCC CAG CGG ATG AG-3′; EF-1α forward primer and reverse primer as described [61]; GATA3 forward primer 5′-GCG GGC TCT ATC ACA AAA TGA-3′ and rwd 5′-GCT CTC CTG GCT GCA GAC AGC-3′.
T18330 457-646 Sentence denotes The prepared cDNAs were amplified using SYBR-PCR mastermix (Biorad) according to the recommendations of the manufacturer in an ABI PRISM 7000 Sequence Detection System (Applied Biosystems).
T18331 647-777 Sentence denotes Quantitative PCR of murine samples was performed with Brilliant SYBR Green QPCR master mix (Stratagene) and the following primers:
T18332 778-1024 Sentence denotes Ubiquitin C, 5′- AGG TCA AAC AGG AAG ACA GAC GTA-3′ and 5′-TCACACCCAAGAACAAGCACA-3′; Smad-7, 5′-GAA ACC GGG GGA ACG AAT TAT-3′ and 5′-CGC GAG TCT TCT CCT CCC A-3′; TGF-ß1, 5′-TGA CGT CAC TGG AGT TGT ACG G-3′ and 5′-GGT TCA TGT CAT GGA TGG TGC-3′.
T18333 1025-1163 Sentence denotes Primer pairs were evaluated for integrity by analysis of the amplification plot, dissociation curves, and efficiency of PCR amplification.
T18334 1164-1316 Sentence denotes PCR conditions were 10 min at 95 °C, followed by 40 cycles of 15 s at 95 °C and 60 °C for 1 min using an 7300 real-time PCR system (Applied Biosystems).
T18335 1317-1466 Sentence denotes PCR amplification of the housekeeping gene encoding ubiquitin C was performed during each run for each sample to allow normalization between samples.
T18336 1467-1582 Sentence denotes Relative quantification and calculation of the range of confidence was performed using the comparative ΔΔCT method.
T268 0-27 Sentence denotes Quantitative real-time PCR.
T269 28-456 Sentence denotes The PCR primers and probes were designed based on the sequences reported in GenBank with the Primer Express software version 1.2 (Applied Biosystems) as follows: FOXP3 forward primer 5′-GAA ACA GCA CAT TCC CAG AGT TC-3′; FOXP3 reverse primer 5′-ATG GCC CAG CGG ATG AG-3′; EF-1α forward primer and reverse primer as described [61]; GATA3 forward primer 5′-GCG GGC TCT ATC ACA AAA TGA-3′ and rwd 5′-GCT CTC CTG GCT GCA GAC AGC-3′.
T270 457-646 Sentence denotes The prepared cDNAs were amplified using SYBR-PCR mastermix (Biorad) according to the recommendations of the manufacturer in an ABI PRISM 7000 Sequence Detection System (Applied Biosystems).
T271 647-777 Sentence denotes Quantitative PCR of murine samples was performed with Brilliant SYBR Green QPCR master mix (Stratagene) and the following primers:
T272 778-1024 Sentence denotes Ubiquitin C, 5′- AGG TCA AAC AGG AAG ACA GAC GTA-3′ and 5′-TCACACCCAAGAACAAGCACA-3′; Smad-7, 5′-GAA ACC GGG GGA ACG AAT TAT-3′ and 5′-CGC GAG TCT TCT CCT CCC A-3′; TGF-ß1, 5′-TGA CGT CAC TGG AGT TGT ACG G-3′ and 5′-GGT TCA TGT CAT GGA TGG TGC-3′.
T273 1025-1163 Sentence denotes Primer pairs were evaluated for integrity by analysis of the amplification plot, dissociation curves, and efficiency of PCR amplification.
T274 1164-1316 Sentence denotes PCR conditions were 10 min at 95 °C, followed by 40 cycles of 15 s at 95 °C and 60 °C for 1 min using an 7300 real-time PCR system (Applied Biosystems).
T275 1317-1466 Sentence denotes PCR amplification of the housekeeping gene encoding ubiquitin C was performed during each run for each sample to allow normalization between samples.
T276 1467-1582 Sentence denotes Relative quantification and calculation of the range of confidence was performed using the comparative ΔΔCT method.

events-check-again

Id Subject Object Predicate Lexical cue
T18746 190-195 Protein denotes FOXP3
T18747 249-254 Protein denotes FOXP3
T18748 300-305 Protein denotes EF-1α
T18749 359-364 Protein denotes GATA3
T18750 778-789 Protein denotes Ubiquitin C
T18751 863-869 Protein denotes Smad-7
T18752 942-948 Protein denotes TGF-ß1
T18753 1369-1380 Protein denotes ubiquitin C

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18711 104-111 Protein denotes GenBank
T18712 190-195 Protein denotes FOXP3
T18713 218-233 Protein denotes ACA GCA CAT TCC
T18714 234-241 Protein denotes CAG AGT
T18715 249-254 Protein denotes FOXP3
T18716 300-305 Protein denotes EF-1α
T18717 359-364 Protein denotes GATA3
T18718 584-593 Protein denotes ABI PRISM
T18719 778-789 Protein denotes Ubiquitin C
T18720 942-948 Protein denotes TGF-ß1
T18721 1369-1380 Protein denotes ubiquitin C

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T18320 190-195 Protein denotes FOXP3
T18321 249-254 Protein denotes FOXP3
T18322 300-305 Protein denotes EF-1α
T18323 359-364 Protein denotes GATA3
T18324 778-789 Protein denotes Ubiquitin C
T18325 863-869 Protein denotes Smad-7
T18326 942-948 Protein denotes TGF-ß1
T18327 1369-1380 Protein denotes ubiquitin C

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18343 190-195 Q9BZS1 denotes FOXP3
T18344 249-254 Q9BZS1 denotes FOXP3
T18345 359-364 P23771 denotes GATA3
T18346 898-901 P04608 denotes TAT
T18347 898-901 P04610 denotes TAT
T18348 898-901 Q8UMQ1 denotes TAT
T18349 898-901 P04605 denotes TAT
T18350 916-919 P04591 denotes GAG
T18351 1017-1020 P21980 denotes TGC
T18352 1467-1475 Q04864 denotes Relative

test2

Id Subject Object Predicate Lexical cue
T18312 190-195 Protein denotes FOXP3
T18313 249-254 Protein denotes FOXP3
T18314 300-305 Protein denotes EF-1α
T18315 359-364 Protein denotes GATA3
T18316 778-789 Protein denotes Ubiquitin C
T18317 863-869 Protein denotes Smad-7
T18318 942-948 Protein denotes TGF-ß1
T18319 1369-1380 Protein denotes ubiquitin C