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PMC:2222968 / 35782-36197 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
18162042-12554698-84705059 178-180 12554698 denotes 60
T44281 178-180 12554698 denotes 60

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18081 0-9 NN denotes Isolation
T18082 10-12 IN denotes of
T18083 13-17 JJ denotes CD4+
T18084 18-19 NN denotes T
T18085 20-25 NN denotes cells
T18086 27-31 JJ denotes CD4+
T18087 32-33 NN denotes T
T18088 34-39 NN denotes cells
T18089 40-44 VB denotes were
T18090 45-53 VB denotes isolated
T18091 54-58 IN denotes from
T18092 59-64 NN denotes blood
T18093 65-67 IN denotes of
T18094 68-75 JJ denotes healthy
T18095 76-81 JJ denotes human
T18096 82-92 NN denotes volunteers
T18097 93-98 VB denotes using
T18098 99-102 DT denotes the
T18099 103-111 JJ denotes anti-CD4
T18100 112-120 JJ denotes magnetic
T18101 121-126 NN denotes beads
T18102 127-128 -LRB- denotes (
T18103 128-133 NNP denotes Dynal
T18104 133-134 -COMMA- denotes ,
T18105 135-142 NNP denotes Hamburg
T18106 142-143 -COMMA- denotes ,
T18107 144-151 NNP denotes Germany
T18108 151-152 -RRB- denotes )
T18109 153-155 IN denotes as
T18110 156-166 RB denotes previously
T18111 167-176 VB denotes described
T18112 177-178 -LRB- denotes [
T18113 178-180 CD denotes 60
T18114 180-181 -RRB- denotes ]
T18115 183-186 DT denotes The
T18116 187-193 NN denotes purity
T18117 194-196 IN denotes of
T18118 197-201 JJ denotes CD4+
T18119 202-203 NN denotes T
T18120 204-209 NN denotes cells
T18121 210-213 VB denotes was
T18122 214-223 RB denotes initially
T18123 224-230 VB denotes tested
T18124 231-233 IN denotes by
T18125 234-238 NN denotes FACS
T18126 239-242 CC denotes and
T18127 243-246 VB denotes was
T18128 247-248 RB denotes ≥
T18129 249-251 CD denotes 95
T18130 251-252 NN denotes %
T18131 254-267 NN denotes Monoclonality
T18132 268-270 IN denotes of
T18133 271-272 NN denotes T
T18134 273-277 NN denotes cell
T18135 278-284 NN denotes clones
T18136 285-288 VB denotes was
T18137 289-298 VB denotes confirmed
T18138 299-301 IN denotes by
T18139 302-311 JJ denotes TCR-chain
T18140 312-319 NN denotes mapping
T18141 320-323 CC denotes and
T18142 324-327 VB denotes was
T18143 328-338 VB denotes identified
T18144 339-341 TO denotes to
T18145 342-344 VB denotes be
T18146 345-351 NN denotes Vbeta8
T18147 352-360 JJ denotes positive
T18148 362-365 DT denotes The
T18149 366-372 NN denotes clones
T18150 373-377 VB denotes were
T18151 378-391 VB denotes characterized
T18152 392-394 IN denotes by
T18153 395-399 JJ denotes high
T18154 400-404 NN denotes IL-4
T18155 405-414 NN denotes secretion
R13649 T18081 T18082 arg1Of Isolation,of
R13650 T18085 T18082 arg2Of cells,of
R13651 T18085 T18083 arg1Of cells,CD4+
R13652 T18085 T18084 arg1Of cells,T
R13653 T18088 T18086 arg1Of cells,CD4+
R13654 T18088 T18087 arg1Of cells,T
R13655 T18088 T18089 arg1Of cells,were
R13656 T18088 T18090 arg2Of cells,isolated
R13657 T18090 T18089 arg2Of isolated,were
R13658 T18090 T18091 arg1Of isolated,from
R13659 T18092 T18091 arg2Of blood,from
R13660 T18092 T18093 arg1Of blood,of
R13661 T18096 T18093 arg2Of volunteers,of
R13662 T18096 T18094 arg1Of volunteers,healthy
R13663 T18096 T18095 arg1Of volunteers,human
R13664 T18096 T18097 arg1Of volunteers,using
R13665 T18096 T18109 arg1Of volunteers,as
R13666 T18097 T18102 arg1Of using,(
R13667 T18101 T18097 arg2Of beads,using
R13668 T18101 T18098 arg1Of beads,the
R13669 T18101 T18099 arg1Of beads,anti-CD4
R13670 T18101 T18100 arg1Of beads,magnetic
R13671 T18103 T18104 arg1Of Dynal,","
R13672 T18104 T18102 arg2Of ",",(
R13673 T18104 T18106 arg1Of ",",","
R13674 T18105 T18104 arg2Of Hamburg,","
R13675 T18107 T18106 arg2Of Germany,","
R13676 T18108 T18102 arg3Of ),(
R13677 T18111 T18110 arg1Of described,previously
R13678 T18113 T18109 arg2Of 60,as
R13679 T18113 T18111 arg1Of 60,described
R13680 T18113 T18112 arg2Of 60,[
R13681 T18114 T18112 arg3Of ],[
R13682 T18116 T18115 arg1Of purity,The
R13683 T18116 T18117 arg1Of purity,of
R13684 T18116 T18121 arg1Of purity,was
R13685 T18116 T18123 arg2Of purity,tested
R13686 T18116 T18127 arg1Of purity,was
R13687 T18120 T18117 arg2Of cells,of
R13688 T18120 T18118 arg1Of cells,CD4+
R13689 T18120 T18119 arg1Of cells,T
R13690 T18123 T18121 arg2Of tested,was
R13691 T18123 T18122 arg1Of tested,initially
R13692 T18123 T18126 arg1Of tested,and
R13693 T18125 T18123 arg1Of FACS,tested
R13694 T18125 T18124 arg2Of FACS,by
R13695 T18127 T18126 arg2Of was,and
R13696 T18129 T18128 arg1Of 95,≥
R13697 T18130 T18127 arg2Of %,was
R13698 T18130 T18129 arg1Of %,95
R13699 T18131 T18132 arg1Of Monoclonality,of
R13700 T18131 T18136 arg1Of Monoclonality,was
R13701 T18131 T18137 arg2Of Monoclonality,confirmed
R13702 T18131 T18142 arg1Of Monoclonality,was
R13703 T18131 T18143 arg2Of Monoclonality,identified
R13704 T18131 T18145 arg1Of Monoclonality,be
R13705 T18131 T18147 arg1Of Monoclonality,positive
R13706 T18135 T18132 arg2Of clones,of
R13707 T18135 T18133 arg1Of clones,T
R13708 T18135 T18134 arg1Of clones,cell
R13709 T18137 T18136 arg2Of confirmed,was
R13710 T18137 T18141 arg1Of confirmed,and
R13711 T18140 T18137 arg1Of mapping,confirmed
R13712 T18140 T18138 arg2Of mapping,by
R13713 T18140 T18139 arg1Of mapping,TCR-chain
R13714 T18143 T18141 arg2Of identified,and
R13715 T18143 T18142 arg2Of identified,was
R13716 T18145 T18143 arg3Of be,identified
R13717 T18145 T18144 arg1Of be,to
R13718 T18147 T18145 arg2Of positive,be
R13719 T18147 T18146 arg1Of positive,Vbeta8
R13720 T18149 T18148 arg1Of clones,The
R13721 T18149 T18150 arg1Of clones,were
R13722 T18149 T18151 arg2Of clones,characterized
R13723 T18151 T18150 arg2Of characterized,were
R13724 T18155 T18151 arg1Of secretion,characterized
R13725 T18155 T18152 arg2Of secretion,by
R13726 T18155 T18153 arg1Of secretion,high
R13727 T18155 T18154 arg1Of secretion,IL-4

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18166 0-9 NN denotes Isolation
T18167 10-12 IN denotes of
T18168 13-16 CD denotes CD4
T18169 16-17 CD denotes +
T18170 18-19 NNP denotes T
T18171 20-25 NNS denotes cells
T18172 25-26 . denotes .
T18173 27-30 CD denotes CD4
T18174 30-31 CD denotes +
T18175 32-33 NNP denotes T
T18176 34-39 NNS denotes cells
T18177 40-44 VBD denotes were
T18178 45-53 VBN denotes isolated
T18179 54-58 IN denotes from
T18180 59-64 NN denotes blood
T18181 65-67 IN denotes of
T18182 68-75 JJ denotes healthy
T18183 76-81 JJ denotes human
T18184 82-92 NNS denotes volunteers
T18185 93-98 VBG denotes using
T18186 99-102 DT denotes the
T18187 103-111 JJ denotes anti-CD4
T18188 112-120 JJ denotes magnetic
T18189 121-126 NNS denotes beads
T18190 127-128 -LRB- denotes (
T18191 128-133 NNP denotes Dynal
T18192 133-134 , denotes ,
T18193 135-142 NNP denotes Hamburg
T18194 142-143 , denotes ,
T18195 144-151 NNP denotes Germany
T18196 151-152 -RRB- denotes )
T18197 153-155 IN denotes as
T18198 156-166 RB denotes previously
T18199 167-176 VBN denotes described
T18200 177-178 NNP denotes [
T18201 178-180 CD denotes 60
T18202 180-181 NNP denotes ]
T18203 181-182 . denotes .
T18204 183-186 DT denotes The
T18205 187-193 NN denotes purity
T18206 194-196 IN denotes of
T18207 197-200 CD denotes CD4
T18208 200-201 CD denotes +
T18209 202-203 NNP denotes T
T18210 204-209 NNS denotes cells
T18211 210-213 VBD denotes was
T18212 214-223 RB denotes initially
T18213 224-230 VBN denotes tested
T18214 231-233 IN denotes by
T18215 234-238 NNP denotes FACS
T18216 239-242 CC denotes and
T18217 243-246 VBD denotes was
T18218 247-248 VBN denotes ≥
T18219 249-251 CD denotes 95
T18220 251-252 NN denotes %
T18221 252-253 . denotes .
T18222 254-267 NN denotes Monoclonality
T18223 268-270 IN denotes of
T18224 271-272 NNP denotes T
T18225 273-277 NN denotes cell
T18226 278-284 NNS denotes clones
T18227 285-288 VBD denotes was
T18228 289-298 VBN denotes confirmed
T18229 299-301 IN denotes by
T18230 302-311 JJ denotes TCR-chain
T18231 312-319 NN denotes mapping
T18232 320-323 CC denotes and
T18233 324-327 VBD denotes was
T18234 328-338 VBN denotes identified
T18235 339-341 TO denotes to
T18236 342-344 VB denotes be
T18237 345-351 JJ denotes Vbeta8
T18238 352-360 JJ denotes positive
T18239 360-361 . denotes .
T18240 362-365 DT denotes The
T18241 366-372 NNS denotes clones
T18242 373-377 VBD denotes were
T18243 378-391 VBN denotes characterized
T18244 392-394 IN denotes by
T18245 395-399 JJ denotes high
T18246 400-404 NN denotes IL-4
T18247 405-414 NN denotes secretion
T18248 414-415 . denotes .
R13728 T18166 T18166 ROOT Isolation,Isolation
R13729 T18167 T18166 prep of,Isolation
R13730 T18168 T18171 nummod CD4,cells
R13731 T18169 T18171 nummod +,cells
R13732 T18170 T18171 compound T,cells
R13733 T18171 T18167 pobj cells,of
R13734 T18172 T18166 punct .,Isolation
R13735 T18173 T18178 nsubjpass CD4,isolated
R13736 T18174 T18176 nummod +,cells
R13737 T18175 T18176 compound T,cells
R13738 T18176 T18177 nsubj cells,were
R13739 T18177 T18178 auxpass were,isolated
R13740 T18178 T18178 ROOT isolated,isolated
R13741 T18179 T18178 prep from,isolated
R13742 T18180 T18179 pobj blood,from
R13743 T18181 T18180 prep of,blood
R13744 T18182 T18184 amod healthy,volunteers
R13745 T18183 T18184 amod human,volunteers
R13746 T18184 T18181 pobj volunteers,of
R13747 T18185 T18184 acl using,volunteers
R13748 T18186 T18189 det the,beads
R13749 T18187 T18189 amod anti-CD4,beads
R13750 T18188 T18189 amod magnetic,beads
R13751 T18189 T18185 dobj beads,using
R13752 T18190 T18189 punct (,beads
R13753 T18191 T18189 appos Dynal,beads
R13754 T18192 T18191 punct ",",Dynal
R13755 T18193 T18191 conj Hamburg,Dynal
R13756 T18194 T18193 punct ",",Hamburg
R13757 T18195 T18193 appos Germany,Hamburg
R13758 T18196 T18193 punct ),Hamburg
R13759 T18197 T18199 mark as,described
R13760 T18198 T18199 advmod previously,described
R13761 T18199 T18178 advcl described,isolated
R13762 T18200 T18202 nmod [,]
R13763 T18201 T18202 nummod 60,]
R13764 T18202 T18199 dobj ],described
R13765 T18203 T18178 punct .,isolated
R13766 T18204 T18205 det The,purity
R13767 T18205 T18213 nsubjpass purity,tested
R13768 T18206 T18205 prep of,purity
R13769 T18207 T18210 nummod CD4,cells
R13770 T18208 T18210 nummod +,cells
R13771 T18209 T18210 compound T,cells
R13772 T18210 T18206 pobj cells,of
R13773 T18211 T18213 auxpass was,tested
R13774 T18212 T18213 advmod initially,tested
R13775 T18213 T18213 ROOT tested,tested
R13776 T18214 T18213 agent by,tested
R13777 T18215 T18214 pobj FACS,by
R13778 T18216 T18213 cc and,tested
R13779 T18217 T18218 auxpass was,≥
R13780 T18218 T18213 conj ≥,tested
R13781 T18219 T18220 nummod 95,%
R13782 T18220 T18218 npadvmod %,≥
R13783 T18221 T18213 punct .,tested
R13784 T18222 T18228 nsubjpass Monoclonality,confirmed
R13785 T18223 T18222 prep of,Monoclonality
R13786 T18224 T18226 compound T,clones
R13787 T18225 T18226 compound cell,clones
R13788 T18226 T18223 pobj clones,of
R13789 T18227 T18228 auxpass was,confirmed
R13790 T18228 T18228 ROOT confirmed,confirmed
R13791 T18229 T18228 agent by,confirmed
R13792 T18230 T18231 amod TCR-chain,mapping
R13793 T18231 T18229 pobj mapping,by
R13794 T18232 T18228 cc and,confirmed
R13795 T18233 T18234 auxpass was,identified
R13796 T18234 T18228 conj identified,confirmed
R13797 T18235 T18236 aux to,be
R13798 T18236 T18234 xcomp be,identified
R13799 T18237 T18238 amod Vbeta8,positive
R13800 T18238 T18236 acomp positive,be
R13801 T18239 T18228 punct .,confirmed
R13802 T18240 T18241 det The,clones
R13803 T18241 T18243 nsubjpass clones,characterized
R13804 T18242 T18243 auxpass were,characterized
R13805 T18243 T18243 ROOT characterized,characterized
R13806 T18244 T18243 agent by,characterized
R13807 T18245 T18247 amod high,secretion
R13808 T18246 T18247 compound IL-4,secretion
R13809 T18247 T18244 pobj secretion,by
R13810 T18248 T18243 punct .,characterized

UBERON-AE

Id Subject Object Predicate Lexical cue
T18065 59-64 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T18078 302-305 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T18079 400-414 http://purl.obolibrary.org/obo/GO_0072602 denotes IL-4 secretion
T18080 405-414 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

GO-MF

Id Subject Object Predicate Lexical cue
T18256 400-404 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

GO-CC

Id Subject Object Predicate Lexical cue
T18257 20-25 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18258 34-39 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18259 204-209 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18260 273-277 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T18261 302-305 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR

sentences

Id Subject Object Predicate Lexical cue
T18073 0-26 Sentence denotes Isolation of CD4+ T cells.
T18074 27-182 Sentence denotes CD4+ T cells were isolated from blood of healthy human volunteers using the anti-CD4 magnetic beads (Dynal, Hamburg, Germany) as previously described [60].
T18075 183-253 Sentence denotes The purity of CD4+ T cells was initially tested by FACS and was ≥ 95%.
T18076 254-361 Sentence denotes Monoclonality of T cell clones was confirmed by TCR-chain mapping and was identified to be Vbeta8 positive.
T18077 362-415 Sentence denotes The clones were characterized by high IL-4 secretion.
T263 0-26 Sentence denotes Isolation of CD4+ T cells.
T264 27-182 Sentence denotes CD4+ T cells were isolated from blood of healthy human volunteers using the anti-CD4 magnetic beads (Dynal, Hamburg, Germany) as previously described [60].
T265 183-253 Sentence denotes The purity of CD4+ T cells was initially tested by FACS and was ≥ 95%.
T266 254-361 Sentence denotes Monoclonality of T cell clones was confirmed by TCR-chain mapping and was identified to be Vbeta8 positive.
T267 362-415 Sentence denotes The clones were characterized by high IL-4 secretion.

events-check-again

Id Subject Object Predicate Lexical cue
T18290 13-16 Protein denotes CD4
T18291 27-30 Protein denotes CD4
T18292 108-111 Protein denotes CD4
T18293 197-200 Protein denotes CD4
T18294 395-399 Positive_regulation denotes high
T18295 400-404 Protein denotes IL-4
T18296 405-414 Gene_expression denotes secretion
R13821 T18295 T18296 themeOf IL-4,secretion
R13822 T18296 T18294 themeOf secretion,high

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18262 13-17 Protein denotes CD4+
T18263 27-31 Protein denotes CD4+
T18264 197-201 Protein denotes CD4+
T18265 345-351 Protein denotes Vbeta8
T18266 352-360 Gene_expression denotes positive
T18267 400-404 Protein denotes IL-4
T18268 405-414 Localization denotes secretion
R13813 T18265 T18266 themeOf Vbeta8,positive
R13814 T18267 T18268 themeOf IL-4,secretion

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T18066 13-16 Protein denotes CD4
T18067 27-30 Protein denotes CD4
T18068 108-111 Protein denotes CD4
T18069 197-200 Protein denotes CD4
T18070 395-399 Positive_regulation denotes high
T18071 400-404 Protein denotes IL-4
T18072 405-414 Gene_expression denotes secretion
R13647 T18071 T18072 themeOf IL-4,secretion
R13648 T18072 T18070 themeOf secretion,high

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18156 13-16 P01730 denotes CD4
T18157 27-30 P01730 denotes CD4
T18158 108-111 P01730 denotes CD4
T18159 197-200 P01730 denotes CD4
T18160 400-404 P05112 denotes IL-4

test2

Id Subject Object Predicate Lexical cue
T18058 13-16 Protein denotes CD4
T18059 27-30 Protein denotes CD4
T18060 108-111 Protein denotes CD4
T18061 197-200 Protein denotes CD4
T18062 395-399 Positive_regulation denotes high
T18063 400-404 Protein denotes IL-4
T18064 405-414 Localization denotes secretion
R13645 T18063 T18064 themeOf IL-4,secretion
R13646 T18064 T18062 themeOf secretion,high