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PMC:1942070 / 7029-7192 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3871 0-2 TO denotes To
T3872 3-14 VB denotes investigate
T3873 15-18 DT denotes the
T3874 19-25 NN denotes effect
T3875 26-30 IN denotes that
T3876 31-35 NN denotes loss
T3877 36-38 IN denotes of
T3878 39-42 NN denotes PKD
T3879 43-50 NN denotes kinases
T3880 51-54 VB denotes had
T3881 55-57 IN denotes on
T3882 58-59 NN denotes B
T3883 60-64 NN denotes cell
T3884 65-73 NN denotes survival
T3885 74-80 CC denotes and/or
T3886 81-94 NN denotes proliferation
T3887 95-97 PRP denotes we
T3888 98-106 VB denotes cultured
T3889 107-116 JJ denotes wild-type
T3890 117-120 CC denotes and
T3891 121-129 JJ denotes PKD-null
T3892 130-135 NN denotes cells
T3893 136-138 IN denotes in
T3894 139-142 DT denotes the
T3895 143-151 NN denotes presence
T3896 152-153 -LRB- denotes (
T3897 153-162 NN denotes PKD1/3−/−
T3898 162-163 -COLON- denotes :
R3091 T3872 T3871 arg1Of investigate,To
R3092 T3874 T3872 arg2Of effect,investigate
R3093 T3874 T3873 arg1Of effect,the
R3094 T3876 T3877 arg1Of loss,of
R3095 T3876 T3880 arg1Of loss,had
R3096 T3879 T3877 arg2Of kinases,of
R3097 T3879 T3878 arg1Of kinases,PKD
R3098 T3880 T3874 arg2Of had,effect
R3099 T3880 T3875 arg1Of had,that
R3100 T3880 T3881 arg1Of had,on
R3101 T3884 T3885 arg1Of survival,and/or
R3102 T3885 T3881 arg2Of and/or,on
R3103 T3885 T3882 arg1Of and/or,B
R3104 T3885 T3883 arg1Of and/or,cell
R3105 T3886 T3885 arg2Of proliferation,and/or
R3106 T3887 T3872 arg1Of we,investigate
R3107 T3887 T3888 arg1Of we,cultured
R3108 T3888 T3871 modOf cultured,To
R3109 T3888 T3893 arg1Of cultured,in
R3110 T3889 T3890 arg1Of wild-type,and
R3111 T3891 T3890 arg2Of PKD-null,and
R3112 T3892 T3888 arg2Of cells,cultured
R3113 T3892 T3889 arg1Of cells,wild-type
R3114 T3892 T3891 arg1Of cells,PKD-null
R3115 T3895 T3893 arg2Of presence,in
R3116 T3895 T3894 arg1Of presence,the
R3117 T3895 T3896 arg1Of presence,(
R3118 T3897 T3896 arg2Of PKD1/3−/−,(
R3119 T3898 T3896 arg3Of :,(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4276 136-138 IN denotes in
T4277 139-142 DT denotes the
T4278 143-151 NN denotes presence
T4279 152-153 -LRB- denotes (
T4280 153-159 CD denotes PKD1/3
T4281 159-160 CD denotes −
T4282 160-161 NN denotes /
T4283 161-162 NN denotes −
T4284 162-163 : denotes :
T4254 0-2 TO denotes To
T4255 3-14 VB denotes investigate
T4256 15-18 DT denotes the
T4257 19-25 NN denotes effect
T4258 26-30 WDT denotes that
T4259 31-35 NN denotes loss
T4260 36-38 IN denotes of
T4261 39-42 NNP denotes PKD
T4262 43-50 NNS denotes kinases
T4263 51-54 VBD denotes had
T4264 55-57 IN denotes on
T4265 58-59 NNP denotes B
T4266 60-64 NN denotes cell
T4267 65-73 NN denotes survival
T4268 74-80 CC denotes and/or
T4269 81-94 NN denotes proliferation
T4270 95-97 PRP denotes we
T4271 98-106 VBD denotes cultured
T4272 107-116 JJ denotes wild-type
T4273 117-120 CC denotes and
T4274 121-129 JJ denotes PKD-null
T4275 130-135 NNS denotes cells
R3453 T4254 T4255 aux To,investigate
R3454 T4255 T4271 advcl investigate,cultured
R3455 T4256 T4257 det the,effect
R3456 T4257 T4255 dobj effect,investigate
R3457 T4258 T4263 dobj that,had
R3458 T4259 T4263 nsubj loss,had
R3459 T4260 T4259 prep of,loss
R3460 T4261 T4262 compound PKD,kinases
R3461 T4262 T4260 pobj kinases,of
R3462 T4263 T4257 relcl had,effect
R3463 T4264 T4263 prep on,had
R3464 T4265 T4267 compound B,survival
R3465 T4266 T4267 compound cell,survival
R3466 T4267 T4264 pobj survival,on
R3467 T4268 T4263 cc and/or,had
R3468 T4269 T4271 dobj proliferation,cultured
R3469 T4270 T4271 nsubj we,cultured
R3470 T4271 T4271 ROOT cultured,cultured
R3471 T4272 T4275 amod wild-type,cells
R3472 T4273 T4272 cc and,wild-type
R3473 T4274 T4272 conj PKD-null,wild-type
R3474 T4275 T4271 dobj cells,cultured
R3475 T4276 T4271 prep in,cultured
R3476 T4277 T4278 det the,presence
R3477 T4278 T4276 pobj presence,in
R3478 T4279 T4278 punct (,presence
R3480 T4281 T4283 nummod −,−
R3481 T4282 T4283 compound /,−
R3483 T4284 T4283 punct :,−

GO-CC

Id Subject Object Predicate Lexical cue
T4614 130-135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T3810 0-163 Sentence denotes To investigate the effect that loss of PKD kinases had on B cell survival and/or proliferation we cultured wild-type and PKD-null cells in the presence (PKD1/3−/−:
T52 0-163 Sentence denotes To investigate the effect that loss of PKD kinases had on B cell survival and/or proliferation we cultured wild-type and PKD-null cells in the presence (PKD1/3−/−:

events-check-again

Id Subject Object Predicate Lexical cue
T4751 153-157 Protein denotes PKD1
T4752 158-159 Protein denotes 3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4780 39-50 Protein denotes PKD kinases
T4781 121-124 Protein denotes PKD
T4782 153-157 Protein denotes PKD1
T4786 31-35 Negative_regulation denotes loss
R3851 T4780 T4786 themeOf PKD kinases,loss

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3783 153-157 Protein denotes PKD1
T3784 158-159 Protein denotes 3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4193 153-157 P98161 denotes PKD1

test2

Id Subject Object Predicate Lexical cue
T3755 153-157 Protein denotes PKD1
T3756 158-159 Protein denotes 3