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PMC:1942070 / 147-1037 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T49 33-40 NN denotes protein
T50 41-47 NN denotes kinase
T51 48-49 NN denotes D
T52 50-51 -LRB- denotes (
T53 51-54 NN denotes PKD
T54 54-55 -RRB- denotes )
T55 56-63 NN denotes enzymes
T56 64-66 PRP denotes we
T57 67-76 VB denotes generated
T58 77-78 DT denotes a
T59 79-87 JJ denotes PKD-null
T60 88-92 NN denotes DT40
T61 93-105 NN denotes B-lymphocyte
T62 106-110 NN denotes cell
T63 111-115 NN denotes line
T64 117-127 RB denotes Previously
T65 128-130 PRP denotes we
T66 131-135 VB denotes have
T67 136-141 VB denotes shown
T68 142-146 IN denotes that
T69 147-151 NN denotes PKDs
T70 152-156 VB denotes have
T71 157-159 DT denotes an
T72 160-169 JJ denotes essential
T73 170-174 NN denotes role
T74 175-177 IN denotes in
T75 178-188 VB denotes regulating
T76 189-194 NN denotes class
T77 195-197 CD denotes II
T78 198-205 NN denotes histone
T79 206-218 NN denotes deacetylases
T80 219-221 IN denotes in
T81 222-226 NN denotes DT40
T82 227-234 NN denotes B-cells
T83 235-236 -LRB- denotes [
T84 236-244 NNP denotes Matthews
T85 244-245 -COMMA- denotes ,
T86 246-250 NNP denotes S.A.
T87 250-251 -COMMA- denotes ,
T88 252-255 NNP denotes Liu
T89 255-256 -COMMA- denotes ,
T90 257-259 NNP denotes P.
T91 259-260 -COMMA- denotes ,
T92 261-269 NNP denotes Spitaler
T93 269-270 -COMMA- denotes ,
T94 271-273 NNP denotes M.
T95 273-274 -COMMA- denotes ,
T96 275-280 NNP denotes Olson
T97 280-281 -COMMA- denotes ,
T98 282-286 NNP denotes E.N.
T99 286-287 -COMMA- denotes ,
T100 288-296 NNP denotes McKinsey
T101 296-297 -COMMA- denotes ,
T102 298-302 NNP denotes T.A.
T103 302-303 -COMMA- denotes ,
T104 304-312 NNP denotes Cantrell
T105 312-313 -COMMA- denotes ,
T106 314-318 NNP denotes D.A.
T107 319-322 CC denotes and
T108 323-334 NNP denotes Scharenberg
T109 334-335 -COMMA- denotes ,
T110 336-340 NNP denotes A.M.
T111 341-342 -LRB- denotes (
T112 342-346 CD denotes 2006
T113 346-347 -RRB- denotes )
T114 348-357 JJ denotes Essential
T115 358-362 NN denotes role
T116 363-366 IN denotes for
T117 367-374 NN denotes protein
T118 375-381 NN denotes kinase
T119 382-383 NN denotes D
T120 384-390 NN denotes family
T121 391-398 NN denotes kinases
T122 399-401 IN denotes in
T123 402-405 DT denotes the
T124 406-416 NN denotes regulation
T125 417-419 IN denotes of
T126 420-425 NN denotes class
T127 426-428 CD denotes II
T128 429-436 NN denotes histone
T129 437-449 NN denotes deacetylases
T130 450-452 IN denotes in
T131 453-454 NN denotes B
T132 455-466 NN denotes lymphocytes
T133 468-472 NNP denotes Mol.
T134 473-477 NNP denotes Cell
T135 478-483 NNP denotes Biol.
T136 484-486 CD denotes 26
T137 486-487 -COMMA- denotes ,
T138 488-497 CD denotes 1569–1577
T139 497-498 -RRB- denotes ]
T140 500-502 PRP denotes We
T141 503-506 RB denotes now
T142 507-511 VB denotes show
T143 512-516 IN denotes that
T144 517-521 NN denotes PKDs
T145 522-525 VB denotes are
T146 526-530 RB denotes also
T147 531-539 VB denotes required
T148 540-542 TO denotes to
T149 543-551 VB denotes regulate
T150 552-557 NN denotes HSP27
T151 558-573 NN denotes phosphorylation
T152 574-576 IN denotes in
T153 577-581 NN denotes DT40
T154 582-589 NN denotes B-cells
T155 591-598 RB denotes However
T156 598-599 -COMMA- denotes ,
T157 600-602 IN denotes in
T158 603-611 NN denotes contrast
T159 612-614 TO denotes to
T160 615-623 JJ denotes previous
T161 624-636 NN denotes observations
T162 637-639 IN denotes in
T163 640-645 JJ denotes other
T164 646-650 NN denotes cell
T165 651-656 NN denotes types
T166 656-657 -COMMA- denotes ,
T167 658-661 NN denotes PKD
T168 662-669 NN denotes enzymes
T169 670-672 VB denotes do
T170 673-676 RB denotes not
T171 677-685 VB denotes regulate
T172 686-691 JJ denotes basic
T173 692-700 JJ denotes cellular
T174 701-710 NN denotes processes
T175 711-715 JJ denotes such
T176 716-718 IN denotes as
T177 719-732 NN denotes proliferation
T178 733-735 CC denotes or
T179 736-744 NN denotes survival
T180 745-754 NN denotes responses
T181 754-755 -COMMA- denotes ,
T182 756-759 CC denotes nor
T183 760-764 NN denotes NFκB
T184 765-780 JJ denotes transcriptional
T185 781-789 NN denotes activity
T186 790-800 RB denotes downstream
T187 801-803 IN denotes of
T188 804-807 DT denotes the
T189 808-809 NN denotes B
T190 810-814 NN denotes cell
T191 815-822 NN denotes antigen
T192 823-831 NN denotes receptor
T193 833-837 RB denotes Thus
T194 837-838 -COMMA- denotes ,
T195 839-843 NN denotes PKDs
T196 844-848 VB denotes have
T197 849-850 DT denotes a
T198 851-860 JJ denotes selective
T199 861-865 NN denotes role
T200 866-868 IN denotes in
T201 869-873 NN denotes DT40
T202 874-880 NN denotes B-cell
T203 881-888 NN denotes biology
T44 0-2 TO denotes To
T45 3-14 VB denotes investigate
T46 15-18 DT denotes the
T47 19-29 NN denotes importance
T48 30-32 IN denotes of
R9 T51 T52 arg1Of D,(
R10 T53 T52 arg2Of PKD,(
R11 T54 T52 arg3Of ),(
R15 T56 T57 arg1Of we,generated
R17 T63 T57 arg2Of line,generated
R18 T63 T58 arg1Of line,a
R19 T63 T59 arg1Of line,PKD-null
R20 T63 T60 arg1Of line,DT40
R21 T63 T61 arg1Of line,B-lymphocyte
R22 T63 T62 arg1Of line,cell
R23 T65 T66 arg1Of we,have
R24 T65 T67 arg1Of we,shown
R25 T67 T64 arg1Of shown,Previously
R26 T67 T66 arg2Of shown,have
R27 T69 T70 arg1Of PKDs,have
R28 T70 T67 arg2Of have,shown
R29 T70 T68 arg1Of have,that
R30 T70 T74 arg1Of have,in
R31 T73 T70 arg2Of role,have
R32 T73 T71 arg1Of role,an
R33 T73 T72 arg1Of role,essential
R34 T75 T74 arg2Of regulating,in
R35 T75 T80 arg1Of regulating,in
R36 T79 T75 arg2Of deacetylases,regulating
R37 T79 T76 arg1Of deacetylases,class
R38 T79 T77 arg1Of deacetylases,II
R39 T79 T78 arg1Of deacetylases,histone
R40 T82 T80 arg2Of B-cells,in
R41 T82 T81 arg1Of B-cells,DT40
R42 T84 T85 arg1Of Matthews,","
R43 T85 T87 arg1Of ",",","
R44 T86 T85 arg2Of S.A.,","
R45 T87 T89 arg1Of ",",","
R46 T88 T87 arg2Of Liu,","
R47 T89 T91 arg1Of ",",","
R48 T90 T89 arg2Of P.,","
R49 T91 T93 arg1Of ",",","
R50 T92 T91 arg2Of Spitaler,","
R51 T93 T95 arg1Of ",",","
R52 T94 T93 arg2Of M.,","
R53 T95 T105 arg1Of ",",","
R54 T96 T97 arg1Of Olson,","
R55 T97 T99 arg1Of ",",","
R56 T98 T97 arg2Of E.N.,","
R57 T99 T101 arg1Of ",",","
R58 T100 T99 arg2Of McKinsey,","
R59 T101 T103 arg1Of ",",","
R60 T102 T101 arg2Of T.A.,","
R61 T103 T95 arg2Of ",",","
R62 T104 T103 arg2Of Cantrell,","
R63 T105 T107 arg1Of ",",and
R64 T106 T105 arg2Of D.A.,","
R65 T108 T109 arg1Of Scharenberg,","
R66 T109 T107 arg2Of ",",and
R67 T110 T109 arg2Of A.M.,","
R68 T112 T111 arg2Of 2006,(
R69 T113 T111 arg3Of ),(
R70 T115 T80 arg3Of role,in
R71 T115 T83 arg1Of role,[
R72 T115 T84 arg1Of role,Matthews
R73 T115 T86 arg1Of role,S.A.
R74 T115 T88 arg1Of role,Liu
R75 T115 T90 arg1Of role,P.
R76 T115 T92 arg1Of role,Spitaler
R77 T115 T94 arg1Of role,M.
R78 T115 T96 arg1Of role,Olson
R79 T115 T98 arg1Of role,E.N.
R80 T115 T100 arg1Of role,McKinsey
R81 T115 T102 arg1Of role,T.A.
R82 T115 T104 arg1Of role,Cantrell
R83 T115 T106 arg1Of role,D.A.
R84 T115 T108 arg1Of role,Scharenberg
R85 T115 T110 arg1Of role,A.M.
R86 T115 T111 arg1Of role,(
R87 T115 T114 arg1Of role,Essential
R88 T115 T116 arg1Of role,for
R89 T115 T122 arg1Of role,in
R90 T121 T116 arg2Of kinases,for
R91 T121 T117 arg1Of kinases,protein
R92 T121 T118 arg1Of kinases,kinase
R93 T121 T119 arg1Of kinases,D
R94 T121 T120 arg1Of kinases,family
R95 T124 T122 arg2Of regulation,in
R96 T124 T123 arg1Of regulation,the
R97 T124 T125 arg1Of regulation,of
R98 T129 T125 arg2Of deacetylases,of
R99 T129 T126 arg1Of deacetylases,class
R100 T129 T127 arg1Of deacetylases,II
R101 T129 T128 arg1Of deacetylases,histone
R102 T129 T130 arg1Of deacetylases,in
R103 T132 T130 arg2Of lymphocytes,in
R104 T132 T131 arg1Of lymphocytes,B
R105 T135 T133 arg1Of Biol.,Mol.
R106 T135 T134 arg1Of Biol.,Cell
R107 T135 T136 arg1Of Biol.,26
R108 T135 T137 arg1Of Biol.,","
R109 T138 T137 arg2Of 1569–1577,","
R110 T138 T139 arg1Of 1569–1577,]
R111 T140 T142 arg1Of We,show
R112 T142 T141 arg1Of show,now
R113 T144 T145 arg1Of PKDs,are
R114 T144 T147 arg2Of PKDs,required
R115 T144 T149 arg1Of PKDs,regulate
R116 T147 T142 arg2Of required,show
R117 T147 T143 arg1Of required,that
R118 T147 T145 arg2Of required,are
R119 T147 T146 arg1Of required,also
R120 T149 T147 arg3Of regulate,required
R121 T149 T148 arg1Of regulate,to
R122 T149 T152 arg1Of regulate,in
R123 T151 T149 arg2Of phosphorylation,regulate
R124 T151 T150 arg1Of phosphorylation,HSP27
R125 T154 T152 arg2Of B-cells,in
R126 T154 T153 arg1Of B-cells,DT40
R127 T158 T157 arg2Of contrast,in
R128 T158 T159 arg1Of contrast,to
R129 T161 T159 arg2Of observations,to
R130 T161 T160 arg1Of observations,previous
R131 T161 T162 arg1Of observations,in
R132 T165 T162 arg2Of types,in
R133 T165 T163 arg1Of types,other
R134 T165 T164 arg1Of types,cell
R135 T168 T167 arg1Of enzymes,PKD
R136 T168 T169 arg1Of enzymes,do
R137 T168 T171 arg1Of enzymes,regulate
R138 T171 T155 arg1Of regulate,However
R139 T171 T156 arg1Of regulate,","
R140 T171 T157 arg1Of regulate,in
R141 T171 T166 arg1Of regulate,","
R142 T171 T169 arg2Of regulate,do
R143 T171 T170 arg1Of regulate,not
R144 T174 T171 arg2Of processes,regulate
R145 T174 T172 arg1Of processes,basic
R146 T174 T173 arg1Of processes,cellular
R147 T174 T176 arg1Of processes,as
R148 T176 T175 arg1Of as,such
R149 T177 T178 arg1Of proliferation,or
R150 T178 T182 arg1Of or,nor
R151 T180 T178 arg2Of responses,or
R152 T180 T179 arg1Of responses,survival
R153 T182 T176 arg2Of nor,as
R154 T182 T181 arg1Of nor,","
R155 T185 T182 arg2Of activity,nor
R156 T185 T183 arg1Of activity,NFκB
R157 T185 T184 arg1Of activity,transcriptional
R158 T185 T186 arg1Of activity,downstream
R159 T186 T187 arg1Of downstream,of
R160 T192 T187 arg2Of receptor,of
R161 T192 T188 arg1Of receptor,the
R162 T192 T189 arg1Of receptor,B
R163 T192 T190 arg1Of receptor,cell
R164 T192 T191 arg1Of receptor,antigen
R165 T195 T196 arg1Of PKDs,have
R166 T196 T193 arg1Of have,Thus
R167 T196 T194 arg1Of have,","
R168 T196 T200 arg1Of have,in
R169 T199 T196 arg2Of role,have
R170 T199 T197 arg1Of role,a
R171 T199 T198 arg1Of role,selective
R172 T203 T200 arg2Of biology,in
R173 T203 T201 arg1Of biology,DT40
R174 T203 T202 arg1Of biology,B-cell
R7 T51 T49 arg1Of D,protein
R8 T51 T50 arg1Of D,kinase
R12 T55 T48 arg2Of enzymes,of
R13 T55 T51 arg1Of enzymes,D
R14 T56 T45 arg1Of we,investigate
R16 T57 T44 modOf generated,To
R392 T45 T44 arg1Of investigate,To
R393 T47 T45 arg2Of importance,investigate
R394 T47 T46 arg1Of importance,the
R395 T47 T48 arg1Of importance,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T230 0-2 TO denotes To
T231 3-14 VB denotes investigate
T232 15-18 DT denotes the
T233 19-29 NN denotes importance
T234 30-32 IN denotes of
T235 33-40 NN denotes protein
T236 41-47 NN denotes kinase
T237 48-49 NNP denotes D
T238 50-51 -LRB- denotes (
T239 51-54 NNP denotes PKD
T240 54-55 -RRB- denotes )
T241 56-63 VBZ denotes enzymes
T242 64-66 PRP denotes we
T243 67-76 VBD denotes generated
T244 77-78 DT denotes a
T245 79-87 NNP denotes PKD-null
T246 88-92 NNP denotes DT40
T247 93-105 NNP denotes B-lymphocyte
T248 106-110 NN denotes cell
T249 111-115 NN denotes line
T250 115-116 . denotes .
T251 117-127 RB denotes Previously
T252 128-130 PRP denotes we
T253 131-135 VBP denotes have
T254 136-141 VBN denotes shown
T255 142-146 IN denotes that
T256 147-151 NNS denotes PKDs
T257 152-156 VBP denotes have
T258 157-159 DT denotes an
T259 160-169 JJ denotes essential
T260 170-174 NN denotes role
T261 175-177 IN denotes in
T262 178-188 VBG denotes regulating
T263 189-194 NN denotes class
T264 195-197 NNP denotes II
T265 198-205 NN denotes histone
T266 206-218 NNS denotes deacetylases
T267 219-221 IN denotes in
T268 222-226 NNP denotes DT40
T269 227-234 NNPS denotes B-cells
T270 235-236 NNP denotes [
T271 236-244 NNP denotes Matthews
T272 244-245 , denotes ,
T273 246-250 NNP denotes S.A.
T274 250-251 , denotes ,
T275 252-255 NNP denotes Liu
T276 255-256 , denotes ,
T277 257-259 NNP denotes P.
T278 259-260 , denotes ,
T279 261-269 NNP denotes Spitaler
T280 269-270 , denotes ,
T281 271-273 NNP denotes M.
T282 273-274 , denotes ,
T283 275-280 NNP denotes Olson
T284 280-281 , denotes ,
T285 282-286 NNP denotes E.N.
T286 286-287 , denotes ,
T287 288-296 NNP denotes McKinsey
T288 296-297 , denotes ,
T289 298-302 NNP denotes T.A.
T290 302-303 , denotes ,
T291 304-312 NNP denotes Cantrell
T292 312-313 , denotes ,
T293 314-318 NNP denotes D.A.
T294 319-322 CC denotes and
T295 323-334 NNP denotes Scharenberg
T296 334-335 , denotes ,
T297 336-340 NNP denotes A.M.
T298 341-342 -LRB- denotes (
T299 342-346 CD denotes 2006
T300 346-347 -RRB- denotes )
T301 348-357 JJ denotes Essential
T302 358-362 NN denotes role
T303 363-366 IN denotes for
T304 367-374 NN denotes protein
T305 375-381 NN denotes kinase
T306 382-383 NNP denotes D
T307 384-390 NN denotes family
T308 391-398 NNS denotes kinases
T309 399-401 IN denotes in
T310 402-405 DT denotes the
T311 406-416 NN denotes regulation
T312 417-419 IN denotes of
T313 420-425 NN denotes class
T314 426-428 NNP denotes II
T315 429-436 NN denotes histone
T316 437-449 NNS denotes deacetylases
T317 450-452 IN denotes in
T318 453-454 NNP denotes B
T319 455-466 NNS denotes lymphocytes
T320 466-467 . denotes .
T321 468-471 NNP denotes Mol
T322 471-472 . denotes .
T323 473-477 NNP denotes Cell
T324 478-482 NNP denotes Biol
T325 482-483 . denotes .
T326 484-486 CD denotes 26
T327 486-487 , denotes ,
T328 488-492 CD denotes 1569
T329 493-497 CD denotes 1577
T330 497-498 NNP denotes ]
T331 498-499 . denotes .
T332 500-502 PRP denotes We
T333 503-506 RB denotes now
T334 507-511 VBP denotes show
T335 512-516 IN denotes that
T336 517-521 NNS denotes PKDs
T337 522-525 VBP denotes are
T338 526-530 RB denotes also
T339 531-539 VBN denotes required
T340 540-542 TO denotes to
T341 543-551 VB denotes regulate
T342 552-557 NNP denotes HSP27
T343 558-573 NN denotes phosphorylation
T344 574-576 IN denotes in
T345 577-581 NNP denotes DT40
T346 582-589 NNPS denotes B-cells
T347 589-590 . denotes .
T348 591-598 RB denotes However
T349 598-599 , denotes ,
T350 600-602 IN denotes in
T351 603-611 NN denotes contrast
T352 612-614 TO denotes to
T353 615-623 JJ denotes previous
T354 624-636 NNS denotes observations
T355 637-639 IN denotes in
T356 640-645 JJ denotes other
T357 646-650 NN denotes cell
T358 651-656 NNS denotes types
T359 656-657 , denotes ,
T360 658-661 NNP denotes PKD
T361 662-669 VBZ denotes enzymes
T362 670-672 VB denotes do
T363 673-676 RB denotes not
T364 677-685 VB denotes regulate
T365 686-691 JJ denotes basic
T366 692-700 JJ denotes cellular
T367 701-710 NNS denotes processes
T368 711-715 JJ denotes such
T369 716-718 IN denotes as
T370 719-732 NN denotes proliferation
T371 733-735 CC denotes or
T372 736-744 NN denotes survival
T373 745-754 NNS denotes responses
T374 754-755 , denotes ,
T375 756-759 CC denotes nor
T376 760-764 NNP denotes NFκB
T377 765-780 JJ denotes transcriptional
T378 781-789 NN denotes activity
T379 790-800 JJ denotes downstream
T380 801-803 IN denotes of
T381 804-807 DT denotes the
T382 808-809 NNP denotes B
T383 810-814 NN denotes cell
T384 815-822 NN denotes antigen
T385 823-831 NN denotes receptor
T386 831-832 . denotes .
T387 833-837 RB denotes Thus
T388 837-838 , denotes ,
T389 839-843 NNS denotes PKDs
T390 844-848 VBP denotes have
T391 849-850 DT denotes a
T392 851-860 JJ denotes selective
T393 861-865 NN denotes role
T394 866-868 IN denotes in
T395 869-873 NNP denotes DT40
T396 874-880 NNP denotes B-cell
T397 881-888 NN denotes biology
T398 888-889 . denotes .
R204 T241 T231 dobj enzymes,investigate
R205 T242 T243 nsubj we,generated
R206 T243 T241 relcl generated,enzymes
R207 T244 T249 det a,line
R208 T245 T249 compound PKD-null,line
R209 T246 T247 compound DT40,B-lymphocyte
R210 T247 T249 compound B-lymphocyte,line
R211 T248 T249 compound cell,line
R212 T249 T243 dobj line,generated
R214 T251 T254 advmod Previously,shown
R215 T252 T254 nsubj we,shown
R216 T253 T254 aux have,shown
R217 T254 T254 ROOT shown,shown
R218 T255 T257 mark that,have
R219 T256 T257 nsubj PKDs,have
R220 T257 T254 ccomp have,shown
R221 T258 T260 det an,role
R222 T259 T260 amod essential,role
R223 T260 T257 dobj role,have
R224 T261 T260 prep in,role
R225 T262 T261 pcomp regulating,in
R226 T263 T266 compound class,deacetylases
R227 T264 T266 compound II,deacetylases
R228 T265 T266 compound histone,deacetylases
R229 T266 T262 dobj deacetylases,regulating
R230 T267 T262 prep in,regulating
R231 T268 T271 compound DT40,Matthews
R232 T269 T271 compound B-cells,Matthews
R233 T270 T271 compound [,Matthews
R234 T271 T267 pobj Matthews,in
R235 T272 T271 punct ",",Matthews
R236 T273 T271 conj S.A.,Matthews
R237 T274 T271 punct ",",Matthews
R238 T275 T271 conj Liu,Matthews
R239 T276 T275 punct ",",Liu
R240 T277 T275 conj P.,Liu
R241 T278 T277 punct ",",P.
R242 T279 T277 conj Spitaler,P.
R243 T280 T279 punct ",",Spitaler
R244 T281 T279 conj M.,Spitaler
R245 T282 T281 punct ",",M.
R246 T283 T281 conj Olson,M.
R247 T284 T283 punct ",",Olson
R248 T285 T283 conj E.N.,Olson
R249 T286 T285 punct ",",E.N.
R250 T287 T285 conj McKinsey,E.N.
R251 T288 T287 punct ",",McKinsey
R252 T289 T287 conj T.A.,McKinsey
R253 T290 T287 punct ",",McKinsey
R254 T291 T287 conj Cantrell,McKinsey
R255 T292 T291 punct ",",Cantrell
R256 T293 T291 conj D.A.,Cantrell
R257 T294 T293 cc and,D.A.
R258 T295 T293 conj Scharenberg,D.A.
R259 T296 T295 punct ",",Scharenberg
R260 T297 T295 conj A.M.,Scharenberg
R261 T298 T297 punct (,A.M.
R262 T299 T297 appos 2006,A.M.
R263 T300 T297 punct ),A.M.
R264 T301 T302 amod Essential,role
R265 T302 T260 appos role,role
R266 T303 T302 prep for,role
R267 T304 T303 pobj protein,for
R268 T305 T308 compound kinase,kinases
R269 T306 T307 compound D,family
R270 T307 T308 compound family,kinases
R271 T308 T302 conj kinases,role
R272 T309 T308 prep in,kinases
R273 T310 T311 det the,regulation
R274 T311 T309 pobj regulation,in
R275 T312 T311 prep of,regulation
R276 T313 T316 compound class,deacetylases
R277 T314 T316 compound II,deacetylases
R278 T315 T316 compound histone,deacetylases
R279 T316 T312 pobj deacetylases,of
R280 T317 T316 prep in,deacetylases
R281 T318 T319 compound B,lymphocytes
R282 T319 T317 pobj lymphocytes,in
R283 T320 T254 punct .,shown
R284 T321 T321 ROOT Mol,Mol
R285 T322 T321 punct .,Mol
R286 T323 T324 compound Cell,Biol
R287 T324 T324 ROOT Biol,Biol
R288 T325 T326 punct .,26
R289 T326 T324 nummod 26,Biol
R290 T327 T324 punct ",",Biol
R291 T328 T324 appos 1569,Biol
R292 T329 T324 appos 1577,Biol
R293 T330 T330 ROOT ],]
R294 T331 T324 punct .,Biol
R295 T332 T334 nsubj We,show
R296 T333 T334 advmod now,show
R297 T334 T334 ROOT show,show
R298 T335 T339 mark that,required
R299 T336 T339 nsubjpass PKDs,required
R300 T337 T339 auxpass are,required
R301 T338 T339 advmod also,required
R302 T339 T334 ccomp required,show
R303 T340 T341 aux to,regulate
R304 T341 T339 xcomp regulate,required
R305 T342 T343 compound HSP27,phosphorylation
R306 T343 T341 dobj phosphorylation,regulate
R307 T344 T343 prep in,phosphorylation
R308 T345 T346 compound DT40,B-cells
R309 T346 T344 pobj B-cells,in
R310 T347 T334 punct .,show
R311 T348 T364 advmod However,regulate
R312 T349 T364 punct ",",regulate
R313 T350 T364 prep in,regulate
R314 T351 T350 pobj contrast,in
R315 T352 T351 prep to,contrast
R316 T353 T354 amod previous,observations
R317 T354 T352 pobj observations,to
R318 T355 T354 prep in,observations
R319 T356 T358 amod other,types
R320 T357 T358 compound cell,types
R321 T358 T355 pobj types,in
R322 T359 T364 punct ",",regulate
R323 T360 T364 nsubj PKD,regulate
R324 T361 T364 nsubj enzymes,regulate
R325 T362 T364 aux do,regulate
R326 T363 T364 neg not,regulate
R327 T364 T364 ROOT regulate,regulate
R328 T365 T367 amod basic,processes
R329 T366 T367 amod cellular,processes
R330 T367 T364 dobj processes,regulate
R331 T368 T369 amod such,as
R332 T369 T367 prep as,processes
R333 T370 T369 pobj proliferation,as
R334 T371 T370 cc or,proliferation
R335 T372 T370 conj survival,proliferation
R336 T373 T370 conj responses,proliferation
R337 T374 T373 punct ",",responses
R338 T375 T364 cc nor,regulate
R339 T376 T378 nmod NFκB,activity
R340 T377 T378 amod transcriptional,activity
R341 T378 T364 conj activity,regulate
R342 T379 T378 amod downstream,activity
R343 T380 T379 prep of,downstream
R344 T381 T385 det the,receptor
R345 T382 T384 compound B,antigen
R346 T383 T384 compound cell,antigen
R347 T384 T385 compound antigen,receptor
R348 T385 T380 pobj receptor,of
R349 T386 T364 punct .,regulate
R350 T387 T390 advmod Thus,have
R351 T388 T390 punct ",",have
R352 T389 T390 nsubj PKDs,have
R353 T390 T390 ROOT have,have
R354 T391 T393 det a,role
R355 T392 T393 amod selective,role
R356 T393 T390 dobj role,have
R357 T394 T393 prep in,role
R358 T395 T396 compound DT40,B-cell
R359 T396 T397 compound B-cell,biology
R360 T397 T394 pobj biology,in
R361 T398 T390 punct .,have
R193 T230 T231 aux To,investigate
R195 T232 T233 det the,importance
R196 T233 T231 dobj importance,investigate
R197 T234 T233 prep of,importance
R198 T235 T234 pobj protein,of
R199 T236 T237 compound kinase,D
R200 T237 T235 appos D,protein
R201 T238 T237 punct (,D
R202 T239 T237 appos PKD,D
R203 T240 T237 punct ),D

GO-BP

Id Subject Object Predicate Lexical cue
T21 406-416 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T22 558-573 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T23 692-700 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T24 692-710 http://purl.obolibrary.org/obo/GO_0009987 denotes cellular processes
T25 765-780 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

GO-CC

Id Subject Object Predicate Lexical cue
T400 229-234 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T401 584-589 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T402 646-650 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T403 810-814 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T404 876-880 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T405 692-710 http://purl.obolibrary.org/obo/GO_0042995 denotes cellular processes

sentences

Id Subject Object Predicate Lexical cue
T17 468-499 Sentence denotes Mol. Cell Biol. 26, 1569–1577].
T15 0-116 Sentence denotes To investigate the importance of protein kinase D (PKD) enzymes we generated a PKD-null DT40 B-lymphocyte cell line.
T16 117-467 Sentence denotes Previously we have shown that PKDs have an essential role in regulating class II histone deacetylases in DT40 B-cells [Matthews, S.A., Liu, P., Spitaler, M., Olson, E.N., McKinsey, T.A., Cantrell, D.A. and Scharenberg, A.M. (2006) Essential role for protein kinase D family kinases in the regulation of class II histone deacetylases in B lymphocytes.
T18 500-590 Sentence denotes We now show that PKDs are also required to regulate HSP27 phosphorylation in DT40 B-cells.
T19 591-832 Sentence denotes However, in contrast to previous observations in other cell types, PKD enzymes do not regulate basic cellular processes such as proliferation or survival responses, nor NFκB transcriptional activity downstream of the B cell antigen receptor.
T20 833-889 Sentence denotes Thus, PKDs have a selective role in DT40 B-cell biology.
T3 0-116 Sentence denotes To investigate the importance of protein kinase D (PKD) enzymes we generated a PKD-null DT40 B-lymphocyte cell line.
T4 117-467 Sentence denotes Previously we have shown that PKDs have an essential role in regulating class II histone deacetylases in DT40 B-cells [Matthews, S.A., Liu, P., Spitaler, M., Olson, E.N., McKinsey, T.A., Cantrell, D.A. and Scharenberg, A.M. (2006) Essential role for protein kinase D family kinases in the regulation of class II histone deacetylases in B lymphocytes.
T5 468-472 Sentence denotes Mol.
T6 473-483 Sentence denotes Cell Biol.
T7 484-499 Sentence denotes 26, 1569–1577].
T8 500-590 Sentence denotes We now show that PKDs are also required to regulate HSP27 phosphorylation in DT40 B-cells.
T9 591-832 Sentence denotes However, in contrast to previous observations in other cell types, PKD enzymes do not regulate basic cellular processes such as proliferation or survival responses, nor NFκB transcriptional activity downstream of the B cell antigen receptor.
T10 833-889 Sentence denotes Thus, PKDs have a selective role in DT40 B-cell biology.

events-check-again

Id Subject Object Predicate Lexical cue
T425 531-539 Positive_regulation denotes required
T426 543-551 Regulation denotes regulate
T427 552-557 Protein denotes HSP27
T428 558-573 Phosphorylation denotes phosphorylation
R410 T426 T425 themeOf regulate,required
R411 T427 T428 themeOf HSP27,phosphorylation
R412 T428 T426 themeOf phosphorylation,regulate

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T432 33-49 Protein denotes protein kinase D
T433 51-54 Protein denotes PKD
T434 79-82 Protein denotes PKD
T435 147-151 Protein denotes PKDs
T436 189-218 Protein denotes class II histone deacetylases
T437 367-398 Protein denotes protein kinase D family kinases
T438 420-449 Protein denotes class II histone deacetylases
T439 406-416 Regulation denotes regulation
T440 517-521 Protein denotes PKDs
T441 552-557 Protein denotes HSP27
T442 558-573 Phosphorylation denotes phosphorylation
T443 543-551 Regulation denotes regulate
T444 531-539 Positive_regulation denotes required
T445 658-669 Protein denotes PKD enzymes
T446 760-764 Protein denotes NFκB
T447 808-831 Protein denotes B cell antigen receptor
T448 677-685 Regulation denotes regulate
T449 839-843 Protein denotes PKDs
R363 T438 T439 themeOf class II histone deacetylases,regulation
R364 T440 T443 causeOf PKDs,regulate
R365 T440 T444 causeOf PKDs,required
R366 T441 T442 themeOf HSP27,phosphorylation
R367 T442 T443 themeOf phosphorylation,regulate
R368 T443 T444 themeOf regulate,required
R369 T445 T448 causeOf PKD enzymes,regulate
R370 T447 T448 themeOf B cell antigen receptor,regulate

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T10 531-539 Positive_regulation denotes required
T11 543-551 Regulation denotes regulate
T12 552-557 Protein denotes HSP27
T13 558-573 Phosphorylation denotes phosphorylation
R371 T11 T10 themeOf regulate,required
R372 T12 T13 themeOf HSP27,phosphorylation
R373 T13 T11 themeOf phosphorylation,regulate

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T204 552-557 P04792 denotes HSP27

test2

Id Subject Object Predicate Lexical cue
T5 531-539 Positive_regulation denotes required
T6 543-551 Regulation denotes regulate
T7 552-557 Protein denotes HSP27
T8 558-573 Phosphorylation denotes phosphorylation
R4 T6 T5 themeOf regulate,required
R5 T7 T8 themeOf HSP27,phosphorylation
R6 T8 T6 themeOf phosphorylation,regulate