PMC:1942070 / 1115-1428
Annnotations
2_test
{"project":"2_test","denotations":[{"id":"17349631-10859332-30580518","span":{"begin":233,"end":234},"obj":"10859332"},{"id":"17349631-12506120-30580518","span":{"begin":233,"end":234},"obj":"12506120"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
MyTest
{"project":"MyTest","denotations":[{"id":"17349631-10859332-30580518","span":{"begin":233,"end":234},"obj":"10859332"},{"id":"17349631-12506120-30580518","span":{"begin":233,"end":234},"obj":"12506120"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T543","span":{"begin":1,"end":6},"obj":"CD"},{"id":"T544","span":{"begin":7,"end":14},"obj":"NN"},{"id":"T545","span":{"begin":14,"end":15},"obj":"-COLON-"},{"id":"T546","span":{"begin":16,"end":20},"obj":"NN"},{"id":"T547","span":{"begin":20,"end":21},"obj":"-COMMA-"},{"id":"T548","span":{"begin":22,"end":26},"obj":"NN"},{"id":"T549","span":{"begin":27,"end":30},"obj":"CC"},{"id":"T550","span":{"begin":31,"end":35},"obj":"NN"},{"id":"T551","span":{"begin":37,"end":41},"obj":"JJ"},{"id":"T552","span":{"begin":42,"end":46},"obj":"NN"},{"id":"T553","span":{"begin":47,"end":52},"obj":"NN"},{"id":"T554","span":{"begin":53,"end":60},"obj":"VB"},{"id":"T555","span":{"begin":61,"end":63},"obj":"IN"},{"id":"T556","span":{"begin":64,"end":69},"obj":"JJ"},{"id":"T557","span":{"begin":70,"end":73},"obj":"CD"},{"id":"T558","span":{"begin":74,"end":77},"obj":"NN"},{"id":"T559","span":{"begin":78,"end":86},"obj":"NN"},{"id":"T560","span":{"begin":87,"end":90},"obj":"CC"},{"id":"T561","span":{"begin":91,"end":94},"obj":"NN"},{"id":"T562","span":{"begin":95,"end":102},"obj":"NN"},{"id":"T563","span":{"begin":103,"end":106},"obj":"VB"},{"id":"T564","span":{"begin":107,"end":117},"obj":"RB"},{"id":"T565","span":{"begin":118,"end":124},"obj":"RB"},{"id":"T566","span":{"begin":125,"end":134},"obj":"VB"},{"id":"T567","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T568","span":{"begin":138,"end":152},"obj":"JJ"},{"id":"T569","span":{"begin":153,"end":158},"obj":"NN"},{"id":"T570","span":{"begin":158,"end":159},"obj":"-COMMA-"},{"id":"T571","span":{"begin":160,"end":165},"obj":"WRB"},{"id":"T572","span":{"begin":166,"end":170},"obj":"PRP"},{"id":"T573","span":{"begin":171,"end":174},"obj":"VB"},{"id":"T574","span":{"begin":175,"end":184},"obj":"VB"},{"id":"T575","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T576","span":{"begin":188,"end":196},"obj":"NN"},{"id":"T577","span":{"begin":197,"end":199},"obj":"TO"},{"id":"T578","span":{"begin":200,"end":207},"obj":"NN"},{"id":"T579","span":{"begin":208,"end":217},"obj":"NN"},{"id":"T580","span":{"begin":218,"end":229},"obj":"NN"},{"id":"T581","span":{"begin":230,"end":231},"obj":"-LRB-"},{"id":"T582","span":{"begin":231,"end":234},"obj":"CD"},{"id":"T583","span":{"begin":234,"end":235},"obj":"-RRB-"},{"id":"T584","span":{"begin":237,"end":238},"obj":"DT"},{"id":"T585","span":{"begin":239,"end":248},"obj":"VB"},{"id":"T586","span":{"begin":249,"end":259},"obj":"NN"},{"id":"T587","span":{"begin":260,"end":267},"obj":"NN"},{"id":"T588","span":{"begin":268,"end":275},"obj":"VB"},{"id":"T589","span":{"begin":276,"end":283},"obj":"NN"},{"id":"T590","span":{"begin":284,"end":293},"obj":"NN"},{"id":"T591","span":{"begin":294,"end":296},"obj":"TO"},{"id":"T592","span":{"begin":297,"end":301},"obj":"NN"},{"id":"T593","span":{"begin":302,"end":310},"obj":"VB"}],"relations":[{"id":"R441","pred":"arg1Of","subj":"T544","obj":"T543"},{"id":"R442","pred":"arg1Of","subj":"T544","obj":"T545"},{"id":"R443","pred":"arg1Of","subj":"T546","obj":"T547"},{"id":"R444","pred":"arg1Of","subj":"T547","obj":"T549"},{"id":"R445","pred":"arg2Of","subj":"T548","obj":"T547"},{"id":"R446","pred":"arg2Of","subj":"T549","obj":"T545"},{"id":"R447","pred":"arg2Of","subj":"T550","obj":"T549"},{"id":"R448","pred":"arg1Of","subj":"T553","obj":"T551"},{"id":"R449","pred":"arg1Of","subj":"T553","obj":"T552"},{"id":"R450","pred":"arg1Of","subj":"T553","obj":"T554"},{"id":"R451","pred":"arg1Of","subj":"T554","obj":"T560"},{"id":"R452","pred":"arg1Of","subj":"T557","obj":"T555"},{"id":"R453","pred":"arg1Of","subj":"T557","obj":"T556"},{"id":"R454","pred":"arg2Of","subj":"T559","obj":"T554"},{"id":"R455","pred":"arg1Of","subj":"T559","obj":"T557"},{"id":"R456","pred":"arg1Of","subj":"T559","obj":"T558"},{"id":"R457","pred":"arg1Of","subj":"T562","obj":"T561"},{"id":"R458","pred":"arg1Of","subj":"T562","obj":"T563"},{"id":"R459","pred":"arg2Of","subj":"T562","obj":"T566"},{"id":"R460","pred":"arg1Of","subj":"T565","obj":"T564"},{"id":"R461","pred":"arg2Of","subj":"T566","obj":"T560"},{"id":"R462","pred":"arg2Of","subj":"T566","obj":"T563"},{"id":"R463","pred":"arg1Of","subj":"T566","obj":"T565"},{"id":"R464","pred":"arg1Of","subj":"T566","obj":"T567"},{"id":"R465","pred":"arg2Of","subj":"T569","obj":"T567"},{"id":"R466","pred":"arg1Of","subj":"T569","obj":"T568"},{"id":"R467","pred":"arg1Of","subj":"T569","obj":"T570"},{"id":"R468","pred":"arg1Of","subj":"T569","obj":"T571"},{"id":"R469","pred":"arg1Of","subj":"T572","obj":"T573"},{"id":"R470","pred":"arg2Of","subj":"T572","obj":"T574"},{"id":"R471","pred":"arg2Of","subj":"T574","obj":"T571"},{"id":"R472","pred":"arg2Of","subj":"T574","obj":"T573"},{"id":"R473","pred":"arg1Of","subj":"T574","obj":"T575"},{"id":"R474","pred":"arg1Of","subj":"T574","obj":"T581"},{"id":"R475","pred":"arg1Of","subj":"T575","obj":"T577"},{"id":"R476","pred":"arg2Of","subj":"T576","obj":"T575"},{"id":"R477","pred":"arg3Of","subj":"T580","obj":"T575"},{"id":"R478","pred":"arg1Of","subj":"T580","obj":"T578"},{"id":"R479","pred":"arg1Of","subj":"T580","obj":"T579"},{"id":"R480","pred":"arg2Of","subj":"T582","obj":"T581"},{"id":"R481","pred":"arg3Of","subj":"T583","obj":"T581"},{"id":"R482","pred":"arg1Of","subj":"T587","obj":"T584"},{"id":"R483","pred":"arg2Of","subj":"T587","obj":"T585"},{"id":"R484","pred":"arg1Of","subj":"T587","obj":"T586"},{"id":"R485","pred":"arg1Of","subj":"T587","obj":"T588"},{"id":"R486","pred":"arg1Of","subj":"T587","obj":"T593"},{"id":"R487","pred":"arg2Of","subj":"T590","obj":"T588"},{"id":"R488","pred":"arg1Of","subj":"T590","obj":"T589"},{"id":"R489","pred":"arg1Of","subj":"T590","obj":"T591"},{"id":"R490","pred":"arg2Of","subj":"T592","obj":"T591"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1019","span":{"begin":1,"end":6},"obj":"CD"},{"id":"T1020","span":{"begin":7,"end":14},"obj":"NNS"},{"id":"T1021","span":{"begin":14,"end":15},"obj":":"},{"id":"T1022","span":{"begin":16,"end":20},"obj":"NNP"},{"id":"T1023","span":{"begin":20,"end":21},"obj":","},{"id":"T1024","span":{"begin":22,"end":26},"obj":"NNP"},{"id":"T1025","span":{"begin":27,"end":30},"obj":"CC"},{"id":"T1026","span":{"begin":31,"end":35},"obj":"NNP"},{"id":"T1027","span":{"begin":35,"end":36},"obj":"."},{"id":"T1028","span":{"begin":37,"end":41},"obj":"JJS"},{"id":"T1029","span":{"begin":42,"end":46},"obj":"NN"},{"id":"T1030","span":{"begin":47,"end":52},"obj":"NNS"},{"id":"T1031","span":{"begin":53,"end":60},"obj":"VBP"},{"id":"T1032","span":{"begin":61,"end":63},"obj":"IN"},{"id":"T1033","span":{"begin":64,"end":69},"obj":"JJS"},{"id":"T1034","span":{"begin":70,"end":73},"obj":"CD"},{"id":"T1035","span":{"begin":74,"end":77},"obj":"NNP"},{"id":"T1036","span":{"begin":78,"end":86},"obj":"NNS"},{"id":"T1037","span":{"begin":87,"end":90},"obj":"CC"},{"id":"T1038","span":{"begin":91,"end":94},"obj":"NNP"},{"id":"T1039","span":{"begin":95,"end":102},"obj":"NNS"},{"id":"T1040","span":{"begin":103,"end":106},"obj":"VBP"},{"id":"T1041","span":{"begin":107,"end":117},"obj":"RB"},{"id":"T1042","span":{"begin":118,"end":124},"obj":"RB"},{"id":"T1043","span":{"begin":125,"end":134},"obj":"VBN"},{"id":"T1044","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T1045","span":{"begin":138,"end":152},"obj":"JJ"},{"id":"T1046","span":{"begin":153,"end":158},"obj":"NNS"},{"id":"T1047","span":{"begin":158,"end":159},"obj":","},{"id":"T1048","span":{"begin":160,"end":165},"obj":"WRB"},{"id":"T1049","span":{"begin":166,"end":170},"obj":"PRP"},{"id":"T1050","span":{"begin":171,"end":174},"obj":"VBP"},{"id":"T1051","span":{"begin":175,"end":184},"obj":"VBN"},{"id":"T1052","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T1053","span":{"begin":188,"end":196},"obj":"NN"},{"id":"T1054","span":{"begin":197,"end":199},"obj":"TO"},{"id":"T1055","span":{"begin":200,"end":207},"obj":"NN"},{"id":"T1056","span":{"begin":208,"end":217},"obj":"NNS"},{"id":"T1057","span":{"begin":218,"end":229},"obj":"NN"},{"id":"T1058","span":{"begin":230,"end":231},"obj":"NNP"},{"id":"T1059","span":{"begin":231,"end":234},"obj":"CD"},{"id":"T1060","span":{"begin":234,"end":235},"obj":"NNP"},{"id":"T1061","span":{"begin":235,"end":236},"obj":"."},{"id":"T1062","span":{"begin":237,"end":238},"obj":"DT"},{"id":"T1063","span":{"begin":239,"end":248},"obj":"JJ"},{"id":"T1064","span":{"begin":249,"end":259},"obj":"JJ"},{"id":"T1065","span":{"begin":260,"end":267},"obj":"NN"},{"id":"T1066","span":{"begin":268,"end":275},"obj":"VBG"},{"id":"T1067","span":{"begin":276,"end":283},"obj":"NN"},{"id":"T1068","span":{"begin":284,"end":293},"obj":"NNS"},{"id":"T1069","span":{"begin":294,"end":296},"obj":"TO"},{"id":"T1070","span":{"begin":297,"end":301},"obj":"NNS"},{"id":"T1071","span":{"begin":302,"end":310},"obj":"VBZ"}],"relations":[{"id":"R905","pred":"nummod","subj":"T1019","obj":"T1020"},{"id":"R908","pred":"ROOT","subj":"T1022","obj":"T1022"},{"id":"R909","pred":"punct","subj":"T1023","obj":"T1022"},{"id":"R910","pred":"conj","subj":"T1024","obj":"T1022"},{"id":"R911","pred":"cc","subj":"T1025","obj":"T1024"},{"id":"R912","pred":"conj","subj":"T1026","obj":"T1024"},{"id":"R914","pred":"amod","subj":"T1028","obj":"T1030"},{"id":"R915","pred":"compound","subj":"T1029","obj":"T1030"},{"id":"R916","pred":"nsubj","subj":"T1030","obj":"T1031"},{"id":"R917","pred":"ROOT","subj":"T1031","obj":"T1031"},{"id":"R918","pred":"advmod","subj":"T1032","obj":"T1033"},{"id":"R919","pred":"advmod","subj":"T1033","obj":"T1034"},{"id":"R920","pred":"nummod","subj":"T1034","obj":"T1036"},{"id":"R921","pred":"compound","subj":"T1035","obj":"T1036"},{"id":"R922","pred":"dobj","subj":"T1036","obj":"T1031"},{"id":"R923","pred":"cc","subj":"T1037","obj":"T1031"},{"id":"R924","pred":"compound","subj":"T1038","obj":"T1039"},{"id":"R925","pred":"nsubj","subj":"T1039","obj":"T1040"},{"id":"R926","pred":"auxpass","subj":"T1040","obj":"T1043"},{"id":"R927","pred":"advmod","subj":"T1041","obj":"T1042"},{"id":"R928","pred":"advmod","subj":"T1042","obj":"T1043"},{"id":"R929","pred":"conj","subj":"T1043","obj":"T1031"},{"id":"R930","pred":"prep","subj":"T1044","obj":"T1043"},{"id":"R931","pred":"amod","subj":"T1045","obj":"T1046"},{"id":"R932","pred":"pobj","subj":"T1046","obj":"T1044"},{"id":"R933","pred":"punct","subj":"T1047","obj":"T1043"},{"id":"R934","pred":"advmod","subj":"T1048","obj":"T1051"},{"id":"R935","pred":"nsubjpass","subj":"T1049","obj":"T1051"},{"id":"R936","pred":"auxpass","subj":"T1050","obj":"T1051"},{"id":"R937","pred":"advcl","subj":"T1051","obj":"T1043"},{"id":"R938","pred":"prep","subj":"T1052","obj":"T1051"},{"id":"R939","pred":"pobj","subj":"T1053","obj":"T1052"},{"id":"R940","pred":"prep","subj":"T1054","obj":"T1053"},{"id":"R941","pred":"compound","subj":"T1055","obj":"T1056"},{"id":"R942","pred":"compound","subj":"T1056","obj":"T1057"},{"id":"R943","pred":"pobj","subj":"T1057","obj":"T1054"},{"id":"R944","pred":"compound","subj":"T1058","obj":"T1060"},{"id":"R945","pred":"compound","subj":"T1059","obj":"T1060"},{"id":"R946","pred":"appos","subj":"T1060","obj":"T1057"},{"id":"R947","pred":"punct","subj":"T1061","obj":"T1043"},{"id":"R948","pred":"det","subj":"T1062","obj":"T1065"},{"id":"R949","pred":"amod","subj":"T1063","obj":"T1065"},{"id":"R950","pred":"amod","subj":"T1064","obj":"T1065"},{"id":"R951","pred":"nsubj","subj":"T1065","obj":"T1071"},{"id":"R952","pred":"acl","subj":"T1066","obj":"T1065"},{"id":"R953","pred":"compound","subj":"T1067","obj":"T1068"},{"id":"R954","pred":"dobj","subj":"T1068","obj":"T1066"},{"id":"R955","pred":"prep","subj":"T1069","obj":"T1066"},{"id":"R956","pred":"pobj","subj":"T1070","obj":"T1069"},{"id":"R957","pred":"ROOT","subj":"T1071","obj":"T1071"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T504","span":{"begin":249,"end":259},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T506","span":{"begin":249,"end":267},"obj":"http://purl.obolibrary.org/obo/GO_0007165"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T1486","span":{"begin":42,"end":46},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
sentences
{"project":"sentences","denotations":[{"id":"T490","span":{"begin":37,"end":236},"obj":"Sentence"},{"id":"T13","span":{"begin":37,"end":236},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T1575","span":{"begin":16,"end":20},"obj":"Protein"},{"id":"T1576","span":{"begin":22,"end":26},"obj":"Protein"},{"id":"T1577","span":{"begin":31,"end":35},"obj":"Protein"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T1591","span":{"begin":16,"end":20},"obj":"Protein"},{"id":"T1592","span":{"begin":22,"end":26},"obj":"Protein"},{"id":"T1593","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T1594","span":{"begin":74,"end":77},"obj":"Protein"},{"id":"T1595","span":{"begin":91,"end":94},"obj":"Protein"},{"id":"T1596","span":{"begin":53,"end":60},"obj":"Gene_expression"},{"id":"T1597","span":{"begin":125,"end":134},"obj":"Gene_expression"},{"id":"T1598","span":{"begin":297,"end":301},"obj":"Protein"}],"relations":[{"id":"R1401","pred":"themeOf","subj":"T1594","obj":"T1596"},{"id":"R1407","pred":"themeOf","subj":"T1595","obj":"T1597"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T476","span":{"begin":16,"end":20},"obj":"Protein"},{"id":"T477","span":{"begin":22,"end":26},"obj":"Protein"},{"id":"T478","span":{"begin":31,"end":35},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T986","span":{"begin":16,"end":20},"obj":"P98161"},{"id":"T987","span":{"begin":31,"end":35},"obj":"Q99853"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}
test2
{"project":"test2","denotations":[{"id":"T463","span":{"begin":16,"end":20},"obj":"Protein"},{"id":"T464","span":{"begin":22,"end":26},"obj":"Protein"},{"id":"T465","span":{"begin":31,"end":35},"obj":"Protein"}],"text":" three members: PKD1, PKD2 and PKD3. Most cell types express at least two PKD isoforms but PKD enzymes are especially highly expressed in haematopoietic cells, where they are activated in response to antigen receptors stimulation [2,3]. A conserved signalling pathway linking antigen receptors to PKDs involves th"}