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PMC:1942070 / 10399-10702 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5273 0-7 RB denotes However
T5274 7-8 -COMMA- denotes ,
T5275 9-20 JJ denotes BCR-induced
T5276 21-24 NN denotes Erk
T5277 25-40 NN denotes phosphorylation
T5278 41-44 VB denotes was
T5279 45-49 RB denotes also
T5280 50-57 VB denotes reduced
T5281 58-60 IN denotes in
T5282 61-81 JJ denotes PKD1/3−/−-Flag-PKD3+
T5283 82-83 NN denotes B
T5284 84-89 NN denotes cells
T5285 90-91 -LRB- denotes (
T5286 91-95 NN denotes data
T5287 96-99 RB denotes not
T5288 100-105 VB denotes shown
T5289 105-106 -RRB- denotes )
T5290 107-117 VB denotes suggesting
T5291 118-122 IN denotes that
T5292 123-130 VB denotes reduced
T5293 131-134 NN denotes BCR
T5294 135-141 NN denotes levels
T5295 142-144 IN denotes on
T5296 145-148 DT denotes the
T5297 149-156 NN denotes surface
T5298 157-159 IN denotes of
T5299 160-169 NN denotes PKD1/3−/−
T5300 170-171 -LRB- denotes (
T5301 171-174 CC denotes and
T5302 175-195 JJ denotes PKD1/3−/−-Flag-PKD3+
T5303 195-196 -RRB- denotes )
T5304 197-198 NN denotes B
T5305 199-204 NN denotes cells
T5306 205-208 MD denotes may
T5307 209-215 PRP denotes itself
T5308 216-222 VB denotes impact
T5309 223-225 IN denotes on
T5310 226-229 DT denotes the
T5311 230-238 NN denotes strength
T5312 239-241 IN denotes of
T5313 242-252 NN denotes activation
T5314 253-255 IN denotes of
T5315 256-260 DT denotes this
T5316 261-269 JJ denotes specific
T5317 270-283 JJ denotes intracellular
T5318 284-294 NN denotes signalling
T5319 295-302 NN denotes pathway
R4176 T5277 T5275 arg1Of phosphorylation,BCR-induced
R4177 T5277 T5276 arg1Of phosphorylation,Erk
R4178 T5277 T5278 arg1Of phosphorylation,was
R4179 T5277 T5280 arg2Of phosphorylation,reduced
R4180 T5280 T5273 arg1Of reduced,However
R4181 T5280 T5274 arg1Of reduced,","
R4182 T5280 T5278 arg2Of reduced,was
R4183 T5280 T5279 arg1Of reduced,also
R4184 T5280 T5281 arg1Of reduced,in
R4185 T5280 T5290 modOf reduced,suggesting
R4186 T5284 T5281 arg2Of cells,in
R4187 T5284 T5282 arg1Of cells,PKD1/3−/−-Flag-PKD3+
R4188 T5284 T5283 arg1Of cells,B
R4189 T5284 T5285 arg1Of cells,(
R4190 T5286 T5285 arg2Of data,(
R4191 T5286 T5288 arg2Of data,shown
R4192 T5288 T5287 arg1Of shown,not
R4193 T5289 T5285 arg3Of ),(
R4194 T5294 T5292 arg2Of levels,reduced
R4195 T5294 T5293 arg1Of levels,BCR
R4196 T5294 T5295 arg1Of levels,on
R4197 T5294 T5306 arg1Of levels,may
R4198 T5294 T5308 arg1Of levels,impact
R4199 T5297 T5295 arg2Of surface,on
R4200 T5297 T5296 arg1Of surface,the
R4201 T5297 T5298 arg1Of surface,of
R4202 T5299 T5300 arg1Of PKD1/3−/−,(
R4203 T5302 T5300 arg2Of PKD1/3−/−-Flag-PKD3+,(
R4204 T5302 T5301 arg1Of PKD1/3−/−-Flag-PKD3+,and
R4205 T5303 T5300 arg3Of ),(
R4206 T5305 T5298 arg2Of cells,of
R4207 T5305 T5299 arg1Of cells,PKD1/3−/−
R4208 T5305 T5304 arg1Of cells,B
R4209 T5308 T5290 arg2Of impact,suggesting
R4210 T5308 T5291 arg1Of impact,that
R4211 T5308 T5306 arg2Of impact,may
R4212 T5308 T5307 arg1Of impact,itself
R4213 T5308 T5309 arg1Of impact,on
R4214 T5311 T5309 arg2Of strength,on
R4215 T5311 T5310 arg1Of strength,the
R4216 T5311 T5312 arg1Of strength,of
R4217 T5313 T5312 arg2Of activation,of
R4218 T5313 T5314 arg1Of activation,of
R4219 T5319 T5314 arg2Of pathway,of
R4220 T5319 T5315 arg1Of pathway,this
R4221 T5319 T5316 arg1Of pathway,specific
R4222 T5319 T5317 arg1Of pathway,intracellular
R4223 T5319 T5318 arg1Of pathway,signalling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6035 0-7 RB denotes However
T6036 7-8 , denotes ,
T6037 9-20 JJ denotes BCR-induced
T6038 21-24 NNP denotes Erk
T6039 25-40 NN denotes phosphorylation
T6040 41-44 VBD denotes was
T6041 45-49 RB denotes also
T6042 50-57 VBN denotes reduced
T6043 58-60 IN denotes in
T6044 61-67 CD denotes PKD1/3
T6045 67-68 CD denotes −
T6046 68-69 NN denotes /
T6047 69-70 SYM denotes −
T6048 70-71 : denotes -
T6049 71-80 NN denotes Flag-PKD3
T6050 80-81 NN denotes +
T6051 82-83 NNP denotes B
T6052 84-89 NNS denotes cells
T6053 90-91 -LRB- denotes (
T6054 91-95 NNS denotes data
T6055 96-99 RB denotes not
T6056 100-105 VBN denotes shown
T6057 105-106 -RRB- denotes )
T6058 107-117 VBG denotes suggesting
T6059 118-122 IN denotes that
T6060 123-130 VBN denotes reduced
T6061 131-134 NNP denotes BCR
T6062 135-141 NNS denotes levels
T6063 142-144 IN denotes on
T6064 145-148 DT denotes the
T6065 149-156 NN denotes surface
T6066 157-159 IN denotes of
T6067 160-166 CD denotes PKD1/3
T6068 166-167 CD denotes −
T6069 167-168 NN denotes /
T6070 168-169 NN denotes −
T6071 170-171 -LRB- denotes (
T6072 171-174 CC denotes and
T6073 175-181 NNP denotes PKD1/3
T6074 181-182 VBD denotes −
T6075 182-183 CD denotes /
T6076 183-184 SYM denotes −
T6077 184-185 : denotes -
T6078 185-194 NN denotes Flag-PKD3
T6079 194-195 NN denotes +
T6080 195-196 -RRB- denotes )
T6081 197-198 NNP denotes B
T6082 199-204 NNS denotes cells
T6083 205-208 MD denotes may
T6084 209-215 PRP denotes itself
T6085 216-222 VB denotes impact
T6086 223-225 IN denotes on
T6087 226-229 DT denotes the
T6088 230-238 NN denotes strength
T6089 239-241 IN denotes of
T6090 242-252 NN denotes activation
T6091 253-255 IN denotes of
T6092 256-260 DT denotes this
T6093 261-269 JJ denotes specific
T6094 270-283 JJ denotes intracellular
T6095 284-294 NN denotes signalling
T6096 295-302 NN denotes pathway
T6097 302-303 . denotes .
R4888 T6035 T6042 advmod However,reduced
R4889 T6036 T6042 punct ",",reduced
R4890 T6037 T6039 amod BCR-induced,phosphorylation
R4891 T6038 T6039 compound Erk,phosphorylation
R4892 T6039 T6042 nsubjpass phosphorylation,reduced
R4893 T6040 T6042 auxpass was,reduced
R4894 T6041 T6042 advmod also,reduced
R4895 T6042 T6042 ROOT reduced,reduced
R4896 T6043 T6042 prep in,reduced
R4897 T6044 T6052 nummod PKD1/3,cells
R4898 T6045 T6046 nummod −,/
R4899 T6046 T6052 compound /,cells
R4900 T6047 T6049 punct −,Flag-PKD3
R4901 T6048 T6049 punct -,Flag-PKD3
R4902 T6049 T6052 compound Flag-PKD3,cells
R4903 T6050 T6052 compound +,cells
R4904 T6051 T6052 compound B,cells
R4905 T6052 T6043 pobj cells,in
R4906 T6053 T6052 punct (,cells
R4907 T6054 T6054 ROOT data,data
R4908 T6055 T6056 neg not,shown
R4909 T6056 T6054 acl shown,data
R4910 T6057 T6054 punct ),data
R4911 T6058 T6042 advcl suggesting,reduced
R4912 T6059 T6074 mark that,−
R4913 T6060 T6062 amod reduced,levels
R4914 T6061 T6062 compound BCR,levels
R4915 T6062 T6074 nsubj levels,−
R4916 T6063 T6062 prep on,levels
R4917 T6064 T6065 det the,surface
R4918 T6065 T6063 pobj surface,on
R4919 T6066 T6065 prep of,surface
R4920 T6067 T6070 nummod PKD1/3,−
R4921 T6068 T6070 nummod −,−
R4922 T6069 T6070 compound /,−
R4923 T6070 T6066 pobj −,of
R4924 T6071 T6070 punct (,−
R4925 T6072 T6070 cc and,−
R4926 T6073 T6074 nsubj PKD1/3,−
R4927 T6074 T6058 ccomp −,suggesting
R4928 T6075 T6079 nummod /,+
R4929 T6076 T6078 punct −,Flag-PKD3
R4930 T6077 T6078 punct -,Flag-PKD3
R4939 T6086 T6085 prep on,impact
R4940 T6087 T6088 det the,strength
R4941 T6088 T6086 pobj strength,on
R4942 T6089 T6088 prep of,strength
R4943 T6090 T6089 pobj activation,of
R4944 T6091 T6090 prep of,activation
R4945 T6092 T6096 det this,pathway
R4946 T6093 T6096 amod specific,pathway
R4947 T6094 T6096 amod intracellular,pathway
R4948 T6095 T6096 compound signalling,pathway
R4949 T6096 T6091 pobj pathway,of
R4950 T6097 T6085 punct .,impact
R4931 T6078 T6079 compound Flag-PKD3,+
R4932 T6079 T6074 appos +,−
R4933 T6080 T6074 punct ),−
R4934 T6081 T6082 amod B,cells
R4935 T6082 T6085 nsubj cells,impact
R4936 T6083 T6085 aux may,impact
R4937 T6084 T6085 nsubj itself,impact
R4938 T6085 T6085 ROOT impact,impact

GO-BP

Id Subject Object Predicate Lexical cue
T6522 284-294 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T6531 25-40 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T6544 270-302 http://purl.obolibrary.org/obo/GO_0030522 denotes intracellular signalling pathway
T6545 270-302 http://purl.obolibrary.org/obo/GO_0035556 denotes intracellular signalling pathway
T6546 270-302 http://purl.obolibrary.org/obo/GO_1902532 denotes intracellular signalling pathway
T6547 270-302 http://purl.obolibrary.org/obo/GO_1902531 denotes intracellular signalling pathway
T6548 270-302 http://purl.obolibrary.org/obo/GO_1902533 denotes intracellular signalling pathway

GO-CC

Id Subject Object Predicate Lexical cue
T6565 84-89 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6566 199-204 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6576 270-283 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T5016 0-303 Sentence denotes However, BCR-induced Erk phosphorylation was also reduced in PKD1/3−/−-Flag-PKD3+ B cells (data not shown) suggesting that reduced BCR levels on the surface of PKD1/3−/− (and PKD1/3−/−-Flag-PKD3+) B cells may itself impact on the strength of activation of this specific intracellular signalling pathway.
T71 0-303 Sentence denotes However, BCR-induced Erk phosphorylation was also reduced in PKD1/3−/−-Flag-PKD3+ B cells (data not shown) suggesting that reduced BCR levels on the surface of PKD1/3−/− (and PKD1/3−/−-Flag-PKD3+) B cells may itself impact on the strength of activation of this specific intracellular signalling pathway.

events-check-again

Id Subject Object Predicate Lexical cue
T6942 165-166 Protein denotes 3
T6943 175-179 Protein denotes PKD1
T6938 61-65 Protein denotes PKD1
T6939 66-67 Protein denotes 3
T6940 76-80 Protein denotes PKD3
T6941 160-164 Protein denotes PKD1
T6944 180-181 Protein denotes 3
T6945 190-194 Protein denotes PKD3

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4975 61-65 Protein denotes PKD1
T4976 66-67 Protein denotes 3
T4977 76-80 Protein denotes PKD3
T4978 160-164 Protein denotes PKD1
T4979 165-166 Protein denotes 3
T4980 175-179 Protein denotes PKD1
T4981 180-181 Protein denotes 3
T4982 190-194 Protein denotes PKD3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5723 9-12 P11274 denotes BCR
T5724 61-65 P98161 denotes PKD1
T5725 76-80 Q99853 denotes PKD3
T5726 131-134 P11274 denotes BCR
T5727 160-164 P98161 denotes PKD1
T5728 175-179 P98161 denotes PKD1
T5729 190-194 Q99853 denotes PKD3

test2

Id Subject Object Predicate Lexical cue
T4909 13-20 Positive_regulation denotes induced
T4910 25-40 Phosphorylation denotes phosphorylation
T4911 50-57 Negative_regulation denotes reduced
T4912 61-65 Protein denotes PKD1
T4913 66-67 Protein denotes 3
T4914 76-80 Protein denotes PKD3
T4915 160-164 Protein denotes PKD1
T4916 165-166 Protein denotes 3
T4917 175-179 Protein denotes PKD1
T4918 180-181 Protein denotes 3
T4919 190-194 Protein denotes PKD3
R3898 T4909 T4911 themeOf induced,reduced
R3899 T4910 T4909 themeOf phosphorylation,induced
R3900 T4910 T4911 themeOf phosphorylation,reduced