> top > docs > PMC:1941754 > spans > 41229-41937 > annotations

PMC:1941754 / 41229-41937 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T8793 361-365 VBD denotes were
T8722 0-5 JJ denotes Total
T8723 6-9 NN denotes RNA
T8724 14-22 VBN denotes isolated
T8725 10-13 VBD denotes was
T8726 23-27 IN denotes from
T8727 28-33 JJ denotes adult
T8728 34-40 NNS denotes testes
T8729 41-45 IN denotes with
T8730 46-49 DT denotes the
T8731 62-65 NNP denotes Kit
T8732 50-56 NNP denotes RNeasy
T8733 57-61 NNP denotes Mini
T8734 66-67 -LRB- denotes (
T8735 67-73 NNP denotes Qiagen
T8736 73-75 , denotes ,
T8737 75-96 NN denotes http://www.qiagen.com
T8738 96-97 -RRB- denotes )
T8739 97-99 , denotes ,
T8740 99-102 CC denotes and
T8741 103-106 CD denotes 4.0
T8742 107-109 NN denotes μg
T8743 123-129 VBN denotes primed
T8744 110-113 VBD denotes was
T8745 114-119 NN denotes oligo
T8746 120-122 NN denotes dT
T8747 122-123 HYPH denotes –
T8748 130-133 CC denotes and
T8749 134-141 RB denotes reverse
T8750 142-153 VBN denotes transcribed
T8751 141-142 HYPH denotes -
T8752 154-158 IN denotes with
T8753 159-170 NNP denotes Superscript
T8754 171-173 CD denotes II
T8755 174-175 -LRB- denotes (
T8756 175-185 NNP denotes Stratagene
T8757 185-187 , denotes ,
T8758 187-212 NN denotes http://www.stratagene.com
T8759 212-213 -RRB- denotes )
T8760 213-214 . denotes .
T8761 214-337 sentence denotes The entire Trip13 protein-coding sequence was amplified with primers 5′-ATGGACGAGGCGGTG-3′ and 5′-TCAAACATAAGCTGAAAGTT-3′.
T8762 215-218 DT denotes The
T8763 248-256 NN denotes sequence
T8764 219-225 JJ denotes entire
T8765 226-232 NN denotes Trip13
T8766 233-240 NN denotes protein
T8767 241-247 VBG denotes coding
T8768 240-241 HYPH denotes -
T8769 261-270 VBN denotes amplified
T8770 257-260 VBD denotes was
T8771 271-275 IN denotes with
T8772 276-283 NNS denotes primers
T8773 287-302 NN denotes ATGGACGAGGCGGTG
T8774 284-285 CD denotes 5
T8775 285-286 SYM denotes ′
T8776 286-287 HYPH denotes -
T8777 302-303 HYPH denotes -
T8778 303-304 CD denotes 3
T8779 304-305 SYM denotes ′
T8780 306-309 CC denotes and
T8781 310-311 CD denotes 5
T8782 313-333 NN denotes TCAAACATAAGCTGAAAGTT
T8783 311-312 SYM denotes ′
T8784 312-313 HYPH denotes -
T8785 333-334 HYPH denotes -
T8786 334-335 CD denotes 3
T8787 335-336 SYM denotes ′
T8788 336-337 . denotes .
T8789 337-449 sentence denotes The cycling conditions were: 94 °C 2 min; 94 °C 30s, 55 °C 45 s, and 72 °C 80 s for 35 cycles; and 72 °C 2 min.
T8790 338-341 DT denotes The
T8791 350-360 NNS denotes conditions
T8792 342-349 NN denotes cycling
T8794 365-367 : denotes :
T8795 367-369 CD denotes 94
T8796 370-372 NN denotes °C
T8797 373-374 CD denotes 2
T8798 375-378 NN denotes min
T8799 378-379 : denotes ;
T8800 380-382 CD denotes 94
T8801 383-385 NN denotes °C
T8802 386-388 CD denotes 30
T8803 388-389 NN denotes s
T8804 389-391 , denotes ,
T8805 391-393 CD denotes 55
T8806 394-396 NN denotes °C
T8807 397-399 CD denotes 45
T8808 400-401 NN denotes s
T8809 401-403 , denotes ,
T8810 403-406 CC denotes and
T8811 407-409 CD denotes 72
T8812 410-412 NN denotes °C
T8813 413-415 CD denotes 80
T8814 416-417 NN denotes s
T8815 418-421 IN denotes for
T8816 422-424 CD denotes 35
T8817 425-431 NNS denotes cycles
T8818 431-432 : denotes ;
T8819 433-436 CC denotes and
T8820 437-439 CD denotes 72
T8821 440-442 NN denotes °C
T8822 443-444 CD denotes 2
T8823 445-448 NN denotes min
T8824 448-449 . denotes .
T8825 449-595 sentence denotes The primers for amplifying the Med31 coding sequence as control were : 5′-ATGGCCGCGGCCGTCGCTATGG-3′ and 5′-TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC-3′.
T8826 450-453 DT denotes The
T8827 454-461 NNS denotes primers
T8828 514-518 VBD denotes were
T8829 462-465 IN denotes for
T8830 466-476 VBG denotes amplifying
T8831 477-480 DT denotes the
T8832 494-502 NN denotes sequence
T8833 481-486 NN denotes Med31
T8834 487-493 NN denotes coding
T8835 503-505 IN denotes as
T8836 506-513 NN denotes control
T8837 519-521 : denotes :
T8838 521-522 CD denotes 5
T8839 524-546 NN denotes ATGGCCGCGGCCGTCGCTATGG
T8840 522-523 SYM denotes ′
T8841 523-524 HYPH denotes -
T8842 546-547 HYPH denotes -
T8843 547-548 CD denotes 3
T8844 548-549 SYM denotes ′
T8845 550-553 CC denotes and
T8846 554-555 CD denotes 5
T8847 557-591 NN denotes TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC
T8848 555-556 SYM denotes ′
T8849 556-557 HYPH denotes -
T8850 591-592 HYPH denotes -
T8851 592-593 CD denotes 3
T8852 593-594 SYM denotes ′
T8853 594-595 . denotes .
T8854 595-708 sentence denotes The cycling conditions were: 94 °C 2 min; 94 °C 30 s, 55 °C 30 s, and 72 °C 35 s for 35 cycles; and 72 °C 2 min.
T8855 596-599 DT denotes The
T8856 608-618 NNS denotes conditions
T8857 600-607 NN denotes cycling
T8858 619-623 VBD denotes were
T8859 623-625 : denotes :
T8860 625-627 CD denotes 94
T8861 628-630 NN denotes °C
T8862 631-632 CD denotes 2
T8863 633-636 NN denotes min
T8864 636-637 : denotes ;
T8865 638-640 CD denotes 94
T8866 641-643 NN denotes °C
T8867 644-646 CD denotes 30
T8868 647-648 NN denotes s
T8869 648-650 , denotes ,
T8870 650-652 CD denotes 55
T8871 653-655 NN denotes °C
T8872 656-658 CD denotes 30
T8873 659-660 NN denotes s
T8874 660-662 , denotes ,
T8875 662-665 CC denotes and
T8876 666-668 CD denotes 72
T8877 669-671 NN denotes °C
T8878 672-674 CD denotes 35
T8879 675-676 NN denotes s
T8880 677-680 IN denotes for
T8881 681-683 CD denotes 35
T8882 684-690 NNS denotes cycles
T8883 690-691 : denotes ;
T8884 692-695 CC denotes and
T8885 696-698 CD denotes 72
T8886 699-701 NN denotes °C
T8887 702-703 CD denotes 2
T8888 704-707 NN denotes min
T8889 707-708 . denotes .
R5873 T8722 T8723 amod Total,RNA
R5874 T8723 T8724 nsubjpass RNA,isolated
R5875 T8725 T8724 auxpass was,isolated
R5876 T8726 T8724 prep from,isolated
R5877 T8727 T8728 amod adult,testes
R5878 T8728 T8726 pobj testes,from
R5879 T8729 T8724 prep with,isolated
R5880 T8730 T8731 det the,Kit
R5881 T8731 T8729 pobj Kit,with
R5882 T8732 T8731 compound RNeasy,Kit
R5883 T8733 T8731 compound Mini,Kit
R5884 T8734 T8735 punct (,Qiagen
R5885 T8735 T8731 parataxis Qiagen,Kit
R5886 T8736 T8735 punct ", ",Qiagen
R5887 T8737 T8735 npadvmod http://www.qiagen.com,Qiagen
R5888 T8738 T8735 punct ),Qiagen
R5889 T8739 T8724 punct ", ",isolated
R5890 T8740 T8724 cc and,isolated
R5891 T8741 T8742 nummod 4.0,μg
R5892 T8742 T8743 nsubj μg,primed
R5893 T8743 T8724 conj primed,isolated
R5894 T8744 T8743 aux was,primed
R5895 T8745 T8746 compound oligo,dT
R5896 T8746 T8743 npadvmod dT,primed
R5897 T8747 T8743 punct –,primed
R5898 T8748 T8743 cc and,primed
R5899 T8749 T8750 advmod reverse,transcribed
R5900 T8750 T8743 conj transcribed,primed
R5901 T8751 T8750 punct -,transcribed
R5902 T8752 T8743 prep with,primed
R5903 T8753 T8752 pobj Superscript,with
R5904 T8754 T8753 nummod II,Superscript
R5905 T8755 T8756 punct (,Stratagene
R5906 T8756 T8753 parataxis Stratagene,Superscript
R5907 T8757 T8756 punct ", ",Stratagene
R5908 T8758 T8756 npadvmod http://www.stratagene.com,Stratagene
R5909 T8759 T8756 punct ),Stratagene
R5910 T8760 T8743 punct .,primed
R5911 T8762 T8763 det The,sequence
R5912 T8763 T8769 nsubjpass sequence,amplified
R5913 T8764 T8763 amod entire,sequence
R5914 T8765 T8763 nmod Trip13,sequence
R5915 T8766 T8767 npadvmod protein,coding
R5916 T8767 T8763 amod coding,sequence
R5917 T8768 T8767 punct -,coding
R5918 T8770 T8769 auxpass was,amplified
R5919 T8771 T8769 prep with,amplified
R5920 T8772 T8773 nmod primers,ATGGACGAGGCGGTG
R5921 T8773 T8771 pobj ATGGACGAGGCGGTG,with
R5922 T8774 T8773 nummod 5,ATGGACGAGGCGGTG
R5923 T8775 T8774 punct ′,5
R5924 T8776 T8773 punct -,ATGGACGAGGCGGTG
R5925 T8777 T8773 punct -,ATGGACGAGGCGGTG
R5926 T8778 T8773 nummod 3,ATGGACGAGGCGGTG
R5927 T8779 T8773 punct ′,ATGGACGAGGCGGTG
R5928 T8780 T8773 cc and,ATGGACGAGGCGGTG
R5929 T8781 T8782 nummod 5,TCAAACATAAGCTGAAAGTT
R5930 T8782 T8773 conj TCAAACATAAGCTGAAAGTT,ATGGACGAGGCGGTG
R5931 T8783 T8781 punct ′,5
R5932 T8784 T8782 punct -,TCAAACATAAGCTGAAAGTT
R5933 T8785 T8782 punct -,TCAAACATAAGCTGAAAGTT
R5934 T8786 T8782 nummod 3,TCAAACATAAGCTGAAAGTT
R5935 T8787 T8782 punct ′,TCAAACATAAGCTGAAAGTT
R5936 T8788 T8769 punct .,amplified
R5937 T8790 T8791 det The,conditions
R5938 T8791 T8793 nsubj conditions,were
R5939 T8792 T8791 compound cycling,conditions
R5940 T8794 T8793 punct : ,were
R5941 T8795 T8796 nummod 94,°C
R5942 T8796 T8793 attr °C,were
R5943 T8797 T8798 nummod 2,min
R5944 T8798 T8796 npadvmod min,°C
R5945 T8799 T8796 punct ;,°C
R5946 T8800 T8801 nummod 94,°C
R5947 T8801 T8796 conj °C,°C
R5948 T8802 T8803 nummod 30,s
R5949 T8803 T8801 npadvmod s,°C
R5950 T8804 T8801 punct ", ",°C
R5951 T8805 T8806 nummod 55,°C
R5952 T8806 T8801 conj °C,°C
R5953 T8807 T8808 nummod 45,s
R5954 T8808 T8806 npadvmod s,°C
R5955 T8809 T8806 punct ", ",°C
R5956 T8810 T8806 cc and,°C
R5957 T8811 T8812 nummod 72,°C
R5958 T8812 T8806 conj °C,°C
R5959 T8813 T8814 nummod 80,s
R5960 T8814 T8812 npadvmod s,°C
R5961 T8815 T8812 prep for,°C
R5962 T8816 T8817 nummod 35,cycles
R5963 T8817 T8815 pobj cycles,for
R5964 T8818 T8801 punct ;,°C
R5965 T8819 T8801 cc and,°C
R5966 T8820 T8821 nummod 72,°C
R5967 T8821 T8801 conj °C,°C
R5968 T8822 T8823 nummod 2,min
R5969 T8823 T8821 npadvmod min,°C
R5970 T8824 T8793 punct .,were
R5971 T8826 T8827 det The,primers
R5972 T8827 T8828 nsubj primers,were
R5973 T8829 T8827 prep for,primers
R5974 T8830 T8829 pcomp amplifying,for
R5975 T8831 T8832 det the,sequence
R5976 T8832 T8830 dobj sequence,amplifying
R5977 T8833 T8832 compound Med31,sequence
R5978 T8834 T8832 compound coding,sequence
R5979 T8835 T8830 prep as,amplifying
R5980 T8836 T8835 pobj control,as
R5981 T8837 T8828 punct : ,were
R5982 T8838 T8839 nummod 5,ATGGCCGCGGCCGTCGCTATGG
R5983 T8839 T8828 attr ATGGCCGCGGCCGTCGCTATGG,were
R5984 T8840 T8838 punct ′,5
R5985 T8841 T8839 punct -,ATGGCCGCGGCCGTCGCTATGG
R5986 T8842 T8839 punct -,ATGGCCGCGGCCGTCGCTATGG
R5987 T8843 T8839 nummod 3,ATGGCCGCGGCCGTCGCTATGG
R5988 T8844 T8839 punct ′,ATGGCCGCGGCCGTCGCTATGG
R5989 T8845 T8839 cc and,ATGGCCGCGGCCGTCGCTATGG
R5990 T8846 T8847 nummod 5,TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC
R5991 T8847 T8839 conj TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC,ATGGCCGCGGCCGTCGCTATGG
R5992 T8848 T8846 punct ′,5
R5993 T8849 T8847 punct -,TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC
R5994 T8850 T8847 punct -,TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC
R5995 T8851 T8847 nummod 3,TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC
R5996 T8852 T8847 punct ′,TCATTTCCCTGCTGTGTTATTCTGCTGCTGCTGC
R5997 T8853 T8828 punct .,were
R5998 T8855 T8856 det The,conditions
R5999 T8856 T8858 nsubj conditions,were
R6000 T8857 T8856 compound cycling,conditions
R6001 T8859 T8858 punct : ,were
R6002 T8860 T8861 nummod 94,°C
R6003 T8861 T8858 attr °C,were
R6004 T8862 T8863 nummod 2,min
R6005 T8863 T8861 npadvmod min,°C
R6006 T8864 T8861 punct ;,°C
R6007 T8865 T8866 nummod 94,°C
R6008 T8866 T8861 conj °C,°C
R6009 T8867 T8868 nummod 30,s
R6010 T8868 T8866 npadvmod s,°C
R6011 T8869 T8866 punct ", ",°C
R6012 T8870 T8871 nummod 55,°C
R6013 T8871 T8866 conj °C,°C
R6014 T8872 T8873 nummod 30,s
R6015 T8873 T8871 npadvmod s,°C
R6016 T8874 T8871 punct ", ",°C
R6017 T8875 T8871 cc and,°C
R6018 T8876 T8877 nummod 72,°C
R6019 T8877 T8871 conj °C,°C
R6020 T8878 T8879 nummod 35,s
R6021 T8879 T8877 npadvmod s,°C
R6022 T8880 T8877 prep for,°C
R6023 T8881 T8882 nummod 35,cycles
R6024 T8882 T8880 pobj cycles,for
R6025 T8883 T8866 punct ;,°C
R6026 T8884 T8866 cc and,°C
R6027 T8885 T8886 nummod 72,°C
R6028 T8886 T8866 conj °C,°C
R6029 T8887 T8888 nummod 2,min
R6030 T8888 T8886 npadvmod min,°C
R6031 T8889 T8858 punct .,were

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8694 28-33 UBERON:0007023 denotes adult
T8695 34-40 UBERON:0000473 denotes testes
T8696 134-153 GO:0001171 denotes reverse-transcribed
T8697 226-232 PR:000016672 denotes Trip13
T8698 233-247 SO:0000010 denotes protein-coding
T8699 276-283 SO:0000112 denotes primers
T8700 454-461 SO:0000112 denotes primers
T8701 481-486 PR:000010303 denotes Med31

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8703 6-9 CHEBI_SO_EXT:RNA denotes RNA
T8704 28-33 UBERON:0007023 denotes adult
T8705 34-40 UBERON:0000473 denotes testes
T8706 114-119 CHEBI_SO_EXT:oligonucleotide denotes oligo
T8707 120-122 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T8708 134-153 GO:0001171 denotes reverse-transcribed
T8709 226-232 PR_EXT:000016672 denotes Trip13
T8710 233-240 CHEBI_PR_EXT:protein denotes protein
T8711 233-247 SO:0000010 denotes protein-coding
T8712 241-256 SO_EXT:coding_sequence denotes coding sequence
T8713 276-283 SO_EXT:0000112 denotes primers
T8714 454-461 SO_EXT:0000112 denotes primers
T8715 481-486 PR_EXT:000010303 denotes Med31
T8716 487-502 SO_EXT:coding_sequence denotes coding sequence