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PMC:1941754 / 25458-26993 JSONTXT

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Id Subject Object Predicate Lexical cue
T4933 0-2 TO denotes To
T4934 3-12 VB denotes determine
T4935 97-105 VBD denotes analyzed
T4936 13-15 IN denotes if
T4937 34-42 VBZ denotes prevents
T4938 16-22 NN denotes TRIP13
T4939 23-33 NN denotes deficiency
T4940 43-52 NN denotes apoptosis
T4941 53-62 VBN denotes triggered
T4942 63-65 IN denotes by
T4943 66-75 NN denotes asynapsis
T4944 76-78 IN denotes as
T4945 79-81 IN denotes in
T4946 82-84 NNP denotes C.
T4947 85-92 NNP denotes elegans
T4948 92-94 , denotes ,
T4949 94-96 PRP denotes we
T4950 106-110 NNS denotes mice
T4951 111-115 WDT denotes that
T4952 116-120 VBD denotes were
T4953 121-127 RB denotes doubly
T4954 128-134 NN denotes mutant
T4955 135-138 IN denotes for
T4956 139-144 NN denotes Spo11
T4957 145-148 CC denotes and
T4958 149-155 NN denotes Trip13
T4959 155-156 . denotes .
T4960 156-303 sentence denotes SPO11 is a transesterase that is essential for the creation of genetically programmed DSB during leptonema of many organisms, including mice [18].
T4961 157-162 NN denotes SPO11
T4962 163-165 VBZ denotes is
T4963 166-167 DT denotes a
T4964 168-181 NN denotes transesterase
T4965 182-186 WDT denotes that
T4966 187-189 VBZ denotes is
T4967 190-199 JJ denotes essential
T4968 200-203 IN denotes for
T4969 204-207 DT denotes the
T4970 208-216 NN denotes creation
T4971 217-219 IN denotes of
T4972 220-231 RB denotes genetically
T4973 232-242 VBN denotes programmed
T4974 243-246 NN denotes DSB
T4975 247-253 IN denotes during
T4976 254-263 NN denotes leptonema
T4977 264-266 IN denotes of
T4978 267-271 JJ denotes many
T4979 272-281 NNS denotes organisms
T4980 281-283 , denotes ,
T4981 283-292 VBG denotes including
T4982 293-297 NNS denotes mice
T4983 298-299 -LRB- denotes [
T4984 299-301 CD denotes 18
T4985 301-302 -RRB- denotes ]
T4986 302-303 . denotes .
T4987 303-425 sentence denotes In C. elegans, spo-11 mutant gametes have extensive asynapsis, which triggers PCH-2 dependent apoptosis in pachynema [2].
T4988 304-306 IN denotes In
T4989 341-345 VBP denotes have
T4990 307-309 NNP denotes C.
T4991 310-317 NNP denotes elegans
T4992 317-319 , denotes ,
T4993 319-322 NN denotes spo
T4994 333-340 NNS denotes gametes
T4995 322-323 HYPH denotes -
T4996 323-325 CD denotes 11
T4997 326-332 NN denotes mutant
T4998 346-355 JJ denotes extensive
T4999 356-365 NN denotes asynapsis
T5000 365-367 , denotes ,
T5001 367-372 WDT denotes which
T5002 373-381 VBZ denotes triggers
T5003 382-385 NN denotes PCH
T5004 388-397 JJ denotes dependent
T5005 385-386 HYPH denotes -
T5006 386-387 CD denotes 2
T5007 398-407 NN denotes apoptosis
T5008 408-410 IN denotes in
T5009 411-420 NN denotes pachynema
T5010 421-422 -LRB- denotes [
T5011 422-423 CD denotes 2
T5012 423-424 -RRB- denotes ]
T5013 424-425 . denotes .
T5014 425-628 sentence denotes In mice, Spo11 −/− spermatocytes are severely defective in homologous chromosome synapsis [34,35], and arrest with chromosomes in a state characteristic of the zygotene/pachytene transition (Figure 3H).
T5015 426-428 IN denotes In
T5016 459-462 VBP denotes are
T5017 429-433 NNS denotes mice
T5018 433-435 , denotes ,
T5019 435-440 NN denotes Spo11
T5020 445-458 NNS denotes spermatocytes
T5021 441-442 SYM denotes −
T5022 442-443 HYPH denotes /
T5023 443-444 SYM denotes −
T5024 463-471 RB denotes severely
T5025 472-481 JJ denotes defective
T5026 482-484 IN denotes in
T5027 485-495 JJ denotes homologous
T5028 507-515 NN denotes synapsis
T5029 496-506 NN denotes chromosome
T5030 516-517 -LRB- denotes [
T5031 520-522 CD denotes 35
T5032 517-519 CD denotes 34
T5033 519-520 , denotes ,
T5034 522-523 -RRB- denotes ]
T5035 523-525 , denotes ,
T5036 525-528 CC denotes and
T5037 529-535 VBP denotes arrest
T5038 536-540 IN denotes with
T5039 541-552 NNS denotes chromosomes
T5040 553-555 IN denotes in
T5041 556-557 DT denotes a
T5042 558-563 NN denotes state
T5043 564-578 JJ denotes characteristic
T5044 579-581 IN denotes of
T5045 582-585 DT denotes the
T5046 605-615 NN denotes transition
T5047 586-594 NN denotes zygotene
T5048 595-604 NN denotes pachytene
T5049 594-595 HYPH denotes /
T5050 616-617 -LRB- denotes (
T5051 624-626 NN denotes 3H
T5052 617-623 NN denotes Figure
T5053 626-627 -RRB- denotes )
T5054 627-628 . denotes .
T5055 628-826 sentence denotes Spermatocytes in Trip13Gt/Gt Spo11 −/− testes progressed maximally to that point before undergoing death (Figs 3I), well before the spindle checkpoint that eliminates achiasmate spermatocytes [36].
T5056 629-642 NNS denotes Spermatocytes
T5057 675-685 VBD denotes progressed
T5058 643-645 IN denotes in
T5059 646-654 NN denotes Trip13Gt
T5060 655-657 NN denotes Gt
T5061 654-655 HYPH denotes /
T5062 668-674 NNS denotes testes
T5063 658-663 NN denotes Spo11
T5064 664-665 SYM denotes −
T5065 665-666 HYPH denotes /
T5066 666-667 SYM denotes −
T5067 686-695 RB denotes maximally
T5068 696-698 IN denotes to
T5069 699-703 DT denotes that
T5070 704-709 NN denotes point
T5071 710-716 IN denotes before
T5072 717-727 VBG denotes undergoing
T5073 728-733 NN denotes death
T5074 734-735 -LRB- denotes (
T5075 740-742 NN denotes 3I
T5076 735-739 NNS denotes Figs
T5077 742-743 -RRB- denotes )
T5078 743-745 , denotes ,
T5079 745-749 RB denotes well
T5080 750-756 IN denotes before
T5081 757-760 DT denotes the
T5082 769-779 NN denotes checkpoint
T5083 761-768 NN denotes spindle
T5084 780-784 WDT denotes that
T5085 785-795 VBZ denotes eliminates
T5086 796-806 NN denotes achiasmate
T5087 807-820 NNS denotes spermatocytes
T5088 821-822 -LRB- denotes [
T5089 822-824 CD denotes 36
T5090 824-825 -RRB- denotes ]
T5091 825-826 . denotes .
T5092 826-976 sentence denotes There was no evidence of metaphase I spermatocytes or postmeiotic spermatids in these testes, unlike those seen in Trip13 single mutants (Figure 3G).
T5093 827-832 EX denotes There
T5094 833-836 VBD denotes was
T5095 837-839 DT denotes no
T5096 840-848 NN denotes evidence
T5097 849-851 IN denotes of
T5098 852-861 NN denotes metaphase
T5099 864-877 NNS denotes spermatocytes
T5100 862-863 CD denotes I
T5101 878-880 CC denotes or
T5102 881-892 JJ denotes postmeiotic
T5103 893-903 NNS denotes spermatids
T5104 904-906 IN denotes in
T5105 907-912 DT denotes these
T5106 913-919 NNS denotes testes
T5107 919-921 , denotes ,
T5108 921-927 IN denotes unlike
T5109 928-933 DT denotes those
T5110 934-938 VBN denotes seen
T5111 939-941 IN denotes in
T5112 942-948 NN denotes Trip13
T5113 956-963 NNS denotes mutants
T5114 949-955 JJ denotes single
T5115 964-965 -LRB- denotes (
T5116 972-974 NN denotes 3G
T5117 965-971 NN denotes Figure
T5118 974-975 -RRB- denotes )
T5119 975-976 . denotes .
T5120 976-1316 sentence denotes In contrast to the complete synapsis in Trip13Gt/Gt pachytene spermatocytes (Figure 5A), in which SPO11 is available in leptonema to initiate (via DSB induction, Figure S2A and S2B) a recombination-driven homolog search, chromosome synapsis in doubly mutant spermatocytes was highly disrupted as in Spo11 single mutants (Figure 5B and 5C).
T5121 977-979 IN denotes In
T5122 1260-1269 VBN denotes disrupted
T5123 980-988 NN denotes contrast
T5124 989-991 IN denotes to
T5125 992-995 DT denotes the
T5126 1005-1013 NN denotes synapsis
T5127 996-1004 JJ denotes complete
T5128 1014-1016 IN denotes in
T5129 1017-1025 NN denotes Trip13Gt
T5130 1026-1028 NN denotes Gt
T5131 1025-1026 HYPH denotes /
T5132 1029-1038 NN denotes pachytene
T5133 1039-1052 NNS denotes spermatocytes
T5134 1053-1054 -LRB- denotes (
T5135 1061-1063 NN denotes 5A
T5136 1054-1060 NN denotes Figure
T5137 1063-1064 -RRB- denotes )
T5138 1064-1066 , denotes ,
T5139 1066-1068 IN denotes in
T5140 1081-1083 VBZ denotes is
T5141 1069-1074 WDT denotes which
T5142 1075-1080 NN denotes SPO11
T5143 1084-1093 JJ denotes available
T5144 1094-1096 IN denotes in
T5145 1097-1106 NN denotes leptonema
T5146 1107-1109 TO denotes to
T5147 1110-1118 VB denotes initiate
T5148 1119-1120 -LRB- denotes (
T5149 1146-1149 NN denotes S2A
T5150 1120-1123 IN denotes via
T5151 1124-1127 NN denotes DSB
T5152 1128-1137 NN denotes induction
T5153 1137-1139 , denotes ,
T5154 1139-1145 NN denotes Figure
T5155 1150-1153 CC denotes and
T5156 1154-1157 NN denotes S2B
T5157 1157-1158 -RRB- denotes )
T5158 1159-1160 DT denotes a
T5159 1190-1196 NN denotes search
T5160 1161-1174 NN denotes recombination
T5161 1175-1181 VBN denotes driven
T5162 1174-1175 HYPH denotes -
T5163 1182-1189 NN denotes homolog
T5164 1196-1198 , denotes ,
T5165 1198-1208 NN denotes chromosome
T5166 1209-1217 NN denotes synapsis
T5167 1218-1220 IN denotes in
T5168 1221-1227 RB denotes doubly
T5169 1228-1234 JJ denotes mutant
T5170 1235-1248 NNS denotes spermatocytes
T5171 1249-1252 VBD denotes was
T5172 1253-1259 RB denotes highly
T5173 1270-1272 IN denotes as
T5174 1273-1275 IN denotes in
T5175 1276-1281 NN denotes Spo11
T5176 1289-1296 NNS denotes mutants
T5177 1282-1288 JJ denotes single
T5178 1297-1298 -LRB- denotes (
T5179 1305-1307 NN denotes 5B
T5180 1298-1304 NN denotes Figure
T5181 1308-1311 CC denotes and
T5182 1312-1314 NN denotes 5C
T5183 1314-1315 -RRB- denotes )
T5184 1315-1316 . denotes .
T5185 1316-1535 sentence denotes Identical studies were performed with mice deficient for Mei1, a vertebrate-specific gene also required for DSB formation and chromosome synapsis [37], with similar results (Figure 3J and 3K; immunocytology not shown).
T5186 1317-1326 JJ denotes Identical
T5187 1327-1334 NNS denotes studies
T5188 1340-1349 VBN denotes performed
T5189 1335-1339 VBD denotes were
T5190 1350-1354 IN denotes with
T5191 1355-1359 NNS denotes mice
T5192 1360-1369 JJ denotes deficient
T5198 1382-1392 NN denotes vertebrate
T5199 1393-1401 JJ denotes specific
T5200 1392-1393 HYPH denotes -
T5201 1407-1411 RB denotes also
T5202 1412-1420 VBN denotes required
T5203 1421-1424 IN denotes for
T5204 1425-1428 NN denotes DSB
T5205 1429-1438 NN denotes formation
T5206 1439-1442 CC denotes and
T5207 1443-1453 NN denotes chromosome
T5208 1454-1462 NN denotes synapsis
T5209 1463-1464 -LRB- denotes [
T5210 1464-1466 CD denotes 37
T5211 1466-1467 -RRB- denotes ]
T5212 1467-1469 , denotes ,
T5213 1469-1473 IN denotes with
T5193 1370-1373 IN denotes for
T5194 1374-1378 NN denotes Mei1
T5195 1378-1380 , denotes ,
T5196 1380-1381 DT denotes a
T5197 1402-1406 NN denotes gene
T5214 1474-1481 JJ denotes similar
T5215 1482-1489 NNS denotes results
T5216 1490-1491 -LRB- denotes (
T5217 1498-1500 NN denotes 3J
T5218 1491-1497 NN denotes Figure
T5219 1501-1504 CC denotes and
T5220 1505-1507 NN denotes 3K
T5221 1507-1508 : denotes ;
T5222 1509-1523 NN denotes immunocytology
T5223 1528-1533 VBN denotes shown
T5224 1524-1527 RB denotes not
T5225 1533-1534 -RRB- denotes )
T5226 1534-1535 . denotes .
R3083 T4933 T4934 aux To,determine
R3084 T4934 T4935 advcl determine,analyzed
R3085 T4936 T4937 mark if,prevents
R3086 T4937 T4934 ccomp prevents,determine
R3087 T4938 T4939 compound TRIP13,deficiency
R3088 T4939 T4937 nsubj deficiency,prevents
R3089 T4940 T4937 dobj apoptosis,prevents
R3090 T4941 T4940 acl triggered,apoptosis
R3091 T4942 T4941 agent by,triggered
R3092 T4943 T4942 pobj asynapsis,by
R3093 T4944 T4941 prep as,triggered
R3094 T4945 T4944 prep in,as
R3095 T4946 T4947 compound C.,elegans
R3096 T4947 T4945 pobj elegans,in
R3097 T4948 T4935 punct ", ",analyzed
R3098 T4949 T4935 nsubj we,analyzed
R3099 T4950 T4935 dobj mice,analyzed
R3100 T4951 T4952 dep that,were
R3101 T4952 T4950 relcl were,mice
R3102 T4953 T4954 advmod doubly,mutant
R3103 T4954 T4952 acomp mutant,were
R3104 T4955 T4954 prep for,mutant
R3105 T4956 T4955 pobj Spo11,for
R3106 T4957 T4956 cc and,Spo11
R3107 T4958 T4956 conj Trip13,Spo11
R3108 T4959 T4935 punct .,analyzed
R3109 T4961 T4962 nsubj SPO11,is
R3110 T4963 T4964 det a,transesterase
R3111 T4964 T4962 attr transesterase,is
R3112 T4965 T4966 dep that,is
R3113 T4966 T4964 relcl is,transesterase
R3114 T4967 T4966 acomp essential,is
R3115 T4968 T4967 prep for,essential
R3116 T4969 T4970 det the,creation
R3117 T4970 T4968 pobj creation,for
R3118 T4971 T4970 prep of,creation
R3119 T4972 T4973 advmod genetically,programmed
R3120 T4973 T4974 amod programmed,DSB
R3121 T4974 T4971 pobj DSB,of
R3122 T4975 T4970 prep during,creation
R3123 T4976 T4975 pobj leptonema,during
R3124 T4977 T4976 prep of,leptonema
R3125 T4978 T4979 amod many,organisms
R3126 T4979 T4977 pobj organisms,of
R3127 T4980 T4979 punct ", ",organisms
R3128 T4981 T4979 prep including,organisms
R3129 T4982 T4981 pobj mice,including
R3130 T4983 T4984 punct [,18
R3131 T4984 T4966 parataxis 18,is
R3132 T4985 T4984 punct ],18
R3133 T4986 T4962 punct .,is
R3134 T4988 T4989 prep In,have
R3135 T4990 T4991 compound C.,elegans
R3136 T4991 T4988 pobj elegans,In
R3137 T4992 T4989 punct ", ",have
R3138 T4993 T4994 nmod spo,gametes
R3139 T4994 T4989 nsubj gametes,have
R3140 T4995 T4993 punct -,spo
R3141 T4996 T4993 nummod 11,spo
R3142 T4997 T4994 compound mutant,gametes
R3143 T4998 T4999 amod extensive,asynapsis
R3144 T4999 T4989 dobj asynapsis,have
R3145 T5000 T4999 punct ", ",asynapsis
R3146 T5001 T5002 dep which,triggers
R3147 T5002 T4999 relcl triggers,asynapsis
R3148 T5003 T5004 npadvmod PCH,dependent
R3149 T5004 T5007 amod dependent,apoptosis
R3150 T5005 T5003 punct -,PCH
R3151 T5006 T5003 nummod 2,PCH
R3152 T5007 T5002 dobj apoptosis,triggers
R3153 T5008 T5007 prep in,apoptosis
R3154 T5009 T5008 pobj pachynema,in
R3155 T5010 T5011 punct [,2
R3156 T5011 T4989 parataxis 2,have
R3157 T5012 T5011 punct ],2
R3158 T5013 T4989 punct .,have
R3159 T5015 T5016 prep In,are
R3160 T5017 T5015 pobj mice,In
R3161 T5018 T5016 punct ", ",are
R3162 T5019 T5020 nmod Spo11,spermatocytes
R3163 T5020 T5016 nsubj spermatocytes,are
R3164 T5021 T5019 punct −,Spo11
R3165 T5022 T5019 punct /,Spo11
R3166 T5023 T5019 punct −,Spo11
R3167 T5024 T5025 advmod severely,defective
R3168 T5025 T5016 acomp defective,are
R3169 T5026 T5016 prep in,are
R3170 T5027 T5028 amod homologous,synapsis
R3171 T5028 T5026 pobj synapsis,in
R3172 T5029 T5028 compound chromosome,synapsis
R3173 T5030 T5031 punct [,35
R3174 T5031 T5016 parataxis 35,are
R3175 T5032 T5031 nummod 34,35
R3176 T5033 T5031 punct ",",35
R3177 T5034 T5031 punct ],35
R3178 T5035 T5016 punct ", ",are
R3179 T5036 T5016 cc and,are
R3180 T5037 T5016 conj arrest,are
R3181 T5038 T5037 prep with,arrest
R3182 T5039 T5038 pobj chromosomes,with
R3183 T5040 T5037 prep in,arrest
R3184 T5041 T5042 det a,state
R3185 T5042 T5040 pobj state,in
R3186 T5043 T5042 amod characteristic,state
R3187 T5044 T5043 prep of,characteristic
R3188 T5045 T5046 det the,transition
R3189 T5046 T5044 pobj transition,of
R3190 T5047 T5048 compound zygotene,pachytene
R3191 T5048 T5046 compound pachytene,transition
R3192 T5049 T5048 punct /,pachytene
R3193 T5050 T5051 punct (,3H
R3194 T5051 T5037 parataxis 3H,arrest
R3195 T5052 T5051 compound Figure,3H
R3196 T5053 T5051 punct ),3H
R3197 T5054 T5016 punct .,are
R3198 T5056 T5057 nsubj Spermatocytes,progressed
R3199 T5058 T5056 prep in,Spermatocytes
R3200 T5059 T5060 nmod Trip13Gt,Gt
R3201 T5060 T5062 nmod Gt,testes
R3202 T5061 T5060 punct /,Gt
R3203 T5062 T5058 pobj testes,in
R3204 T5063 T5062 nmod Spo11,testes
R3205 T5064 T5063 punct −,Spo11
R3206 T5065 T5063 punct /,Spo11
R3207 T5066 T5063 punct −,Spo11
R3208 T5067 T5057 advmod maximally,progressed
R3209 T5068 T5057 prep to,progressed
R3210 T5069 T5070 det that,point
R3211 T5070 T5068 pobj point,to
R3212 T5071 T5057 prep before,progressed
R3213 T5072 T5071 pcomp undergoing,before
R3214 T5073 T5072 dobj death,undergoing
R3215 T5074 T5075 punct (,3I
R3216 T5075 T5072 parataxis 3I,undergoing
R3217 T5076 T5075 compound Figs,3I
R3218 T5077 T5075 punct ),3I
R3219 T5078 T5072 punct ", ",undergoing
R3220 T5079 T5080 advmod well,before
R3221 T5080 T5072 prep before,undergoing
R3222 T5081 T5082 det the,checkpoint
R3223 T5082 T5080 pobj checkpoint,before
R3224 T5083 T5082 compound spindle,checkpoint
R3225 T5084 T5085 dep that,eliminates
R3226 T5085 T5082 relcl eliminates,checkpoint
R3227 T5086 T5087 compound achiasmate,spermatocytes
R3228 T5087 T5085 dobj spermatocytes,eliminates
R3229 T5088 T5089 punct [,36
R3230 T5089 T5057 parataxis 36,progressed
R3231 T5090 T5089 punct ],36
R3232 T5091 T5057 punct .,progressed
R3233 T5093 T5094 expl There,was
R3234 T5095 T5096 det no,evidence
R3235 T5096 T5094 attr evidence,was
R3236 T5097 T5096 prep of,evidence
R3237 T5098 T5099 nmod metaphase,spermatocytes
R3238 T5099 T5097 pobj spermatocytes,of
R3239 T5100 T5098 nummod I,metaphase
R3240 T5101 T5099 cc or,spermatocytes
R3241 T5102 T5103 amod postmeiotic,spermatids
R3242 T5103 T5099 conj spermatids,spermatocytes
R3243 T5104 T5096 prep in,evidence
R3244 T5105 T5106 det these,testes
R3245 T5106 T5104 pobj testes,in
R3246 T5107 T5094 punct ", ",was
R3247 T5108 T5094 prep unlike,was
R3248 T5109 T5108 pobj those,unlike
R3249 T5110 T5109 acl seen,those
R3250 T5111 T5110 prep in,seen
R3251 T5112 T5113 nmod Trip13,mutants
R3252 T5113 T5111 pobj mutants,in
R3253 T5114 T5113 amod single,mutants
R3254 T5115 T5116 punct (,3G
R3255 T5116 T5094 parataxis 3G,was
R3256 T5117 T5116 compound Figure,3G
R3257 T5118 T5116 punct ),3G
R3258 T5119 T5094 punct .,was
R3259 T5121 T5122 prep In,disrupted
R3260 T5123 T5121 pobj contrast,In
R3261 T5124 T5123 prep to,contrast
R3262 T5125 T5126 det the,synapsis
R3263 T5126 T5124 pobj synapsis,to
R3264 T5127 T5126 amod complete,synapsis
R3265 T5128 T5126 prep in,synapsis
R3266 T5129 T5130 compound Trip13Gt,Gt
R3267 T5130 T5132 compound Gt,pachytene
R3268 T5131 T5130 punct /,Gt
R3269 T5132 T5133 compound pachytene,spermatocytes
R3270 T5133 T5128 pobj spermatocytes,in
R3271 T5134 T5135 punct (,5A
R3272 T5135 T5126 parataxis 5A,synapsis
R3273 T5136 T5135 compound Figure,5A
R3274 T5137 T5135 punct ),5A
R3275 T5138 T5126 punct ", ",synapsis
R3276 T5139 T5140 prep in,is
R3277 T5140 T5126 relcl is,synapsis
R3278 T5141 T5139 pobj which,in
R3279 T5142 T5140 nsubj SPO11,is
R3280 T5143 T5140 acomp available,is
R3281 T5144 T5140 prep in,is
R3282 T5145 T5144 pobj leptonema,in
R3283 T5146 T5147 aux to,initiate
R3284 T5147 T5140 advcl initiate,is
R3285 T5148 T5149 punct (,S2A
R3286 T5149 T5147 parataxis S2A,initiate
R3287 T5150 T5149 prep via,S2A
R3288 T5151 T5152 compound DSB,induction
R3289 T5152 T5150 pobj induction,via
R3290 T5153 T5149 punct ", ",S2A
R3291 T5154 T5149 compound Figure,S2A
R3292 T5155 T5149 cc and,S2A
R3293 T5156 T5149 conj S2B,S2A
R3294 T5157 T5149 punct ),S2A
R3295 T5158 T5159 det a,search
R3296 T5159 T5147 dobj search,initiate
R3297 T5160 T5161 npadvmod recombination,driven
R3298 T5161 T5159 amod driven,search
R3299 T5162 T5161 punct -,driven
R3300 T5163 T5159 compound homolog,search
R3301 T5164 T5122 punct ", ",disrupted
R3302 T5165 T5166 compound chromosome,synapsis
R3303 T5166 T5122 nsubjpass synapsis,disrupted
R3304 T5167 T5166 prep in,synapsis
R3305 T5168 T5169 advmod doubly,mutant
R3306 T5169 T5170 amod mutant,spermatocytes
R3307 T5170 T5167 pobj spermatocytes,in
R3308 T5171 T5122 auxpass was,disrupted
R3309 T5172 T5122 advmod highly,disrupted
R3310 T5173 T5122 prep as,disrupted
R3311 T5174 T5173 prep in,as
R3312 T5175 T5176 nmod Spo11,mutants
R3313 T5176 T5174 pobj mutants,in
R3314 T5177 T5176 amod single,mutants
R3315 T5178 T5179 punct (,5B
R3317 T5180 T5179 compound Figure,5B
R3346 T5211 T5210 punct ],37
R3347 T5212 T5188 punct ", ",performed
R3348 T5213 T5188 prep with,performed
R3349 T5214 T5215 amod similar,results
R3350 T5215 T5213 pobj results,with
R3351 T5216 T5217 punct (,3J
R3352 T5217 T5188 parataxis 3J,performed
R3353 T5218 T5217 compound Figure,3J
R3354 T5219 T5217 cc and,3J
R3355 T5220 T5217 conj 3K,3J
R3356 T5221 T5217 punct ;,3J
R3357 T5222 T5223 nsubj immunocytology,shown
R3358 T5223 T5217 ccomp shown,3J
R3359 T5224 T5223 neg not,shown
R3360 T5225 T5217 punct ),3J
R3361 T5226 T5188 punct .,performed
R3316 T5179 T5122 parataxis 5B,disrupted
R3318 T5181 T5179 cc and,5B
R3319 T5182 T5179 conj 5C,5B
R3320 T5183 T5179 punct ),5B
R3321 T5184 T5122 punct .,disrupted
R3322 T5186 T5187 amod Identical,studies
R3323 T5187 T5188 nsubjpass studies,performed
R3324 T5189 T5188 auxpass were,performed
R3325 T5190 T5188 prep with,performed
R3326 T5191 T5190 pobj mice,with
R3327 T5192 T5191 amod deficient,mice
R3328 T5193 T5192 prep for,deficient
R3329 T5194 T5193 pobj Mei1,for
R3330 T5195 T5194 punct ", ",Mei1
R3331 T5196 T5197 det a,gene
R3332 T5197 T5194 appos gene,Mei1
R3333 T5198 T5199 npadvmod vertebrate,specific
R3334 T5199 T5197 amod specific,gene
R3335 T5200 T5199 punct -,specific
R3336 T5201 T5202 advmod also,required
R3337 T5202 T5197 acl required,gene
R3338 T5203 T5202 prep for,required
R3339 T5204 T5205 compound DSB,formation
R3340 T5205 T5203 pobj formation,for
R3341 T5206 T5205 cc and,formation
R3342 T5207 T5208 compound chromosome,synapsis
R3343 T5208 T5205 conj synapsis,formation
R3344 T5209 T5210 punct [,37
R3345 T5210 T5188 parataxis 37,performed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4581 16-22 PR:000016672 denotes TRIP13
T4582 43-52 GO:0006915 denotes apoptosis
T4583 67-75 GO:0007129 denotes synapsis
T4584 82-92 NCBITaxon:6239 denotes C. elegans
T4585 106-110 NCBITaxon:10088 denotes mice
T4586 139-144 PR:000015553 denotes Spo11
T4587 149-155 PR:000016672 denotes Trip13
T4588 157-162 PR:000015553 denotes SPO11
T4589 220-231 SO:0000704 denotes genetically
T4590 254-263 GO:0000237 denotes leptonema
T4591 272-281 NCBITaxon:1 denotes organisms
T4592 293-297 NCBITaxon:10088 denotes mice
T4593 307-317 NCBITaxon:6239 denotes C. elegans
T4594 319-325 PR:Q22236 denotes spo-11
T4595 333-340 CL:0000300 denotes gametes
T4596 357-365 GO:0007129 denotes synapsis
T4597 382-387 PR:P38126 denotes PCH-2
T4598 398-407 GO:0006915 denotes apoptosis
T4599 411-420 GO:0000239 denotes pachynema
T4600 429-433 NCBITaxon:10088 denotes mice
T4601 435-440 PR:000015553 denotes Spo11
T4602 445-458 CL:0000017 denotes spermatocytes
T4603 485-515 GO:0007129 denotes homologous chromosome synapsis
T4604 586-594 GO:0000238 denotes zygotene
T4605 595-604 GO:0000239 denotes pachytene
T4606 629-642 CL:0000017 denotes Spermatocytes
T4607 646-652 PR:000016672 denotes Trip13
T4608 658-663 PR:000015553 denotes Spo11
T4609 668-674 UBERON:0000473 denotes testes
T4610 728-733 GO:0016265 denotes death
T4611 761-768 GO:0005819 denotes spindle
T4612 761-779 GO:0031577 denotes spindle checkpoint
T4613 797-806 GO:0005712 denotes chiasmate
T4614 807-820 CL:0000017 denotes spermatocytes
T4615 852-863 GO:0007132 denotes metaphase I
T4616 864-877 CL:0000017 denotes spermatocytes
T4617 885-892 GO:0007126 denotes meiotic
T4618 893-903 CL:0000018 denotes spermatids
T4619 913-919 UBERON:0000473 denotes testes
T4620 942-948 PR:000016672 denotes Trip13
T4621 1005-1013 GO:0007129 denotes synapsis
T4622 1017-1023 PR:000016672 denotes Trip13
T4623 1029-1038 GO:0000239 denotes pachytene
T4624 1039-1052 CL:0000017 denotes spermatocytes
T4625 1075-1080 PR:000015553 denotes SPO11
T4626 1097-1106 GO:0000237 denotes leptonema
T4627 1198-1217 GO:0007129 denotes chromosome synapsis
T4628 1235-1248 CL:0000017 denotes spermatocytes
T4629 1276-1281 PR:000015553 denotes Spo11
T4630 1355-1359 NCBITaxon:10088 denotes mice
T4631 1374-1378 PR:000031227 denotes Mei1
T4632 1382-1392 NCBITaxon:7742 denotes vertebrate
T4633 1402-1406 SO:0000704 denotes gene
T4634 1443-1462 GO:0007129 denotes chromosome synapsis

2_test

Id Subject Object Predicate Lexical cue
17696610-11242108-85497914 299-301 11242108 denotes 18
17696610-16339446-85497915 422-423 16339446 denotes 2
17696610-11106739-85497916 517-519 11106739 denotes 34
17696610-11106738-85497917 520-522 11106738 denotes 35
17696610-11686299-85497918 822-824 11686299 denotes 36
17696610-14668445-85497919 1464-1466 14668445 denotes 37
T61286 299-301 11242108 denotes 18
T89712 422-423 16339446 denotes 2
T45258 517-519 11106739 denotes 34
T41168 520-522 11106738 denotes 35
T50334 822-824 11686299 denotes 36
T60577 1464-1466 14668445 denotes 37

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4723 16-22 PR_EXT:000016672 denotes TRIP13
T4724 43-52 GO:0006915 denotes apoptosis
T4725 67-75 GO:0007129 denotes synapsis
T4726 82-92 NCBITaxon:6239 denotes C. elegans
T4727 106-110 NCBITaxon:10088 denotes mice
T4728 128-134 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T4729 139-144 PR_EXT:000015553 denotes Spo11
T4730 149-155 PR_EXT:000016672 denotes Trip13
T4731 157-162 PR_EXT:000015553 denotes SPO11
T4732 220-231 SO_EXT:0000704 denotes genetically
T4733 254-263 GO:0000237 denotes leptonema
T4734 272-281 NCBITaxon:1 denotes organisms
T4735 293-297 NCBITaxon:10088 denotes mice
T4736 307-317 NCBITaxon:6239 denotes C. elegans
T4737 319-325 PR_EXT:Q22236 denotes spo-11
T4738 326-332 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T4739 333-340 CL:0000300 denotes gametes
T4740 357-365 GO:0007129 denotes synapsis
T4741 382-387 PR_EXT:P38126 denotes PCH-2
T4742 398-407 GO:0006915 denotes apoptosis
T4743 411-420 GO:0000239 denotes pachynema
T4744 429-433 NCBITaxon:10088 denotes mice
T4745 435-440 PR_EXT:000015553 denotes Spo11
T4746 441-442 SO_EXT:sequence_nullness_or_absence denotes −
T4747 443-444 SO_EXT:sequence_nullness_or_absence denotes −
T4748 445-458 CL:0000017 denotes spermatocytes
T4749 485-515 GO:0007129 denotes homologous chromosome synapsis
T4750 496-506 GO_SO_EXT:chromosome denotes chromosome
T4751 541-552 GO_SO_EXT:chromosome denotes chromosomes
T4752 586-594 GO:0000238 denotes zygotene
T4753 595-604 GO:0000239 denotes pachytene
T4754 629-642 CL:0000017 denotes Spermatocytes
T4755 646-652 PR_EXT:000016672 denotes Trip13
T4756 658-663 PR_EXT:000015553 denotes Spo11
T4757 664-665 SO_EXT:sequence_nullness_or_absence denotes −
T4758 666-667 SO_EXT:sequence_nullness_or_absence denotes −
T4759 668-674 UBERON:0000473 denotes testes
T4760 728-733 GO:0016265 denotes death
T4761 761-768 GO:0005819 denotes spindle
T4762 761-779 GO:0031577 denotes spindle checkpoint
T4763 785-795 GO_EXT:killing denotes eliminates
T4764 797-806 GO:0005712 denotes chiasmate
T4765 807-820 CL:0000017 denotes spermatocytes
T4766 852-863 GO:0007132 denotes metaphase I
T4767 864-877 CL:0000017 denotes spermatocytes
T4768 885-892 GO:0007126 denotes meiotic
T4769 893-903 CL:0000018 denotes spermatids
T4770 913-919 UBERON:0000473 denotes testes
T4771 942-948 PR_EXT:000016672 denotes Trip13
T4772 956-963 SO_EXT:sequence_altered_entity denotes mutants
T4773 1005-1013 GO:0007129 denotes synapsis
T4774 1017-1023 PR_EXT:000016672 denotes Trip13
T4775 1029-1038 GO:0000239 denotes pachytene
T4776 1039-1052 CL:0000017 denotes spermatocytes
T4777 1075-1080 PR_EXT:000015553 denotes SPO11
T4778 1097-1106 GO:0000237 denotes leptonema
T4779 1161-1174 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T4780 1198-1208 GO_SO_EXT:chromosome denotes chromosome
T4781 1198-1217 GO:0007129 denotes chromosome synapsis
T4782 1228-1234 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T4783 1235-1248 CL:0000017 denotes spermatocytes
T4786 1355-1359 NCBITaxon:10088 denotes mice
T4784 1276-1281 PR_EXT:000015553 denotes Spo11
T4785 1289-1296 SO_EXT:sequence_altered_entity denotes mutants
T4787 1374-1378 PR_EXT:000031227 denotes Mei1
T4788 1382-1392 NCBITaxon:7742 denotes vertebrate
T4789 1402-1406 SO_EXT:0000704 denotes gene
T4790 1443-1453 GO_SO_EXT:chromosome denotes chromosome
T4791 1443-1462 GO:0007129 denotes chromosome synapsis