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PMC:1920263 / 14446-14703 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T4958 133-153 Protein denotes bovine serum albumin

UBERON-AE

Id Subject Object Predicate Lexical cue
T4963 140-145 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5671 0-3 IN denotes For
T5672 4-8 NNP denotes EMSA
T5673 8-9 , denotes ,
T5674 10-11 CD denotes 5
T5675 12-14 NN denotes µg
T5676 15-17 IN denotes of
T5677 18-25 JJ denotes nuclear
T5678 26-34 NNS denotes proteins
T5679 35-39 VBD denotes were
T5680 40-52 VBN denotes preincubated
T5681 53-55 IN denotes on
T5682 56-59 NN denotes ice
T5683 60-64 IN denotes with
T5684 65-66 CD denotes 2
T5685 67-69 NN denotes µg
T5686 70-72 IN denotes of
T5687 73-77 NN denotes poly
T5688 77-78 -LRB- denotes (
T5689 78-83 JJ denotes dI-dC
T5690 83-84 -RRB- denotes )
T5691 85-86 -LRB- denotes (
T5692 86-91 NNP denotes Roche
T5693 91-92 -RRB- denotes )
T5694 93-95 IN denotes as
T5695 96-98 DT denotes an
T5696 99-109 JJ denotes unspecific
T5697 110-120 NN denotes competitor
T5698 121-124 CC denotes and
T5699 125-126 CD denotes 1
T5700 127-129 NN denotes µg
T5701 130-132 IN denotes of
T5702 133-139 JJ denotes bovine
T5703 140-145 NN denotes serum
T5704 146-153 NN denotes albumin
T5705 154-156 IN denotes in
T5706 157-161 NN denotes band
T5707 162-167 NN denotes shift
T5708 168-174 NN denotes buffer
T5709 175-176 -LRB- denotes (
T5710 176-178 CD denotes 50
T5711 179-181 NNP denotes mM
T5712 182-186 NNP denotes Tris
T5713 186-187 , denotes ,
T5714 188-191 CD denotes 150
T5715 192-194 NNP denotes mM
T5716 195-198 NNP denotes KCl
T5717 198-199 , denotes ,
T5718 200-201 CD denotes 5
T5719 202-204 NNP denotes mM
T5720 205-209 NNP denotes EDTA
T5721 209-210 , denotes ,
T5722 211-214 CD denotes 2.5
T5723 215-217 NNP denotes mM
T5724 218-232 NN denotes dithiothreitol
T5725 232-233 , denotes ,
T5726 234-236 CD denotes 20
T5727 236-237 NN denotes %
T5728 238-244 NNP denotes Ficoll
T5729 244-245 -RRB- denotes )
T5730 246-249 IN denotes for
T5731 250-252 CD denotes 15
T5732 253-256 NN denotes min
T5733 256-257 . denotes .
R4736 T5671 T5680 prep For,preincubated
R4737 T5672 T5671 pobj EMSA,For
R4738 T5673 T5680 punct ",",preincubated
R4748 T5683 T5680 prep with,preincubated
R4761 T5696 T5697 amod unspecific,competitor
R4762 T5697 T5694 pobj competitor,as
R4763 T5698 T5697 cc and,competitor
R4764 T5699 T5700 nummod 1,µg
R4765 T5700 T5697 conj µg,competitor
R4766 T5701 T5700 prep of,µg
R4767 T5702 T5703 amod bovine,serum
R4768 T5703 T5701 pobj serum,of
R4769 T5704 T5700 conj albumin,µg
R4770 T5705 T5704 prep in,albumin
R4771 T5706 T5707 compound band,shift
R4772 T5707 T5708 compound shift,buffer
R4773 T5708 T5705 pobj buffer,in
R4774 T5709 T5712 punct (,Tris
R4775 T5710 T5712 nummod 50,Tris
R4776 T5711 T5712 compound mM,Tris
R4777 T5712 T5700 appos Tris,µg
R4778 T5713 T5712 punct ",",Tris
R4779 T5714 T5716 nummod 150,KCl
R4780 T5715 T5716 compound mM,KCl
R4781 T5716 T5712 appos KCl,Tris
R4782 T5717 T5716 punct ",",KCl
R4783 T5718 T5720 nummod 5,EDTA
R4784 T5719 T5720 compound mM,EDTA
R4785 T5720 T5716 appos EDTA,KCl
R4786 T5721 T5720 punct ",",EDTA
R4787 T5722 T5724 nummod 2.5,dithiothreitol
R4788 T5723 T5724 compound mM,dithiothreitol
R4789 T5724 T5720 appos dithiothreitol,EDTA
R4790 T5725 T5724 punct ",",dithiothreitol
R4791 T5726 T5727 nummod 20,%
R4792 T5727 T5728 compound %,Ficoll
R4793 T5728 T5724 appos Ficoll,dithiothreitol
R4794 T5729 T5724 punct ),dithiothreitol
R4795 T5730 T5720 prep for,EDTA
R4796 T5731 T5732 nummod 15,min
R4797 T5732 T5730 pobj min,for
R4798 T5733 T5680 punct .,preincubated
R4739 T5674 T5675 nummod 5,µg
R4740 T5675 T5680 nsubjpass µg,preincubated
R4741 T5676 T5675 prep of,µg
R4742 T5677 T5678 amod nuclear,proteins
R4743 T5678 T5676 pobj proteins,of
R4744 T5679 T5680 auxpass were,preincubated
R4745 T5680 T5680 ROOT preincubated,preincubated
R4746 T5681 T5680 prep on,preincubated
R4747 T5682 T5681 pobj ice,on
R4749 T5684 T5685 nummod 2,µg
R4750 T5685 T5683 pobj µg,with
R4751 T5686 T5685 prep of,µg
R4752 T5687 T5686 pobj poly,of
R4753 T5688 T5689 punct (,dI-dC
R4754 T5689 T5687 appos dI-dC,poly
R4755 T5690 T5680 punct ),preincubated
R4756 T5691 T5692 punct (,Roche
R4757 T5692 T5680 appos Roche,preincubated
R4758 T5693 T5692 punct ),Roche
R4759 T5694 T5680 prep as,preincubated
R4760 T5695 T5697 det an,competitor

sentences

Id Subject Object Predicate Lexical cue
T4981 0-257 Sentence denotes For EMSA, 5 µg of nuclear proteins were preincubated on ice with 2 µg of poly(dI-dC) (Roche) as an unspecific competitor and 1 µg of bovine serum albumin in band shift buffer (50 mM Tris, 150 mM KCl, 5 mM EDTA, 2.5 mM dithiothreitol, 20% Ficoll) for 15 min.
T94 0-257 Sentence denotes For EMSA, 5 µg of nuclear proteins were preincubated on ice with 2 µg of poly(dI-dC) (Roche) as an unspecific competitor and 1 µg of bovine serum albumin in band shift buffer (50 mM Tris, 150 mM KCl, 5 mM EDTA, 2.5 mM dithiothreitol, 20% Ficoll) for 15 min.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5215 0-3 IN denotes For
T5216 4-8 NN denotes EMSA
T5217 8-9 -COMMA- denotes ,
T5218 10-14 NN denotes 5 µg
T5219 15-17 IN denotes of
T5220 18-25 JJ denotes nuclear
T5221 26-34 NN denotes proteins
T5222 35-39 VB denotes were
T5223 40-52 VB denotes preincubated
T5224 53-55 IN denotes on
T5225 56-59 NN denotes ice
T5226 60-64 IN denotes with
T5227 65-69 NN denotes 2 µg
T5228 70-72 IN denotes of
T5229 73-77 NN denotes poly
T5230 77-78 -LRB- denotes (
T5231 78-83 NN denotes dI-dC
T5232 83-84 -RRB- denotes )
T5233 85-86 -LRB- denotes (
T5234 86-91 NNP denotes Roche
T5235 91-92 -RRB- denotes )
T5236 93-95 IN denotes as
T5237 96-98 DT denotes an
T5238 99-109 JJ denotes unspecific
T5239 110-120 NN denotes competitor
T5240 121-124 CC denotes and
T5241 125-129 NN denotes 1 µg
T5242 130-132 IN denotes of
T5243 133-139 JJ denotes bovine
T5244 140-145 NN denotes serum
T5245 146-153 NN denotes albumin
T5246 154-156 IN denotes in
T5247 157-161 NN denotes band
T5248 162-167 NN denotes shift
T5249 168-174 NN denotes buffer
T5250 175-176 -LRB- denotes (
T5251 176-181 NNP denotes 50 mM
T5252 182-186 NNP denotes Tris
T5253 186-187 -COMMA- denotes ,
T5254 188-194 NN denotes 150 mM
T5255 195-198 NNP denotes KCl
T5256 198-199 -COMMA- denotes ,
T5257 200-204 NN denotes 5 mM
T5258 205-209 NN denotes EDTA
T5259 209-210 -COMMA- denotes ,
T5260 211-217 NN denotes 2.5 mM
T5261 218-232 NN denotes dithiothreitol
T5262 232-233 -COMMA- denotes ,
T5263 234-236 CD denotes 20
T5264 236-237 NN denotes %
T5265 238-244 NN denotes Ficoll
T5266 244-245 -RRB- denotes )
T5267 246-249 IN denotes for
T5268 250-256 NN denotes 15 min
R4295 T5216 T5215 arg2Of EMSA,For
R4296 T5218 T5219 arg1Of 5 µg,of
R4297 T5218 T5222 arg1Of 5 µg,were
R4298 T5218 T5223 arg2Of 5 µg,preincubated
R4299 T5221 T5219 arg2Of proteins,of
R4300 T5221 T5220 arg1Of proteins,nuclear
R4301 T5223 T5215 arg1Of preincubated,For
R4302 T5223 T5217 arg1Of preincubated,","
R4303 T5223 T5222 arg2Of preincubated,were
R4304 T5223 T5224 arg1Of preincubated,on
R4305 T5225 T5224 arg2Of ice,on
R4306 T5225 T5226 arg1Of ice,with
R4307 T5227 T5226 arg2Of 2 µg,with
R4308 T5227 T5228 arg1Of 2 µg,of
R4309 T5229 T5230 arg1Of poly,(
R4310 T5229 T5233 arg1Of poly,(
R4311 T5229 T5236 arg1Of poly,as
R4312 T5229 T5240 arg1Of poly,and
R4313 T5231 T5230 arg2Of dI-dC,(
R4314 T5232 T5230 arg3Of ),(
R4315 T5234 T5233 arg2Of Roche,(
R4316 T5235 T5233 arg3Of ),(
R4317 T5239 T5236 arg2Of competitor,as
R4318 T5239 T5237 arg1Of competitor,an
R4319 T5239 T5238 arg1Of competitor,unspecific
R4320 T5240 T5228 arg2Of and,of
R4321 T5240 T5267 arg1Of and,for
R4322 T5241 T5240 arg2Of 1 µg,and
R4323 T5241 T5242 arg1Of 1 µg,of
R4324 T5241 T5246 arg1Of 1 µg,in
R4325 T5241 T5250 arg1Of 1 µg,(
R4326 T5245 T5242 arg2Of albumin,of
R4327 T5245 T5243 arg1Of albumin,bovine
R4328 T5245 T5244 arg1Of albumin,serum
R4329 T5249 T5246 arg2Of buffer,in
R4330 T5249 T5247 arg1Of buffer,band
R4331 T5249 T5248 arg1Of buffer,shift
R4332 T5252 T5251 arg1Of Tris,50 mM
R4333 T5252 T5253 arg1Of Tris,","
R4334 T5253 T5256 arg1Of ",",","
R4335 T5255 T5253 arg2Of KCl,","
R4336 T5255 T5254 arg1Of KCl,150 mM
R4337 T5256 T5259 arg1Of ",",","
R4338 T5258 T5256 arg2Of EDTA,","
R4339 T5258 T5257 arg1Of EDTA,5 mM
R4340 T5259 T5262 arg1Of ",",","
R4341 T5261 T5259 arg2Of dithiothreitol,","
R4342 T5261 T5260 arg1Of dithiothreitol,2.5 mM
R4343 T5262 T5250 arg2Of ",",(
R4344 T5263 T5264 arg1Of 20,%
R4345 T5265 T5262 arg2Of Ficoll,","
R4346 T5265 T5263 arg1Of Ficoll,20
R4347 T5266 T5250 arg3Of ),(
R4348 T5268 T5267 arg2Of 15 min,for

events-check-again

Id Subject Object Predicate Lexical cue
T5907 133-153 Protein denotes bovine serum albumin

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5919 133-153 Protein denotes bovine serum albumin

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4968 133-153 Protein denotes bovine serum albumin