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PMC:1914394 / 52255-52986 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T27309 473-479 IN denotes during
T27310 480-492 NN denotes neurogenesis
T27226 0-5 NN denotes E2f3a
T27227 12-19 VB denotes disrupt
T27228 6-11 MD denotes could
T27229 20-23 NN denotes SAC
T27230 24-39 NN denotes differentiation
T27231 40-47 IN denotes through
T27232 48-51 PRP$ denotes its
T27233 63-67 NN denotes role
T27234 52-56 RB denotes well
T27235 57-62 VBN denotes known
T27236 68-70 IN denotes as
T27237 71-72 DT denotes a
T27238 89-98 NN denotes activator
T27239 73-88 JJ denotes transcriptional
T27240 98-100 , denotes ,
T27241 100-102 CC denotes or
T27242 102-104 , denotes ,
T27243 104-106 IN denotes in
T27244 173-179 VB denotes affect
T27245 107-111 NN denotes view
T27246 112-114 IN denotes of
T27247 115-118 DT denotes the
T27248 119-128 NN denotes discovery
T27249 129-133 IN denotes that
T27250 137-139 VBZ denotes is
T27251 134-136 PRP denotes it
T27252 140-149 RB denotes partially
T27253 150-161 JJ denotes cytoplasmic
T27254 161-163 , denotes ,
T27255 163-168 NN denotes E2f3a
T27256 169-172 MD denotes may
T27257 180-189 NNS denotes processes
T27258 190-195 JJ denotes other
T27259 196-200 IN denotes than
T27260 201-205 NN denotes gene
T27261 206-216 NN denotes regulation
T27262 216-217 . denotes .
T27263 217-407 sentence denotes Both scenarios are feasible since E2fs regulate differentiation genes [44–48], and cell cycle regulators, such as Cdkn1b, have cytoplasmic activities that influence differentiation [68,69].
T27264 218-222 DT denotes Both
T27265 223-232 NNS denotes scenarios
T27266 233-236 VBP denotes are
T27267 237-245 JJ denotes feasible
T27268 246-251 IN denotes since
T27269 257-265 VBP denotes regulate
T27270 252-256 NNS denotes E2fs
T27271 266-281 NN denotes differentiation
T27272 282-287 NNS denotes genes
T27273 288-289 -LRB- denotes [
T27274 289-291 CD denotes 44
T27275 291-292 SYM denotes –
T27276 292-294 CD denotes 48
T27277 294-295 -RRB- denotes ]
T27278 295-297 , denotes ,
T27279 297-300 CC denotes and
T27280 301-305 NN denotes cell
T27281 306-311 NN denotes cycle
T27282 312-322 NNS denotes regulators
T27283 340-344 VBP denotes have
T27284 322-324 , denotes ,
T27285 324-328 JJ denotes such
T27286 329-331 IN denotes as
T27287 332-338 NN denotes Cdkn1b
T27288 338-340 , denotes ,
T27289 345-356 JJ denotes cytoplasmic
T27290 357-367 NNS denotes activities
T27291 368-372 WDT denotes that
T27292 373-382 VBP denotes influence
T27293 383-398 NN denotes differentiation
T27294 399-400 -LRB- denotes [
T27295 403-405 CD denotes 69
T27296 400-402 CD denotes 68
T27297 402-403 , denotes ,
T27298 405-406 -RRB- denotes ]
T27299 406-407 . denotes .
T27300 407-529 sentence denotes Many transcription factors shuttle between nucleus and cytoplasm during neurogenesis (e.g., [70] and references therein).
T27301 408-412 JJ denotes Many
T27302 427-434 NNS denotes factors
T27303 413-426 NN denotes transcription
T27304 435-442 VBP denotes shuttle
T27305 443-450 IN denotes between
T27306 451-458 NN denotes nucleus
T27307 459-462 CC denotes and
T27308 463-472 NN denotes cytoplasm
T27311 493-494 -LRB- denotes (
T27312 501-503 CD denotes 70
T27313 494-498 FW denotes e.g.
T27314 498-500 , denotes ,
T27315 500-501 -LRB- denotes [
T27316 503-504 -RRB- denotes ]
T27317 505-508 CC denotes and
T27318 509-519 NNS denotes references
T27319 520-527 RB denotes therein
T27320 527-528 -RRB- denotes )
T27321 528-529 . denotes .
T27322 529-731 sentence denotes It may be difficult to identify E2f3a-specific target genes or cytoplasmic proteins in SACs since these neurons are a small proportion (<1%) of the total retina and only ~5.2% of amacrine neurons [38].
T27323 530-532 PRP denotes It
T27324 537-539 VB denotes be
T27325 533-536 MD denotes may
T27326 540-549 JJ denotes difficult
T27327 550-552 TO denotes to
T27328 553-561 VB denotes identify
T27329 562-567 NN denotes E2f3a
T27330 568-576 JJ denotes specific
T27331 567-568 HYPH denotes -
T27332 584-589 NNS denotes genes
T27333 577-583 NN denotes target
T27334 590-592 CC denotes or
T27335 593-604 JJ denotes cytoplasmic
T27336 605-613 NN denotes proteins
T27337 614-616 IN denotes in
T27338 617-621 NNS denotes SACs
T27339 622-627 IN denotes since
T27340 642-645 VBP denotes are
T27341 628-633 DT denotes these
T27342 634-641 NNS denotes neurons
T27343 646-647 DT denotes a
T27344 654-664 NN denotes proportion
T27345 648-653 JJ denotes small
T27346 665-666 -LRB- denotes (
T27347 666-667 SYM denotes <
T27348 667-668 CD denotes 1
T27349 668-669 NN denotes %
T27350 669-670 -RRB- denotes )
T27351 671-673 IN denotes of
T27352 674-677 DT denotes the
T27353 684-690 NN denotes retina
T27354 678-683 JJ denotes total
T27355 691-694 CC denotes and
T27356 695-699 RB denotes only
T27357 701-704 CD denotes 5.2
T27358 700-701 SYM denotes ~
T27359 704-705 NN denotes %
T27360 706-708 IN denotes of
T27361 709-717 JJ denotes amacrine
T27362 718-725 NNS denotes neurons
T27363 726-727 -LRB- denotes [
T27364 727-729 CD denotes 38
T27365 729-730 -RRB- denotes ]
T27366 730-731 . denotes .
R8116 T27226 T27227 nsubj E2f3a,disrupt
R8117 T27228 T27227 aux could,disrupt
R8118 T27229 T27230 compound SAC,differentiation
R8119 T27230 T27227 dobj differentiation,disrupt
R8120 T27231 T27227 prep through,disrupt
R8121 T27232 T27233 poss its,role
R8122 T27233 T27231 pobj role,through
R8123 T27234 T27235 advmod well,known
R8124 T27235 T27233 amod known,role
R8125 T27236 T27233 prep as,role
R8126 T27237 T27238 det a,activator
R8127 T27238 T27236 pobj activator,as
R8128 T27239 T27238 amod transcriptional,activator
R8129 T27240 T27227 punct ", ",disrupt
R8130 T27241 T27227 cc or,disrupt
R8131 T27242 T27227 punct ", ",disrupt
R8132 T27243 T27244 prep in,affect
R8133 T27244 T27227 conj affect,disrupt
R8134 T27245 T27243 pobj view,in
R8135 T27246 T27245 prep of,view
R8136 T27247 T27248 det the,discovery
R8137 T27248 T27246 pobj discovery,of
R8138 T27249 T27250 mark that,is
R8139 T27250 T27248 acl is,discovery
R8140 T27251 T27250 nsubj it,is
R8141 T27252 T27253 advmod partially,cytoplasmic
R8142 T27253 T27250 acomp cytoplasmic,is
R8143 T27254 T27244 punct ", ",affect
R8144 T27255 T27244 nsubj E2f3a,affect
R8145 T27256 T27244 aux may,affect
R8146 T27257 T27244 dobj processes,affect
R8147 T27258 T27257 amod other,processes
R8148 T27259 T27258 prep than,other
R8149 T27260 T27261 compound gene,regulation
R8150 T27261 T27259 pobj regulation,than
R8151 T27262 T27244 punct .,affect
R8152 T27264 T27265 det Both,scenarios
R8153 T27265 T27266 nsubj scenarios,are
R8154 T27267 T27266 acomp feasible,are
R8155 T27268 T27269 mark since,regulate
R8156 T27269 T27266 advcl regulate,are
R8157 T27270 T27269 nsubj E2fs,regulate
R8158 T27271 T27272 compound differentiation,genes
R8159 T27272 T27269 dobj genes,regulate
R8160 T27273 T27274 punct [,44
R8161 T27274 T27266 parataxis 44,are
R8162 T27275 T27276 punct –,48
R8163 T27276 T27274 prep 48,44
R8164 T27277 T27274 punct ],44
R8165 T27278 T27266 punct ", ",are
R8166 T27279 T27266 cc and,are
R8167 T27280 T27281 compound cell,cycle
R8168 T27281 T27282 compound cycle,regulators
R8169 T27282 T27283 nsubj regulators,have
R8170 T27283 T27266 conj have,are
R8171 T27284 T27282 punct ", ",regulators
R8172 T27285 T27286 amod such,as
R8173 T27286 T27282 prep as,regulators
R8174 T27287 T27286 pobj Cdkn1b,as
R8175 T27288 T27283 punct ", ",have
R8176 T27289 T27290 amod cytoplasmic,activities
R8177 T27290 T27283 dobj activities,have
R8178 T27291 T27292 dep that,influence
R8179 T27292 T27290 relcl influence,activities
R8180 T27293 T27292 dobj differentiation,influence
R8181 T27294 T27295 punct [,69
R8182 T27295 T27283 parataxis 69,have
R8183 T27296 T27295 nummod 68,69
R8184 T27297 T27295 punct ",",69
R8185 T27298 T27295 punct ],69
R8186 T27299 T27283 punct .,have
R8187 T27301 T27302 amod Many,factors
R8188 T27302 T27304 nsubj factors,shuttle
R8189 T27303 T27302 compound transcription,factors
R8190 T27305 T27304 prep between,shuttle
R8191 T27306 T27305 pobj nucleus,between
R8192 T27307 T27306 cc and,nucleus
R8193 T27308 T27306 conj cytoplasm,nucleus
R8194 T27309 T27304 prep during,shuttle
R8195 T27310 T27309 pobj neurogenesis,during
R8196 T27311 T27312 punct (,70
R8197 T27312 T27304 parataxis 70,shuttle
R8198 T27313 T27312 advmod e.g.,70
R8199 T27314 T27312 punct ", ",70
R8200 T27315 T27312 punct [,70
R8201 T27316 T27312 punct ],70
R8202 T27317 T27312 cc and,70
R8203 T27318 T27312 conj references,70
R8204 T27319 T27318 advmod therein,references
R8205 T27320 T27312 punct ),70
R8206 T27321 T27304 punct .,shuttle
R8207 T27323 T27324 nsubj It,be
R8208 T27325 T27324 aux may,be
R8209 T27326 T27324 acomp difficult,be
R8210 T27327 T27328 aux to,identify
R8211 T27328 T27324 xcomp identify,be
R8212 T27329 T27330 npadvmod E2f3a,specific
R8213 T27330 T27332 amod specific,genes
R8214 T27331 T27330 punct -,specific
R8215 T27332 T27328 dobj genes,identify
R8216 T27333 T27332 compound target,genes
R8217 T27334 T27332 cc or,genes
R8218 T27335 T27336 amod cytoplasmic,proteins
R8219 T27336 T27332 conj proteins,genes
R8220 T27337 T27328 prep in,identify
R8221 T27338 T27337 pobj SACs,in
R8222 T27339 T27340 mark since,are
R8223 T27340 T27324 advcl are,be
R8224 T27341 T27342 det these,neurons
R8225 T27342 T27340 nsubj neurons,are
R8226 T27343 T27344 det a,proportion
R8227 T27344 T27340 attr proportion,are
R8228 T27345 T27344 amod small,proportion
R8229 T27346 T27344 punct (,proportion
R8230 T27347 T27348 punct <,1
R8231 T27348 T27349 nummod 1,%
R8232 T27349 T27344 appos %,proportion
R8233 T27350 T27344 punct ),proportion
R8234 T27351 T27344 prep of,proportion
R8235 T27352 T27353 det the,retina
R8236 T27353 T27351 pobj retina,of
R8237 T27354 T27353 amod total,retina
R8238 T27355 T27344 cc and,proportion
R8239 T27356 T27357 advmod only,5.2
R8240 T27357 T27359 nummod 5.2,%
R8241 T27358 T27357 punct ~,5.2
R8242 T27359 T27344 conj %,proportion
R8243 T27360 T27359 prep of,%
R8244 T27361 T27362 amod amacrine,neurons
R8245 T27362 T27360 pobj neurons,of
R8246 T27363 T27364 punct [,38
R8247 T27364 T27340 parataxis 38,are
R8248 T27365 T27364 punct ],38
R8249 T27366 T27324 punct .,be

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27188 0-5 PR_EXT:000028775 denotes E2f3a
T27189 24-39 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T27190 73-88 GO_EXT:transcription denotes transcriptional
T27191 150-161 GO:0005737 denotes cytoplasmic
T27192 163-168 PR_EXT:000028775 denotes E2f3a
T27193 201-205 SO_EXT:0000704 denotes gene
T27194 206-216 GO:0065007 denotes regulation
T27195 252-256 PR_EXT:E2F denotes E2fs
T27196 257-265 GO:0065007 denotes regulate
T27197 266-281 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T27198 282-287 SO_EXT:0000704 denotes genes
T27199 301-305 CL_GO_EXT:cell denotes cell
T27200 301-311 GO:0007049 denotes cell cycle
T27201 312-322 GO_EXT:regulator denotes regulators
T27202 332-338 PR_EXT:000003090 denotes Cdkn1b
T27203 345-356 GO:0005737 denotes cytoplasmic
T27204 383-398 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T27205 413-426 GO_EXT:transcription denotes transcription
T27206 413-434 GO_EXT:transcription_factor denotes transcription factors
T27207 435-442 GO_EXT:biological_movement_or_translocation_process denotes shuttle
T27208 451-458 GO:0005634 denotes nucleus
T27209 463-472 GO:0005737 denotes cytoplasm
T27210 480-492 GO:0022008 denotes neurogenesis
T27211 562-567 PR_EXT:000028775 denotes E2f3a
T27212 584-589 SO_EXT:0000704 denotes genes
T27213 593-604 GO:0005737 denotes cytoplasmic
T27214 605-613 CHEBI_PR_EXT:protein denotes proteins
T27215 634-641 CL:0000540 denotes neurons
T27216 684-690 UBERON:0000966 denotes retina
T27217 709-725 CL:0000561 denotes amacrine neurons

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27179 480-492 GO:0022008 denotes neurogenesis
T27180 562-567 PR:000028775 denotes E2f3a
T27181 584-589 SO:0000704 denotes genes
T27182 593-604 GO:0005737 denotes cytoplasmic
T27183 634-641 CL:0000540 denotes neurons
T27184 684-690 UBERON:0000966 denotes retina
T27185 709-725 CL:0000561 denotes amacrine neurons
T27167 0-5 PR:000028775 denotes E2f3a
T27168 150-161 GO:0005737 denotes cytoplasmic
T27169 163-168 PR:000028775 denotes E2f3a
T27170 201-205 SO:0000704 denotes gene
T27171 206-216 GO:0065007 denotes regulation
T27172 257-265 GO:0065007 denotes regulate
T27173 282-287 SO:0000704 denotes genes
T27174 301-311 GO:0007049 denotes cell cycle
T27175 332-338 PR:000003090 denotes Cdkn1b
T27176 345-356 GO:0005737 denotes cytoplasmic
T27177 451-458 GO:0005634 denotes nucleus
T27178 463-472 GO:0005737 denotes cytoplasm

2_test

Id Subject Object Predicate Lexical cue
17608565-11159908-84869034 289-291 11159908 denotes 44
17608565-12110166-84869034 289-291 12110166 denotes 44
17608565-12975318-84869034 289-291 12975318 denotes 44
17608565-15479636-84869034 289-291 15479636 denotes 44
17608565-16081278-84869034 289-291 16081278 denotes 44
17608565-16705040-84869035 400-402 16705040 denotes 68
17608565-15078817-84869036 403-405 15078817 denotes 69
17608565-17043310-84869037 501-503 17043310 denotes 70
17608565-9786999-84869038 727-729 9786999 denotes 38
T68946 289-291 11159908 denotes 44
T3612 289-291 12110166 denotes 44
T53323 289-291 12975318 denotes 44
T58579 289-291 15479636 denotes 44
T65898 289-291 16081278 denotes 44
T53939 400-402 16705040 denotes 68
T93030 403-405 15078817 denotes 69
T27591 501-503 17043310 denotes 70
T75934 727-729 9786999 denotes 38