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PMC:1914394 / 20525-21181 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T11212 0-9 NNS denotes Responses
T11213 74-80 VBP denotes assess
T11214 10-12 IN denotes to
T11215 13-16 JJ denotes dim
T11216 17-22 NN denotes light
T11217 23-25 IN denotes in
T11218 26-30 NN denotes dark
T11219 31-38 VBN denotes adapted
T11220 30-31 HYPH denotes -
T11221 50-60 NNS denotes conditions
T11222 39-40 -LRB- denotes (
T11223 40-48 JJ denotes scotopic
T11224 48-49 -RRB- denotes )
T11225 61-73 RB denotes specifically
T11226 81-84 DT denotes the
T11227 89-95 NN denotes system
T11228 85-88 NN denotes rod
T11229 95-97 , denotes ,
T11230 97-100 CC denotes and
T11231 101-105 VBD denotes were
T11232 106-115 JJ denotes defective
T11233 116-118 IN denotes in
T11234 119-122 DT denotes the
T11235 129-135 NN denotes retina
T11236 123-125 NN denotes Rb
T11237 126-128 NN denotes KO
T11238 136-137 -LRB- denotes (
T11239 144-146 NN denotes 2E
T11240 137-143 NN denotes Figure
T11241 146-147 -RRB- denotes )
T11242 147-148 . denotes .
T11243 148-252 sentence denotes The substantial reduction of both a- and b-waves is consistent with rod and bipolar cell apoptosis [2].
T11244 149-152 DT denotes The
T11245 165-174 NN denotes reduction
T11246 153-164 JJ denotes substantial
T11247 198-200 VBZ denotes is
T11248 175-177 IN denotes of
T11249 178-182 CC denotes both
T11250 183-184 NN denotes a
T11251 192-197 NNS denotes waves
T11252 184-185 HYPH denotes -
T11253 186-189 CC denotes and
T11254 190-191 NN denotes b
T11255 191-192 HYPH denotes -
T11256 201-211 JJ denotes consistent
T11257 212-216 IN denotes with
T11258 217-220 NN denotes rod
T11259 238-247 NN denotes apoptosis
T11260 221-224 CC denotes and
T11261 225-232 JJ denotes bipolar
T11262 233-237 NN denotes cell
T11263 248-249 -LRB- denotes [
T11264 249-250 CD denotes 2
T11265 250-251 -RRB- denotes ]
T11266 251-252 . denotes .
T11267 252-379 sentence denotes The sensitivity of the residual response appeared unchanged, suggesting it arose from the Cre-negative portions of the retina.
T11268 253-256 DT denotes The
T11269 257-268 NN denotes sensitivity
T11270 294-302 VBD denotes appeared
T11271 269-271 IN denotes of
T11272 272-275 DT denotes the
T11273 285-293 NN denotes response
T11274 276-284 JJ denotes residual
T11275 303-312 JJ denotes unchanged
T11276 312-314 , denotes ,
T11277 314-324 VBG denotes suggesting
T11278 325-327 PRP denotes it
T11279 328-333 VBD denotes arose
T11280 334-338 IN denotes from
T11281 339-342 DT denotes the
T11282 356-364 NNS denotes portions
T11283 343-346 NN denotes Cre
T11284 347-355 JJ denotes negative
T11285 346-347 HYPH denotes -
T11286 365-367 IN denotes of
T11287 368-371 DT denotes the
T11288 372-378 NN denotes retina
T11289 378-379 . denotes .
T11290 379-574 sentence denotes Responses were about the same in the WT and E2f1 KO retina, and, most importantly, also the Rb/E2f1 DKO response median lay at the lower end of the normal range for most intensities (Figure 2F).
T11291 380-389 NNS denotes Responses
T11292 390-394 VBD denotes were
T11293 395-400 RB denotes about
T11294 405-409 JJ denotes same
T11295 401-404 DT denotes the
T11296 410-412 IN denotes in
T11297 413-416 DT denotes the
T11298 432-438 NN denotes retina
T11299 417-419 NN denotes WT
T11300 420-423 CC denotes and
T11301 424-428 NN denotes E2f1
T11302 429-431 NN denotes KO
T11303 438-440 , denotes ,
T11304 440-443 CC denotes and
T11305 443-445 , denotes ,
T11306 445-449 RBS denotes most
T11307 450-461 RB denotes importantly
T11308 500-503 VBD denotes lay
T11309 461-463 , denotes ,
T11310 463-467 RB denotes also
T11311 468-471 DT denotes the
T11312 484-492 NN denotes response
T11313 472-474 NN denotes Rb
T11314 475-479 NN denotes E2f1
T11315 474-475 HYPH denotes /
T11316 480-483 NN denotes DKO
T11317 493-499 JJ denotes median
T11318 504-506 IN denotes at
T11319 507-510 DT denotes the
T11320 517-520 NN denotes end
T11321 511-516 JJ denotes lower
T11322 521-523 IN denotes of
T11323 524-527 DT denotes the
T11324 535-540 NN denotes range
T11325 528-534 JJ denotes normal
T11326 541-544 IN denotes for
T11327 545-549 JJS denotes most
T11328 550-561 NNS denotes intensities
T11329 562-563 -LRB- denotes (
T11330 570-572 NN denotes 2F
T11331 563-569 NN denotes Figure
T11332 572-573 -RRB- denotes )
T11333 573-574 . denotes .
T11334 574-656 sentence denotes Thus, E2f1 deletion almost completely rescued the rod system in the Rb KO retina.
T11335 575-579 RB denotes Thus
T11336 613-620 VBD denotes rescued
T11337 579-581 , denotes ,
T11338 581-585 NN denotes E2f1
T11339 586-594 NN denotes deletion
T11340 595-601 RB denotes almost
T11341 602-612 RB denotes completely
T11342 621-624 DT denotes the
T11343 629-635 NN denotes system
T11344 625-628 NN denotes rod
T11345 636-638 IN denotes in
T11346 639-642 DT denotes the
T11347 649-655 NN denotes retina
T11348 643-645 NN denotes Rb
T11349 646-648 NN denotes KO
T11350 655-656 . denotes .
R3108 T11212 T11213 nsubj Responses,assess
R3109 T11214 T11212 prep to,Responses
R3110 T11215 T11216 amod dim,light
R3111 T11216 T11214 pobj light,to
R3112 T11217 T11212 prep in,Responses
R3113 T11218 T11219 npadvmod dark,adapted
R3114 T11219 T11221 amod adapted,conditions
R3115 T11220 T11219 punct -,adapted
R3116 T11221 T11217 pobj conditions,in
R3117 T11222 T11223 punct (,scotopic
R3118 T11223 T11219 parataxis scotopic,adapted
R3119 T11224 T11223 punct ),scotopic
R3120 T11225 T11213 advmod specifically,assess
R3121 T11226 T11227 det the,system
R3122 T11227 T11213 dobj system,assess
R3123 T11228 T11227 compound rod,system
R3124 T11229 T11213 punct ", ",assess
R3125 T11230 T11213 cc and,assess
R3126 T11231 T11213 conj were,assess
R3127 T11232 T11231 acomp defective,were
R3128 T11233 T11231 prep in,were
R3129 T11234 T11235 det the,retina
R3130 T11235 T11233 pobj retina,in
R3131 T11236 T11237 compound Rb,KO
R3132 T11237 T11235 compound KO,retina
R3133 T11238 T11239 punct (,2E
R3134 T11239 T11231 parataxis 2E,were
R3135 T11240 T11239 compound Figure,2E
R3136 T11241 T11239 punct ),2E
R3137 T11242 T11213 punct .,assess
R3138 T11244 T11245 det The,reduction
R3139 T11245 T11247 nsubj reduction,is
R3140 T11246 T11245 amod substantial,reduction
R3141 T11248 T11245 prep of,reduction
R3142 T11249 T11250 preconj both,a
R3143 T11250 T11251 nmod a,waves
R3144 T11251 T11248 pobj waves,of
R3145 T11252 T11250 punct -,a
R3146 T11253 T11250 cc and,a
R3147 T11254 T11250 conj b,a
R3148 T11255 T11251 punct -,waves
R3149 T11256 T11247 acomp consistent,is
R3150 T11257 T11256 prep with,consistent
R3151 T11258 T11259 nmod rod,apoptosis
R3152 T11259 T11257 pobj apoptosis,with
R3153 T11260 T11258 cc and,rod
R3154 T11261 T11262 amod bipolar,cell
R3155 T11262 T11258 conj cell,rod
R3156 T11263 T11264 punct [,2
R3157 T11264 T11247 parataxis 2,is
R3158 T11265 T11264 punct ],2
R3159 T11266 T11247 punct .,is
R3160 T11268 T11269 det The,sensitivity
R3161 T11269 T11270 nsubj sensitivity,appeared
R3162 T11271 T11269 prep of,sensitivity
R3163 T11272 T11273 det the,response
R3164 T11273 T11271 pobj response,of
R3165 T11274 T11273 amod residual,response
R3166 T11275 T11270 oprd unchanged,appeared
R3167 T11276 T11270 punct ", ",appeared
R3168 T11277 T11270 advcl suggesting,appeared
R3169 T11278 T11279 nsubj it,arose
R3170 T11279 T11277 advcl arose,suggesting
R3171 T11280 T11279 prep from,arose
R3172 T11281 T11282 det the,portions
R3173 T11282 T11280 pobj portions,from
R3174 T11283 T11284 npadvmod Cre,negative
R3175 T11284 T11282 amod negative,portions
R3176 T11285 T11284 punct -,negative
R3177 T11286 T11282 prep of,portions
R3178 T11287 T11288 det the,retina
R3179 T11288 T11286 pobj retina,of
R3180 T11289 T11270 punct .,appeared
R3181 T11291 T11292 nsubj Responses,were
R3182 T11293 T11294 advmod about,same
R3183 T11294 T11292 attr same,were
R3184 T11295 T11294 det the,same
R3185 T11296 T11292 prep in,were
R3186 T11297 T11298 det the,retina
R3187 T11298 T11296 pobj retina,in
R3188 T11299 T11298 nmod WT,retina
R3189 T11300 T11299 cc and,WT
R3190 T11301 T11302 compound E2f1,KO
R3191 T11302 T11299 conj KO,WT
R3192 T11303 T11292 punct ", ",were
R3193 T11304 T11292 cc and,were
R3194 T11305 T11292 punct ", ",were
R3195 T11306 T11307 advmod most,importantly
R3196 T11307 T11308 advmod importantly,lay
R3197 T11308 T11292 conj lay,were
R3198 T11309 T11308 punct ", ",lay
R3199 T11310 T11308 advmod also,lay
R3200 T11311 T11312 det the,response
R3201 T11312 T11308 nsubj response,lay
R3202 T11313 T11314 compound Rb,E2f1
R3203 T11314 T11316 compound E2f1,DKO
R3204 T11315 T11314 punct /,E2f1
R3205 T11316 T11312 compound DKO,response
R3206 T11317 T11312 amod median,response
R3207 T11318 T11308 prep at,lay
R3208 T11319 T11320 det the,end
R3209 T11320 T11318 pobj end,at
R3210 T11321 T11320 amod lower,end
R3211 T11322 T11320 prep of,end
R3212 T11323 T11324 det the,range
R3213 T11324 T11322 pobj range,of
R3214 T11325 T11324 amod normal,range
R3215 T11326 T11308 prep for,lay
R3216 T11327 T11328 amod most,intensities
R3217 T11328 T11326 pobj intensities,for
R3218 T11329 T11330 punct (,2F
R3219 T11330 T11308 parataxis 2F,lay
R3220 T11331 T11330 compound Figure,2F
R3221 T11332 T11330 punct ),2F
R3222 T11333 T11308 punct .,lay
R3223 T11335 T11336 advmod Thus,rescued
R3224 T11337 T11336 punct ", ",rescued
R3225 T11338 T11339 compound E2f1,deletion
R3226 T11339 T11336 nsubj deletion,rescued
R3227 T11340 T11341 advmod almost,completely
R3228 T11341 T11336 advmod completely,rescued
R3229 T11342 T11343 det the,system
R3230 T11343 T11336 dobj system,rescued
R3231 T11344 T11343 compound rod,system
R3232 T11345 T11336 prep in,rescued
R3233 T11346 T11347 det the,retina
R3234 T11347 T11345 pobj retina,in
R3235 T11348 T11349 compound Rb,KO
R3236 T11349 T11347 compound KO,retina
R3237 T11350 T11336 punct .,rescued

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10944 0-9 GO_EXT:reaction_or_response denotes Responses
T10945 26-38 GO:1990603 denotes dark-adapted
T10946 40-48 GO:1990603 denotes scotopic
T10947 85-88 CL:0000604 denotes rod
T10948 123-125 PR_EXT:000013773 denotes Rb
T10949 129-135 UBERON:0000966 denotes retina
T10950 217-220 _FRAGMENT denotes rod
T10951 233-237 CL:0000604 denotes cell
T10952 238-247 GO:0097473 denotes apoptosis
T10953 225-237 CL:0000103 denotes bipolar cell
T10954 233-237 CL_GO_EXT:cell denotes cell
T10955 233-247 GO:0006915 denotes cell apoptosis
T10956 285-293 GO_EXT:reaction_or_response denotes response
T10957 372-378 UBERON:0000966 denotes retina
T10958 380-389 GO_EXT:reaction_or_response denotes Responses
T10959 417-419 SO_EXT:wild_type_entity_or_quality denotes WT
T10960 424-428 PR_EXT:000006852 denotes E2f1
T10961 432-438 UBERON:0000966 denotes retina
T10962 472-474 PR_EXT:000013773 denotes Rb
T10963 475-479 PR_EXT:000006852 denotes E2f1
T10964 484-492 GO_EXT:reaction_or_response denotes response
T10965 581-585 PR_EXT:000006852 denotes E2f1
T10966 586-594 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T10967 613-620 SO_EXT:sequence_rescue_process denotes rescued
T10968 625-628 CL:0000604 denotes rod
T10969 643-645 PR_EXT:000013773 denotes Rb
T10970 649-655 UBERON:0000966 denotes retina
R2935 T10951 T10950 _lexicallyChainedTo cell,rod
R2936 T10952 T10950 _lexicallyChainedTo apoptosis,rod

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10835 26-38 GO:1990603 denotes dark-adapted
T10836 40-48 GO:1990603 denotes scotopic
T10837 85-88 CL:0000604 denotes rod
T10838 123-125 PR:000013773 denotes Rb
T10839 129-135 UBERON:0000966 denotes retina
T10840 217-220 _FRAGMENT denotes rod
T10841 233-237 CL:0000604 denotes cell
T10842 238-247 GO:0097473 denotes apoptosis
T10843 225-237 CL:0000103 denotes bipolar cell
T10844 233-247 GO:0006915 denotes cell apoptosis
T10845 372-378 UBERON:0000966 denotes retina
T10846 424-428 PR:000006852 denotes E2f1
T10847 432-438 UBERON:0000966 denotes retina
T10848 472-474 PR:000013773 denotes Rb
T10849 475-479 PR:000006852 denotes E2f1
T10850 581-585 PR:000006852 denotes E2f1
T10851 625-628 CL:0000604 denotes rod
T10852 643-645 PR:000013773 denotes Rb
T10853 649-655 UBERON:0000966 denotes retina
R2931 T10841 T10840 _lexicallyChainedTo cell,rod
R2932 T10842 T10840 _lexicallyChainedTo apoptosis,rod

2_test

Id Subject Object Predicate Lexical cue
17608565-15193257-84868980 249-250 15193257 denotes 2
T23743 249-250 15193257 denotes 2