PMC:1858683 / 42766-43428
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20776 | 617-618 | SYM | denotes | = |
T20775 | 615-616 | NN | denotes | n |
T20774 | 619-620 | CD | denotes | 8 |
T20773 | 614-615 | -LRB- | denotes | ( |
T20772 | 612-613 | SYM | denotes | - |
T20771 | 611-612 | HYPH | denotes | / |
T20770 | 610-611 | SYM | denotes | + |
T20769 | 605-610 | NN | denotes | Pygo2 |
T20768 | 603-604 | : | denotes | ; |
T20767 | 601-602 | SYM | denotes | - |
T20766 | 600-601 | HYPH | denotes | / |
T20765 | 599-600 | SYM | denotes | - |
T20764 | 594-599 | NN | denotes | Pygo1 |
T20763 | 592-594 | , | denotes | , |
T20762 | 591-592 | -RRB- | denotes | ) |
T20761 | 588-589 | SYM | denotes | = |
T20760 | 586-587 | NN | denotes | n |
T20759 | 590-591 | CD | denotes | 6 |
T20758 | 585-586 | -LRB- | denotes | ( |
T20757 | 583-584 | SYM | denotes | + |
T20756 | 582-583 | HYPH | denotes | / |
T20755 | 581-582 | SYM | denotes | + |
T20754 | 576-581 | NN | denotes | Pygo2 |
T20753 | 574-575 | : | denotes | ; |
T20752 | 572-573 | SYM | denotes | - |
T20751 | 571-572 | HYPH | denotes | / |
T20750 | 570-571 | SYM | denotes | + |
T20749 | 565-570 | NN | denotes | Pygo1 |
T20748 | 563-565 | , | denotes | , |
T20747 | 562-563 | -RRB- | denotes | ) |
T20746 | 559-560 | SYM | denotes | = |
T20745 | 557-558 | NN | denotes | n |
T20744 | 561-562 | CD | denotes | 5 |
T20743 | 556-557 | -LRB- | denotes | ( |
T20742 | 541-555 | JJ | denotes | non-transgenic |
T20741 | 655-661 | NNS | denotes | groups |
T20740 | 537-540 | DT | denotes | the |
T20739 | 530-536 | IN | denotes | except |
T20738 | 528-529 | CD | denotes | 4 |
T20737 | 525-527 | IN | denotes | of |
T20736 | 513-519 | NN | denotes | sample |
T20735 | 520-524 | NN | denotes | size |
T20734 | 511-512 | DT | denotes | a |
T20733 | 508-510 | IN | denotes | by |
T20732 | 492-495 | VBD | denotes | was |
T20731 | 496-507 | VBN | denotes | represented |
T20730 | 483-491 | NN | denotes | genotype |
T20729 | 478-482 | DT | denotes | Each |
T20728 | 477-662 | sentence | denotes | Each genotype was represented by a sample size of 4 except the non-transgenic (n = 5), Pygo1+/- ; Pygo2+/+ (n = 6), Pygo1-/- ; Pygo2+/- (n = 8), and Pygo1-/- ; Pygo2-/- (n = 6) groups. |
T20727 | 476-477 | . | denotes | . |
T20726 | 469-476 | NN | denotes | protein |
T20725 | 463-468 | JJ | denotes | total |
T20724 | 460-462 | IN | denotes | to |
T20723 | 450-459 | VBG | denotes | according |
T20722 | 438-449 | VBG | denotes | normalizing |
T20721 | 436-438 | , | denotes | , |
T20720 | 435-436 | -RRB- | denotes | ) |
T20719 | 433-435 | NNP | denotes | IN |
T20718 | 431-433 | , | denotes | , |
T20717 | 419-431 | NNP | denotes | Indianapolis |
T20716 | 417-419 | , | denotes | , |
T20715 | 412-417 | NNP | denotes | Roche |
T20714 | 411-412 | -LRB- | denotes | ( |
T20713 | 405-406 | -RRB- | denotes | ) |
T20712 | 394-405 | NN | denotes | immunoassay |
T20711 | 386-387 | HYPH | denotes | - |
T20710 | 387-393 | VBN | denotes | linked |
T20709 | 380-386 | NN | denotes | Enzyme |
T20708 | 379-380 | -LRB- | denotes | ( |
T20707 | 373-378 | NNP | denotes | ELISA |
T20706 | 368-369 | HYPH | denotes | - |
T20705 | 369-372 | NN | denotes | Gal |
T20704 | 367-368 | NN | denotes | β |
T20703 | 407-410 | NN | denotes | kit |
T20702 | 365-366 | DT | denotes | a |
T20701 | 359-364 | VBG | denotes | using |
T20700 | 342-346 | VBD | denotes | were |
T20699 | 331-341 | NN | denotes | expression |
T20698 | 326-327 | HYPH | denotes | - |
T20697 | 325-326 | NN | denotes | β |
T20696 | 327-330 | NN | denotes | Gal |
T20695 | 315-324 | NN | denotes | transgene |
T20694 | 312-314 | IN | denotes | in |
T20693 | 347-358 | VBN | denotes | quantitated |
T20692 | 304-311 | NNS | denotes | Changes |
T20691 | 303-477 | sentence | denotes | Changes in transgene β-Gal expression were quantitated using a β-Gal ELISA (Enzyme-linked immunoassay) kit (Roche, Indianapolis, IN), normalizing according to total protein. |
T20690 | 302-303 | . | denotes | . |
T20689 | 299-302 | CD | denotes | 8.0 |
T20688 | 296-298 | IN | denotes | to |
T20687 | 278-286 | NN | denotes | staining |
T20686 | 273-274 | HYPH | denotes | - |
T20685 | 274-277 | NN | denotes | gal |
T20684 | 272-273 | NN | denotes | X |
T20683 | 287-295 | NN | denotes | solution |
T20682 | 268-271 | DT | denotes | the |
T20681 | 265-267 | IN | denotes | of |
T20680 | 262-264 | NN | denotes | pH |
T20679 | 251-261 | VBG | denotes | increasing |
T20678 | 248-250 | IN | denotes | by |
T20677 | 230-240 | VBG | denotes | developing |
T20676 | 241-247 | NN | denotes | kidney |
T20675 | 226-229 | DT | denotes | the |
T20674 | 219-225 | IN | denotes | within |
T20673 | 195-196 | HYPH | denotes | - |
T20672 | 196-209 | NN | denotes | galactosidase |
T20671 | 194-195 | NN | denotes | β |
T20670 | 210-218 | NN | denotes | activity |
T20669 | 183-193 | JJ | denotes | endogenous |
T20668 | 176-182 | VB | denotes | reduce |
T20667 | 173-175 | TO | denotes | to |
T20666 | 163-166 | VBD | denotes | was |
T20665 | 167-172 | VBN | denotes | taken |
T20664 | 158-162 | NN | denotes | Care |
T20663 | 157-303 | sentence | denotes | Care was taken to reduce endogenous β-galactosidase activity within the developing kidney by increasing pH of the X-gal staining solution to 8.0. |
T20662 | 156-157 | . | denotes | . |
T20661 | 155-156 | -RRB- | denotes | ] |
T20660 | 153-155 | CD | denotes | 21 |
T20659 | 152-153 | -LRB- | denotes | [ |
T20658 | 131-141 | RB | denotes | previously |
T20657 | 142-151 | VBN | denotes | described |
T20656 | 128-130 | IN | denotes | as |
T20655 | 114-117 | VBD | denotes | was |
T20654 | 106-113 | NNS | denotes | kidneys |
T20653 | 95-105 | VBG | denotes | developing |
T20652 | 91-94 | CC | denotes | and |
T20651 | 83-90 | NNS | denotes | embryos |
T20650 | 78-82 | CC | denotes | both |
T20649 | 75-77 | IN | denotes | of |
T20648 | 118-127 | VBN | denotes | performed |
T20647 | 66-74 | NN | denotes | staining |
T20646 | 61-62 | HYPH | denotes | - |
T20645 | 62-65 | NN | denotes | gal |
T20644 | 60-61 | NN | denotes | X |
T20643 | 59-157 | sentence | denotes | X-gal staining of both embryos and developing kidneys was performed as previously described [21]. |
T20642 | 46-49 | NN | denotes | Wnt |
T20641 | 50-59 | NN | denotes | signaling |
T20640 | 36-45 | JJ | denotes | canonical |
T20639 | 33-35 | IN | denotes | of |
T20638 | 27-32 | NN | denotes | assay |
T20637 | 18-26 | NN | denotes | reporter |
T20636 | 8-17 | NN | denotes | transgene |
T20635 | 3-4 | HYPH | denotes | - |
T20634 | 4-7 | NN | denotes | gal |
T20633 | 0-3 | NN | denotes | BAT |
T20785 | 638-643 | NN | denotes | Pygo2 |
T20784 | 636-637 | : | denotes | ; |
T20783 | 634-635 | SYM | denotes | - |
T20782 | 633-634 | HYPH | denotes | / |
T20794 | 661-662 | . | denotes | . |
T20793 | 653-654 | -RRB- | denotes | ) |
T20792 | 650-651 | SYM | denotes | = |
T20791 | 648-649 | NN | denotes | n |
T20790 | 652-653 | CD | denotes | 6 |
T20789 | 647-648 | -LRB- | denotes | ( |
T20788 | 645-646 | SYM | denotes | - |
T20787 | 644-645 | HYPH | denotes | / |
T20786 | 643-644 | SYM | denotes | - |
T20781 | 632-633 | SYM | denotes | - |
T20780 | 627-632 | NN | denotes | Pygo1 |
T20779 | 623-626 | CC | denotes | and |
T20778 | 621-623 | , | denotes | , |
T20777 | 620-621 | -RRB- | denotes | ) |
R5826 | T20633 | T20634 | compound | BAT,gal |
R5827 | T20634 | T20636 | compound | gal,transgene |
R5828 | T20635 | T20634 | punct | -,gal |
R5829 | T20636 | T20637 | compound | transgene,reporter |
R5830 | T20637 | T20638 | compound | reporter,assay |
R5831 | T20639 | T20638 | prep | of,assay |
R5832 | T20640 | T20641 | amod | canonical,signaling |
R5833 | T20641 | T20639 | pobj | signaling,of |
R5834 | T20642 | T20641 | compound | Wnt,signaling |
R5835 | T20644 | T20645 | compound | X,gal |
R5836 | T20645 | T20647 | compound | gal,staining |
R5837 | T20646 | T20645 | punct | -,gal |
R5838 | T20647 | T20648 | nsubjpass | staining,performed |
R5839 | T20649 | T20647 | prep | of,staining |
R5840 | T20650 | T20651 | preconj | both,embryos |
R5841 | T20651 | T20649 | pobj | embryos,of |
R5842 | T20652 | T20651 | cc | and,embryos |
R5843 | T20653 | T20654 | amod | developing,kidneys |
R5844 | T20654 | T20651 | conj | kidneys,embryos |
R5845 | T20655 | T20648 | auxpass | was,performed |
R5846 | T20656 | T20657 | mark | as,described |
R5847 | T20657 | T20648 | advcl | described,performed |
R5848 | T20658 | T20657 | advmod | previously,described |
R5849 | T20659 | T20660 | punct | [,21 |
R5850 | T20660 | T20657 | parataxis | 21,described |
R5851 | T20661 | T20660 | punct | ],21 |
R5852 | T20662 | T20648 | punct | .,performed |
R5853 | T20664 | T20665 | nsubjpass | Care,taken |
R5854 | T20666 | T20665 | auxpass | was,taken |
R5855 | T20667 | T20668 | aux | to,reduce |
R5856 | T20668 | T20665 | advcl | reduce,taken |
R5857 | T20669 | T20670 | amod | endogenous,activity |
R5858 | T20670 | T20668 | dobj | activity,reduce |
R5859 | T20671 | T20672 | compound | β,galactosidase |
R5860 | T20672 | T20670 | compound | galactosidase,activity |
R5861 | T20673 | T20672 | punct | -,galactosidase |
R5862 | T20674 | T20668 | prep | within,reduce |
R5863 | T20675 | T20676 | det | the,kidney |
R5864 | T20676 | T20674 | pobj | kidney,within |
R5865 | T20677 | T20676 | amod | developing,kidney |
R5866 | T20678 | T20668 | prep | by,reduce |
R5867 | T20679 | T20678 | pcomp | increasing,by |
R5868 | T20680 | T20679 | dobj | pH,increasing |
R5869 | T20681 | T20680 | prep | of,pH |
R5870 | T20682 | T20683 | det | the,solution |
R5871 | T20683 | T20681 | pobj | solution,of |
R5872 | T20684 | T20685 | compound | X,gal |
R5873 | T20685 | T20687 | compound | gal,staining |
R5874 | T20686 | T20685 | punct | -,gal |
R5875 | T20687 | T20683 | compound | staining,solution |
R5876 | T20688 | T20679 | prep | to,increasing |
R5877 | T20689 | T20688 | pobj | 8.0,to |
R5878 | T20690 | T20665 | punct | .,taken |
R5879 | T20692 | T20693 | nsubjpass | Changes,quantitated |
R5880 | T20694 | T20692 | prep | in,Changes |
R5881 | T20695 | T20696 | compound | transgene,Gal |
R5882 | T20696 | T20699 | compound | Gal,expression |
R5883 | T20697 | T20696 | compound | β,Gal |
R5884 | T20698 | T20696 | punct | -,Gal |
R5885 | T20699 | T20694 | pobj | expression,in |
R5886 | T20700 | T20693 | auxpass | were,quantitated |
R5887 | T20701 | T20693 | advcl | using,quantitated |
R5888 | T20702 | T20703 | det | a,kit |
R5889 | T20703 | T20701 | dobj | kit,using |
R5890 | T20704 | T20705 | nmod | β,Gal |
R5891 | T20705 | T20703 | nmod | Gal,kit |
R5892 | T20706 | T20705 | punct | -,Gal |
R5893 | T20707 | T20703 | nmod | ELISA,kit |
R5894 | T20708 | T20707 | punct | (,ELISA |
R5895 | T20709 | T20710 | npadvmod | Enzyme,linked |
R5896 | T20710 | T20712 | amod | linked,immunoassay |
R5897 | T20711 | T20710 | punct | -,linked |
R5898 | T20712 | T20707 | appos | immunoassay,ELISA |
R5899 | T20713 | T20703 | punct | ),kit |
R5900 | T20714 | T20715 | punct | (,Roche |
R5901 | T20715 | T20703 | parataxis | Roche,kit |
R5902 | T20716 | T20715 | punct | ", ",Roche |
R5903 | T20717 | T20715 | npadvmod | Indianapolis,Roche |
R5904 | T20718 | T20715 | punct | ", ",Roche |
R5905 | T20719 | T20715 | npadvmod | IN,Roche |
R5906 | T20720 | T20715 | punct | ),Roche |
R5907 | T20721 | T20693 | punct | ", ",quantitated |
R5908 | T20722 | T20693 | advcl | normalizing,quantitated |
R5909 | T20723 | T20722 | prep | according,normalizing |
R5910 | T20724 | T20723 | prep | to,according |
R5911 | T20725 | T20726 | amod | total,protein |
R5912 | T20726 | T20724 | pobj | protein,to |
R5913 | T20727 | T20693 | punct | .,quantitated |
R5914 | T20729 | T20730 | det | Each,genotype |
R5915 | T20730 | T20731 | nsubjpass | genotype,represented |
R5916 | T20732 | T20731 | auxpass | was,represented |
R5917 | T20733 | T20731 | agent | by,represented |
R5918 | T20734 | T20735 | det | a,size |
R5919 | T20735 | T20733 | pobj | size,by |
R5920 | T20736 | T20735 | compound | sample,size |
R5921 | T20737 | T20735 | prep | of,size |
R5922 | T20738 | T20737 | pobj | 4,of |
R5923 | T20739 | T20731 | prep | except,represented |
R5924 | T20740 | T20741 | det | the,groups |
R5925 | T20741 | T20739 | pobj | groups,except |
R5926 | T20742 | T20741 | amod | non-transgenic,groups |
R5927 | T20743 | T20744 | punct | (,5 |
R5928 | T20744 | T20742 | parataxis | 5,non-transgenic |
R5929 | T20745 | T20744 | nsubj | n,5 |
R5930 | T20746 | T20744 | punct | =,5 |
R5931 | T20747 | T20744 | punct | ),5 |
R5932 | T20748 | T20742 | punct | ", ",non-transgenic |
R5933 | T20749 | T20742 | conj | Pygo1,non-transgenic |
R5934 | T20750 | T20749 | punct | +,Pygo1 |
R5935 | T20751 | T20749 | punct | /,Pygo1 |
R5936 | T20752 | T20749 | punct | -,Pygo1 |
R5937 | T20753 | T20749 | punct | ;,Pygo1 |
R5938 | T20754 | T20749 | appos | Pygo2,Pygo1 |
R5939 | T20755 | T20754 | punct | +,Pygo2 |
R5940 | T20756 | T20754 | punct | /,Pygo2 |
R5941 | T20757 | T20754 | punct | +,Pygo2 |
R5942 | T20758 | T20759 | punct | (,6 |
R5943 | T20759 | T20749 | parataxis | 6,Pygo1 |
R5944 | T20760 | T20759 | nsubj | n,6 |
R5945 | T20761 | T20759 | punct | =,6 |
R5946 | T20762 | T20759 | punct | ),6 |
R5947 | T20763 | T20749 | punct | ", ",Pygo1 |
R5948 | T20764 | T20749 | conj | Pygo1,Pygo1 |
R5949 | T20765 | T20764 | punct | -,Pygo1 |
R5950 | T20766 | T20764 | punct | /,Pygo1 |
R5951 | T20767 | T20764 | punct | -,Pygo1 |
R5952 | T20768 | T20764 | punct | ;,Pygo1 |
R5953 | T20769 | T20764 | appos | Pygo2,Pygo1 |
R5954 | T20770 | T20769 | punct | +,Pygo2 |
R5955 | T20771 | T20769 | punct | /,Pygo2 |
R5956 | T20772 | T20769 | punct | -,Pygo2 |
R5957 | T20773 | T20774 | punct | (,8 |
R5958 | T20774 | T20764 | parataxis | 8,Pygo1 |
R5959 | T20775 | T20774 | nsubj | n,8 |
R5960 | T20776 | T20774 | punct | =,8 |
R5961 | T20777 | T20774 | punct | ),8 |
R5962 | T20778 | T20764 | punct | ", ",Pygo1 |
R5963 | T20779 | T20764 | cc | and,Pygo1 |
R5964 | T20780 | T20764 | conj | Pygo1,Pygo1 |
R5965 | T20781 | T20780 | punct | -,Pygo1 |
R5966 | T20782 | T20780 | punct | /,Pygo1 |
R5967 | T20783 | T20780 | punct | -,Pygo1 |
R5968 | T20784 | T20780 | punct | ;,Pygo1 |
R5969 | T20785 | T20780 | appos | Pygo2,Pygo1 |
R5970 | T20786 | T20785 | punct | -,Pygo2 |
R5971 | T20787 | T20785 | punct | /,Pygo2 |
R5972 | T20788 | T20785 | punct | -,Pygo2 |
R5973 | T20789 | T20790 | punct | (,6 |
R5974 | T20790 | T20780 | parataxis | 6,Pygo1 |
R5975 | T20791 | T20790 | nsubj | n,6 |
R5976 | T20792 | T20790 | punct | =,6 |
R5977 | T20793 | T20790 | punct | ),6 |
R5978 | T20794 | T20731 | punct | .,represented |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20632 | 645-646 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20631 | 643-644 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20630 | 638-643 | PR_EXT:000013524 | denotes | Pygo2 |
T20629 | 634-635 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20628 | 632-633 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20627 | 627-632 | PR_EXT:000013523 | denotes | Pygo1 |
T20626 | 612-613 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20625 | 610-611 | SO_EXT:normal_or_wild_type_or_present | denotes | + |
T20624 | 605-610 | PR_EXT:000013524 | denotes | Pygo2 |
T20623 | 601-602 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20622 | 599-600 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20621 | 594-599 | PR_EXT:000013523 | denotes | Pygo1 |
T20620 | 583-584 | SO_EXT:normal_or_wild_type_or_present | denotes | + |
T20619 | 581-582 | SO_EXT:normal_or_wild_type_or_present | denotes | + |
T20618 | 576-581 | PR_EXT:000013524 | denotes | Pygo2 |
T20617 | 572-573 | SO_EXT:sequence_nullness_or_absence | denotes | - |
T20616 | 570-571 | SO_EXT:normal_or_wild_type_or_present | denotes | + |
T20615 | 565-570 | PR_EXT:000013523 | denotes | Pygo1 |
T20614 | 545-555 | SO_EXT:transgenic_entity | denotes | transgenic |
T20613 | 483-491 | SO_EXT:genotype_or_entity_with_genotype | denotes | genotype |
T20612 | 469-476 | CHEBI_PR_EXT:protein | denotes | protein |
T20611 | 380-386 | CHEBI_GO_SO_EXT:enzyme | denotes | Enzyme |
T20610 | 367-372 | GO_EXT:0004565 | denotes | β-Gal |
T20609 | 331-341 | GO:0010467 | denotes | expression |
T20608 | 325-330 | GO_EXT:0004565 | denotes | β-Gal |
T20607 | 315-324 | SO_EXT:0000902 | denotes | transgene |
T20606 | 287-295 | CHEBI:75958 | denotes | solution |
T20605 | 272-277 | CHEBI:75055 | denotes | X-gal |
T20604 | 241-247 | UBERON:0002113 | denotes | kidney |
T20603 | 194-209 | GO_EXT:0004565 | denotes | β-galactosidase |
T20602 | 106-113 | UBERON:0002113 | denotes | kidneys |
T20601 | 83-90 | UBERON:0000922 | denotes | embryos |
T20600 | 60-65 | CHEBI:75055 | denotes | X-gal |
T20599 | 36-59 | GO:0060070 | denotes | canonical Wnt signaling |
T20598 | 8-17 | SO_EXT:0000902 | denotes | transgene |
T20597 | 4-7 | GO_EXT:0015925 | denotes | gal |
craft-ca-core-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20592 | 576-581 | PR:000013524 | denotes | Pygo2 |
T20591 | 565-570 | PR:000013523 | denotes | Pygo1 |
T20589 | 315-324 | SO:0000902 | denotes | transgene |
T20588 | 287-295 | CHEBI:75958 | denotes | solution |
T20587 | 272-277 | CHEBI:75055 | denotes | X-gal |
T20586 | 241-247 | UBERON:0002113 | denotes | kidney |
T20585 | 106-113 | UBERON:0002113 | denotes | kidneys |
T20584 | 83-90 | UBERON:0000922 | denotes | embryos |
T20583 | 60-65 | CHEBI:75055 | denotes | X-gal |
T20582 | 36-59 | GO:0060070 | denotes | canonical Wnt signaling |
T20581 | 8-17 | SO:0000902 | denotes | transgene |
T20596 | 638-643 | PR:000013524 | denotes | Pygo2 |
T20595 | 627-632 | PR:000013523 | denotes | Pygo1 |
T20594 | 605-610 | PR:000013524 | denotes | Pygo2 |
T20593 | 594-599 | PR:000013523 | denotes | Pygo1 |
T20590 | 331-341 | GO:0010467 | denotes | expression |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
17425782-12626757-8469490 | 153-155 | 12626757 | denotes | 21 |