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PMC:1858683 / 27786-28512 JSONTXT

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Id Subject Object Predicate Lexical cue
T12571 505-509 IN denotes with
T12570 503-505 , denotes ,
T12569 482-495 RB denotes significantly
T12568 477-481 VBD denotes were
T12567 475-476 -RRB- denotes ]
T12566 473-475 CD denotes 30
T12565 472-473 -LRB- denotes [
T12564 466-471 NN denotes Wisp1
T12563 462-465 CC denotes and
T12562 460-462 , denotes ,
T12561 459-460 -RRB- denotes ]
T12560 457-459 CD denotes 29
T12559 456-457 -LRB- denotes [
T12558 446-452 NN denotes cyclin
T12557 453-455 NN denotes D1
T12556 437-445 VBG denotes encoding
T12555 431-436 NN denotes Ccnd1
T12554 428-430 IN denotes of
T12553 496-503 VBN denotes changed
T12552 413-416 DT denotes the
T12551 417-427 NN denotes expression
T12550 408-412 RB denotes Only
T12549 407-576 sentence denotes Only the expression of Ccnd1 encoding cyclin D1 [29], and Wisp1 [30] were significantly changed, with expression level changes of <1.5-fold in Pygo1/Pygo2 null kidneys.
T12548 406-407 . denotes .
T12547 405-406 -RRB- denotes )
T12546 404-405 CD denotes 8
T12545 397-403 NN denotes Figure
T12544 396-397 -LRB- denotes (
T12543 381-387 NN denotes mutant
T12542 377-380 CC denotes and
T12541 388-395 NNS denotes kidneys
T12540 371-372 HYPH denotes -
T12539 372-376 NN denotes type
T12538 367-371 JJ denotes wild
T12537 359-366 IN denotes between
T12536 348-358 NN denotes expression
T12535 345-347 IN denotes in
T12534 333-344 NNS denotes differences
T12533 329-332 JJ denotes few
T12532 324-328 RB denotes very
T12531 304-310 NN denotes target
T12530 300-303 NN denotes Wnt
T12529 294-299 VBN denotes known
T12528 311-316 NNS denotes genes
T12527 290-293 DT denotes the
T12526 288-290 , denotes ,
T12525 317-323 VBD denotes showed
T12524 278-288 RB denotes Remarkably
T12523 277-407 sentence denotes Remarkably, the known Wnt target genes showed very few differences in expression between wild-type and mutant kidneys (Figure 8).
T12522 276-277 . denotes .
T12521 261-265 JJ denotes down
T12520 266-276 NN denotes regulation
T12519 249-260 JJ denotes significant
T12518 238-248 VB denotes illustrate
T12517 235-237 TO denotes to
T12516 224-234 NNS denotes references
T12515 221-223 IN denotes as
T12514 207-211 VBD denotes were
T12513 212-220 VBN denotes included
T12512 196-201 NN denotes probe
T12511 190-195 NN denotes Pygo2
T12510 186-189 CC denotes and
T12509 202-206 NNS denotes sets
T12508 180-185 NN denotes Pygo1
T12507 175-179 CC denotes Both
T12506 174-277 sentence denotes Both Pygo1 and Pygo2 probe sets were included as references to illustrate significant down regulation.
T12505 173-174 . denotes .
T12504 168-172 IN denotes from
T12503 155-158 VBD denotes was
T12502 143-146 NN denotes Wnt
T12501 147-154 NNS denotes targets
T12500 137-142 JJ denotes known
T12499 134-136 IN denotes of
T12498 159-167 VBN denotes compiled
T12497 129-133 NN denotes list
T12496 127-128 DT denotes A
T12495 126-174 sentence denotes A list of known Wnt targets was compiled from .
T12494 125-126 . denotes .
T12493 109-110 SYM denotes -
T12492 108-109 HYPH denotes /
T12491 107-108 SYM denotes -
T12490 102-107 NN denotes Pygo2
T12489 101-102 HYPH denotes /
T12488 100-101 SYM denotes -
T12487 99-100 HYPH denotes /
T12486 98-99 SYM denotes -
T12485 111-117 NN denotes mutant
T12484 93-98 NN denotes Pygo1
T12483 118-125 NNS denotes kidneys
T12482 89-92 DT denotes the
T12481 86-88 IN denotes in
T12480 74-77 NN denotes Wnt
T12479 78-85 NNS denotes targets
T12478 68-73 VBN denotes known
T12477 57-67 RB denotes previously
T12476 54-56 IN denotes of
T12475 35-42 VBN denotes altered
T12474 26-34 JJ denotes possible
T12473 43-53 NN denotes expression
T12472 22-25 DT denotes the
T12471 19-21 IN denotes in
T12470 8-18 JJ denotes interested
T12469 3-7 VBD denotes were
T12468 0-2 PRP denotes We
T12596 645-647 IN denotes of
T12595 634-644 NN denotes expression
T12594 631-633 IN denotes in
T12593 623-630 NNS denotes changes
T12592 614-622 JJ denotes dramatic
T12591 611-613 IN denotes of
T12590 603-610 NN denotes absence
T12589 600-602 DT denotes an
T12588 591-599 VBP denotes indicate
T12587 583-590 NNS denotes results
T12586 577-582 DT denotes These
T12585 576-726 sentence denotes These results indicate an absence of dramatic changes in expression of previously known Wnt signaling target genes in the Pygo1/Pygo2 mutant kidneys.
T12584 575-576 . denotes .
T12583 568-575 NNS denotes kidneys
T12582 563-567 JJ denotes null
T12581 556-557 HYPH denotes /
T12580 557-562 NN denotes Pygo2
T12579 551-556 NN denotes Pygo1
T12578 548-550 IN denotes in
T12577 539-547 RB denotes 1.5-fold
T12576 538-539 SYM denotes <
T12575 535-537 IN denotes of
T12574 527-534 NNS denotes changes
T12573 521-526 NN denotes level
T12572 510-520 NN denotes expression
T12610 725-726 . denotes .
T12609 711-717 NN denotes mutant
T12608 704-705 HYPH denotes /
T12607 705-710 NN denotes Pygo2
T12606 699-704 NN denotes Pygo1
T12605 718-725 NNS denotes kidneys
T12604 695-698 DT denotes the
T12603 692-694 IN denotes in
T12602 679-685 NN denotes target
T12601 669-678 NN denotes signaling
T12600 665-668 NN denotes Wnt
T12599 686-691 NNS denotes genes
T12598 659-664 VBN denotes known
T12597 648-658 RB denotes previously
R3413 T12468 T12469 nsubj We,were
R3414 T12470 T12469 acomp interested,were
R3415 T12471 T12470 prep in,interested
R3416 T12472 T12473 det the,expression
R3417 T12473 T12471 pobj expression,in
R3418 T12474 T12473 amod possible,expression
R3419 T12475 T12473 amod altered,expression
R3420 T12476 T12473 prep of,expression
R3421 T12477 T12478 advmod previously,known
R3422 T12478 T12479 amod known,targets
R3423 T12479 T12476 pobj targets,of
R3424 T12480 T12479 compound Wnt,targets
R3425 T12481 T12469 prep in,were
R3426 T12482 T12483 det the,kidneys
R3427 T12483 T12481 pobj kidneys,in
R3428 T12484 T12485 nmod Pygo1,mutant
R3429 T12485 T12483 compound mutant,kidneys
R3430 T12486 T12484 punct -,Pygo1
R3431 T12487 T12484 punct /,Pygo1
R3432 T12488 T12484 punct -,Pygo1
R3433 T12489 T12484 punct /,Pygo1
R3434 T12490 T12484 appos Pygo2,Pygo1
R3435 T12491 T12490 punct -,Pygo2
R3436 T12492 T12490 punct /,Pygo2
R3437 T12493 T12490 punct -,Pygo2
R3438 T12494 T12469 punct .,were
R3439 T12496 T12497 det A,list
R3440 T12497 T12498 nsubjpass list,compiled
R3441 T12499 T12497 prep of,list
R3442 T12500 T12501 amod known,targets
R3443 T12501 T12499 pobj targets,of
R3444 T12502 T12501 compound Wnt,targets
R3445 T12503 T12498 auxpass was,compiled
R3446 T12504 T12498 prep from,compiled
R3447 T12505 T12498 punct .,compiled
R3448 T12507 T12508 preconj Both,Pygo1
R3449 T12508 T12509 nmod Pygo1,sets
R3450 T12509 T12513 nsubjpass sets,included
R3451 T12510 T12508 cc and,Pygo1
R3452 T12511 T12508 conj Pygo2,Pygo1
R3453 T12512 T12509 compound probe,sets
R3454 T12514 T12513 auxpass were,included
R3455 T12515 T12513 prep as,included
R3456 T12516 T12515 pobj references,as
R3457 T12517 T12518 aux to,illustrate
R3458 T12518 T12513 advcl illustrate,included
R3459 T12519 T12520 amod significant,regulation
R3460 T12520 T12518 dobj regulation,illustrate
R3461 T12521 T12520 amod down,regulation
R3462 T12522 T12513 punct .,included
R3463 T12524 T12525 advmod Remarkably,showed
R3464 T12526 T12525 punct ", ",showed
R3465 T12527 T12528 det the,genes
R3466 T12528 T12525 nsubj genes,showed
R3467 T12529 T12528 amod known,genes
R3468 T12530 T12531 compound Wnt,target
R3469 T12531 T12528 compound target,genes
R3470 T12532 T12533 advmod very,few
R3471 T12533 T12534 amod few,differences
R3472 T12534 T12525 dobj differences,showed
R3473 T12535 T12534 prep in,differences
R3474 T12536 T12535 pobj expression,in
R3475 T12537 T12534 prep between,differences
R3476 T12538 T12539 amod wild,type
R3477 T12539 T12541 nmod type,kidneys
R3478 T12540 T12539 punct -,type
R3479 T12541 T12537 pobj kidneys,between
R3480 T12542 T12539 cc and,type
R3481 T12543 T12539 conj mutant,type
R3482 T12544 T12545 punct (,Figure
R3483 T12545 T12525 parataxis Figure,showed
R3484 T12546 T12545 nummod 8,Figure
R3485 T12547 T12545 punct ),Figure
R3486 T12548 T12525 punct .,showed
R3487 T12550 T12551 advmod Only,expression
R3488 T12551 T12553 nsubjpass expression,changed
R3489 T12552 T12551 det the,expression
R3490 T12554 T12551 prep of,expression
R3491 T12555 T12556 npadvmod Ccnd1,encoding
R3492 T12556 T12557 amod encoding,D1
R3493 T12557 T12554 pobj D1,of
R3494 T12558 T12557 compound cyclin,D1
R3495 T12559 T12560 punct [,29
R3496 T12560 T12557 parataxis 29,D1
R3497 T12561 T12560 punct ],29
R3498 T12562 T12557 punct ", ",D1
R3499 T12563 T12557 cc and,D1
R3500 T12564 T12557 conj Wisp1,D1
R3501 T12565 T12566 punct [,30
R3502 T12566 T12564 parataxis 30,Wisp1
R3503 T12567 T12566 punct ],30
R3504 T12568 T12553 auxpass were,changed
R3505 T12569 T12553 advmod significantly,changed
R3506 T12570 T12553 punct ", ",changed
R3507 T12571 T12553 prep with,changed
R3508 T12572 T12573 compound expression,level
R3509 T12573 T12574 compound level,changes
R3510 T12574 T12571 pobj changes,with
R3511 T12575 T12574 prep of,changes
R3512 T12576 T12577 punct <,1.5-fold
R3513 T12577 T12575 pobj 1.5-fold,of
R3514 T12578 T12574 prep in,changes
R3515 T12579 T12580 compound Pygo1,Pygo2
R3516 T12580 T12582 npadvmod Pygo2,null
R3517 T12581 T12580 punct /,Pygo2
R3518 T12582 T12583 amod null,kidneys
R3519 T12583 T12578 pobj kidneys,in
R3520 T12584 T12553 punct .,changed
R3521 T12586 T12587 det These,results
R3522 T12587 T12588 nsubj results,indicate
R3523 T12589 T12590 det an,absence
R3524 T12590 T12588 dobj absence,indicate
R3525 T12591 T12590 prep of,absence
R3526 T12592 T12593 amod dramatic,changes
R3527 T12593 T12591 pobj changes,of
R3528 T12594 T12593 prep in,changes
R3529 T12595 T12594 pobj expression,in
R3530 T12596 T12595 prep of,expression
R3531 T12597 T12598 advmod previously,known
R3532 T12598 T12599 amod known,genes
R3534 T12600 T12601 compound Wnt,signaling
R3533 T12599 T12596 pobj genes,of
R3535 T12601 T12599 compound signaling,genes
R3536 T12602 T12599 compound target,genes
R3537 T12603 T12595 prep in,expression
R3538 T12604 T12605 det the,kidneys
R3539 T12605 T12603 pobj kidneys,in
R3540 T12606 T12607 compound Pygo1,Pygo2
R3541 T12607 T12609 compound Pygo2,mutant
R3542 T12608 T12607 punct /,Pygo2
R3543 T12609 T12605 compound mutant,kidneys
R3544 T12610 T12588 punct .,indicate

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12032 699-704 PR_EXT:000013523 denotes Pygo1
T12031 686-691 SO_EXT:0000704 denotes genes
T12030 665-678 GO:0016055 denotes Wnt signaling
T12029 634-644 GO:0010467 denotes expression
T12028 568-575 UBERON:0002113 denotes kidneys
T12027 563-567 SO_EXT:sequence_nullness denotes null
T12026 557-562 PR_EXT:000013524 denotes Pygo2
T12025 551-556 PR_EXT:000013523 denotes Pygo1
T12024 510-520 GO:0010467 denotes expression
T12023 466-471 PR_EXT:000017426 denotes Wisp1
T12022 446-455 PR_EXT:000005121 denotes cyclin D1
T12021 437-445 SO_EXT:sequence_coding_function denotes encoding
T12020 431-436 PR_EXT:000005121 denotes Ccnd1
T12019 417-427 GO:0010467 denotes expression
T12018 388-395 UBERON:0002113 denotes kidneys
T12017 381-387 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12016 367-376 SO_EXT:wild_type_entity_or_quality denotes wild-type
T12015 348-358 GO:0010467 denotes expression
T12014 311-316 SO_EXT:0000704 denotes genes
T12013 261-276 GO_EXT:negative_regulation denotes down regulation
T12012 196-201 CHEBI_SO_EXT:molecular_probe denotes probe
T12011 190-195 PR_EXT:000013524 denotes Pygo2
T12010 180-185 PR_EXT:000013523 denotes Pygo1
T12009 118-125 UBERON:0002113 denotes kidneys
T12008 111-117 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12007 109-110 SO_EXT:sequence_nullness_or_absence denotes -
T12006 107-108 SO_EXT:sequence_nullness_or_absence denotes -
T12005 102-107 PR_EXT:000013524 denotes Pygo2
T12004 100-101 SO_EXT:sequence_nullness_or_absence denotes -
T12003 98-99 SO_EXT:sequence_nullness_or_absence denotes -
T12002 93-98 PR_EXT:000013523 denotes Pygo1
T12001 43-53 GO:0010467 denotes expression
T12035 718-725 UBERON:0002113 denotes kidneys
T12034 711-717 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12033 705-710 PR_EXT:000013524 denotes Pygo2

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11896 718-725 UBERON:0002113 denotes kidneys
T11895 705-710 PR:000013524 denotes Pygo2
T11894 699-704 PR:000013523 denotes Pygo1
T11893 686-691 SO:0000704 denotes genes
T11892 665-678 GO:0016055 denotes Wnt signaling
T11891 634-644 GO:0010467 denotes expression
T11890 568-575 UBERON:0002113 denotes kidneys
T11889 557-562 PR:000013524 denotes Pygo2
T11888 551-556 PR:000013523 denotes Pygo1
T11887 510-520 GO:0010467 denotes expression
T11886 466-471 PR:000017426 denotes Wisp1
T11885 446-455 PR:000005121 denotes cyclin D1
T11884 431-436 PR:000005121 denotes Ccnd1
T11883 417-427 GO:0010467 denotes expression
T11882 388-395 UBERON:0002113 denotes kidneys
T11881 348-358 GO:0010467 denotes expression
T11880 311-316 SO:0000704 denotes genes
T11879 190-195 PR:000013524 denotes Pygo2
T11878 180-185 PR:000013523 denotes Pygo1
T11877 118-125 UBERON:0002113 denotes kidneys
T11876 102-107 PR:000013524 denotes Pygo2
T11875 93-98 PR:000013523 denotes Pygo1
T11874 43-53 GO:0010467 denotes expression

2_test

Id Subject Object Predicate Lexical cue
17425782-10318916-8469470 457-459 10318916 denotes 29
17425782-10716946-8469471 473-475 10716946 denotes 30