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PMC:1853120 / 47416-48011 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T25230 0-9 VBN denotes Dissected
T25231 10-16 NNS denotes testes
T25232 22-27 VBN denotes fixed
T25233 17-21 VBD denotes were
T25234 28-30 IN denotes in
T25235 31-36 NNP denotes Bouin
T25236 39-47 NN denotes fixative
T25237 36-38 POS denotes 's
T25238 48-50 CC denotes or
T25239 51-60 NN denotes phosphate
T25240 61-69 VBN denotes buffered
T25241 60-61 HYPH denotes -
T25242 70-78 NN denotes formalin
T25243 79-88 RB denotes overnight
T25244 89-91 IN denotes at
T25245 92-93 CD denotes 4
T25246 94-96 NN denotes °C
T25247 96-98 , denotes ,
T25248 98-111 RB denotes progressively
T25249 112-122 VBN denotes dehydrated
T25250 123-125 IN denotes in
T25251 126-127 DT denotes a
T25252 143-149 NN denotes series
T25253 128-134 VBN denotes graded
T25254 135-142 NN denotes ethanol
T25255 149-151 , denotes ,
T25256 151-154 CC denotes and
T25257 155-163 VBN denotes embedded
T25258 164-166 IN denotes in
T25259 167-175 NN denotes paraffin
T25260 176-179 NN denotes wax
T25261 179-180 . denotes .
T25262 180-269 sentence denotes Sections (6 μm) were deparaffinized, rehydrated, and stained with hematoxylin and eosin.
T25263 181-189 NNS denotes Sections
T25264 202-216 VBN denotes deparaffinized
T25265 190-191 -LRB- denotes (
T25266 193-195 NNS denotes μm
T25267 191-192 CD denotes 6
T25268 195-196 -RRB- denotes )
T25269 197-201 VBD denotes were
T25270 216-218 , denotes ,
T25271 218-228 VBN denotes rehydrated
T25272 228-230 , denotes ,
T25273 230-233 CC denotes and
T25274 234-241 VBN denotes stained
T25275 242-246 IN denotes with
T25276 247-258 NN denotes hematoxylin
T25277 259-262 CC denotes and
T25278 263-268 NN denotes eosin
T25279 268-269 . denotes .
T25280 269-432 sentence denotes For TUNEL analyses, deparaffinized sections were treated with proteinase K for 15 min and quenched in 3.0% hydrogen peroxide in PBS for 5 min at room temperature.
T25281 270-273 IN denotes For
T25282 319-326 VBN denotes treated
T25283 274-279 NN denotes TUNEL
T25284 280-288 NNS denotes analyses
T25285 288-290 , denotes ,
T25286 290-304 VBN denotes deparaffinized
T25287 305-313 NNS denotes sections
T25288 314-318 VBD denotes were
T25289 327-331 IN denotes with
T25290 332-342 NN denotes proteinase
T25291 343-344 NN denotes K
T25292 345-348 IN denotes for
T25293 349-351 CD denotes 15
T25294 352-355 NNS denotes min
T25295 356-359 CC denotes and
T25296 360-368 VBN denotes quenched
T25297 369-371 IN denotes in
T25298 372-375 CD denotes 3.0
T25299 375-376 NN denotes %
T25300 386-394 NN denotes peroxide
T25301 377-385 NN denotes hydrogen
T25302 395-397 IN denotes in
T25303 398-401 NN denotes PBS
T25304 402-405 IN denotes for
T25305 406-407 CD denotes 5
T25306 408-411 NNS denotes min
T25307 412-414 IN denotes at
T25308 415-419 NN denotes room
T25309 420-431 NN denotes temperature
T25310 431-432 . denotes .
T25311 432-595 sentence denotes Subsequently, nuclear staining in apoptotic cells was detected using ApopTag kit (Chemicon, http://www.chemicon.com) according to the manufacturer's instructions.
T25312 433-445 RB denotes Subsequently
T25313 487-495 VBN denotes detected
T25314 445-447 , denotes ,
T25315 447-454 JJ denotes nuclear
T25316 455-463 NN denotes staining
T25317 464-466 IN denotes in
T25318 467-476 JJ denotes apoptotic
T25319 477-482 NNS denotes cells
T25320 483-486 VBD denotes was
T25321 496-501 VBG denotes using
T25322 502-509 NN denotes ApopTag
T25323 510-513 NN denotes kit
T25324 514-515 -LRB- denotes (
T25325 515-523 NNP denotes Chemicon
T25326 523-525 , denotes ,
T25327 525-548 NN denotes http://www.chemicon.com
T25328 548-549 -RRB- denotes )
T25329 550-559 VBG denotes according
T25330 560-562 IN denotes to
T25331 563-566 DT denotes the
T25332 567-579 NN denotes manufacturer
T25333 582-594 NNS denotes instructions
T25334 579-581 POS denotes 's
T25335 594-595 . denotes .
R7002 T25230 T25231 amod Dissected,testes
R7003 T25231 T25232 nsubjpass testes,fixed
R7004 T25233 T25232 auxpass were,fixed
R7005 T25234 T25232 prep in,fixed
R7006 T25235 T25236 poss Bouin,fixative
R7007 T25236 T25234 pobj fixative,in
R7008 T25237 T25235 case 's,Bouin
R7009 T25238 T25236 cc or,fixative
R7010 T25239 T25240 npadvmod phosphate,buffered
R7011 T25240 T25242 amod buffered,formalin
R7012 T25241 T25240 punct -,buffered
R7013 T25242 T25236 conj formalin,fixative
R7014 T25243 T25232 advmod overnight,fixed
R7015 T25244 T25232 prep at,fixed
R7016 T25245 T25246 nummod 4,°C
R7017 T25246 T25244 pobj °C,at
R7018 T25247 T25232 punct ", ",fixed
R7019 T25248 T25249 advmod progressively,dehydrated
R7020 T25249 T25232 conj dehydrated,fixed
R7021 T25250 T25249 prep in,dehydrated
R7022 T25251 T25252 det a,series
R7023 T25252 T25250 pobj series,in
R7024 T25253 T25252 amod graded,series
R7025 T25254 T25252 compound ethanol,series
R7026 T25255 T25249 punct ", ",dehydrated
R7027 T25256 T25249 cc and,dehydrated
R7028 T25257 T25249 conj embedded,dehydrated
R7029 T25258 T25257 prep in,embedded
R7030 T25259 T25260 compound paraffin,wax
R7031 T25260 T25258 pobj wax,in
R7032 T25261 T25232 punct .,fixed
R7033 T25263 T25264 nsubjpass Sections,deparaffinized
R7034 T25265 T25266 punct (,μm
R7035 T25266 T25263 parataxis μm,Sections
R7036 T25267 T25266 nummod 6,μm
R7037 T25268 T25266 punct ),μm
R7038 T25269 T25264 auxpass were,deparaffinized
R7039 T25270 T25264 punct ", ",deparaffinized
R7040 T25271 T25264 conj rehydrated,deparaffinized
R7041 T25272 T25271 punct ", ",rehydrated
R7042 T25273 T25271 cc and,rehydrated
R7043 T25274 T25271 conj stained,rehydrated
R7044 T25275 T25274 prep with,stained
R7045 T25276 T25275 pobj hematoxylin,with
R7046 T25277 T25276 cc and,hematoxylin
R7047 T25278 T25276 conj eosin,hematoxylin
R7048 T25279 T25264 punct .,deparaffinized
R7049 T25281 T25282 prep For,treated
R7050 T25283 T25284 compound TUNEL,analyses
R7051 T25284 T25281 pobj analyses,For
R7052 T25285 T25282 punct ", ",treated
R7053 T25286 T25287 amod deparaffinized,sections
R7054 T25287 T25282 nsubjpass sections,treated
R7055 T25288 T25282 auxpass were,treated
R7056 T25289 T25282 prep with,treated
R7057 T25290 T25291 compound proteinase,K
R7058 T25291 T25289 pobj K,with
R7059 T25292 T25282 prep for,treated
R7060 T25293 T25294 nummod 15,min
R7061 T25294 T25292 pobj min,for
R7062 T25295 T25282 cc and,treated
R7063 T25296 T25282 conj quenched,treated
R7064 T25297 T25296 prep in,quenched
R7065 T25298 T25299 nummod 3.0,%
R7066 T25299 T25300 compound %,peroxide
R7067 T25300 T25297 pobj peroxide,in
R7068 T25301 T25300 compound hydrogen,peroxide
R7069 T25302 T25296 prep in,quenched
R7070 T25303 T25302 pobj PBS,in
R7071 T25304 T25296 prep for,quenched
R7072 T25305 T25306 nummod 5,min
R7073 T25306 T25304 pobj min,for
R7074 T25307 T25296 prep at,quenched
R7075 T25308 T25309 compound room,temperature
R7076 T25309 T25307 pobj temperature,at
R7077 T25310 T25282 punct .,treated
R7078 T25312 T25313 advmod Subsequently,detected
R7079 T25314 T25313 punct ", ",detected
R7080 T25315 T25316 amod nuclear,staining
R7081 T25316 T25313 nsubjpass staining,detected
R7082 T25317 T25316 prep in,staining
R7083 T25318 T25319 amod apoptotic,cells
R7084 T25319 T25317 pobj cells,in
R7085 T25320 T25313 auxpass was,detected
R7086 T25321 T25313 advcl using,detected
R7087 T25322 T25323 compound ApopTag,kit
R7088 T25323 T25321 dobj kit,using
R7089 T25324 T25325 punct (,Chemicon
R7090 T25325 T25323 parataxis Chemicon,kit
R7091 T25326 T25325 punct ", ",Chemicon
R7092 T25327 T25325 npadvmod http://www.chemicon.com,Chemicon
R7093 T25328 T25325 punct ),Chemicon
R7094 T25329 T25321 prep according,using
R7095 T25330 T25329 prep to,according
R7096 T25331 T25332 det the,manufacturer
R7097 T25332 T25333 poss manufacturer,instructions
R7098 T25333 T25330 pobj instructions,to
R7099 T25334 T25332 case 's,manufacturer
R7100 T25335 T25313 punct .,detected

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T25199 10-16 UBERON:0000473 denotes testes
T25200 39-47 CHEBI:50913 denotes fixative
T25201 70-78 CHEBI:16842 denotes formalin
T25202 135-142 CHEBI:16236 denotes ethanol
T25203 176-179 CHEBI:73702 denotes wax
T25204 247-258 CHEBI:51686 denotes hematoxylin
T25205 377-394 CHEBI:16240 denotes hydrogen peroxide
T25206 447-454 GO:0005634 denotes nuclear
T25207 467-482 CL:0000445 denotes apoptotic cells

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T25208 10-16 UBERON:0000473 denotes testes
T25209 39-47 CHEBI_EXT:50913 denotes fixative
T25210 51-60 CHEBI_EXT:phosphate denotes phosphate
T25211 61-69 CHEBI_CHMO_EXT:buffer_process denotes buffered
T25212 70-78 CHEBI:16842 denotes formalin
T25213 135-142 CHEBI:16236 denotes ethanol
T25214 176-179 CHEBI:73702 denotes wax
T25215 247-258 CHEBI:51686 denotes hematoxylin
T25216 263-268 CHEBI_EXT:eosin denotes eosin
T25217 332-342 GO_EXT:0008233 denotes proteinase
T25218 377-394 CHEBI:16240 denotes hydrogen peroxide
T25219 447-454 GO:0005634 denotes nuclear
T25220 467-476 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T25221 467-482 CL:0000445 denotes apoptotic cells
T25222 477-482 CL_GO_EXT:cell denotes cells