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PMC:1853120 / 47377-48011 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T25224 13-21 NN denotes analysis
T25223 0-12 JJ denotes Histological
T25225 22-25 CC denotes and
T25226 26-31 NN denotes TUNEL
T25227 32-37 NN denotes assay
T25228 37-38 . denotes .
T25229 38-219 sentence denotes Dissected testes were fixed in Bouin's fixative or phosphate-buffered formalin overnight at 4 °C, progressively dehydrated in a graded ethanol series, and embedded in paraffin wax.
T25230 39-48 VBN denotes Dissected
T25231 49-55 NNS denotes testes
T25232 61-66 VBN denotes fixed
T25233 56-60 VBD denotes were
T25234 67-69 IN denotes in
T25235 70-75 NNP denotes Bouin
T25236 78-86 NN denotes fixative
T25237 75-77 POS denotes 's
T25238 87-89 CC denotes or
T25239 90-99 NN denotes phosphate
T25240 100-108 VBN denotes buffered
T25241 99-100 HYPH denotes -
T25242 109-117 NN denotes formalin
T25243 118-127 RB denotes overnight
T25244 128-130 IN denotes at
T25245 131-132 CD denotes 4
T25246 133-135 NN denotes °C
T25247 135-137 , denotes ,
T25248 137-150 RB denotes progressively
T25249 151-161 VBN denotes dehydrated
T25250 162-164 IN denotes in
T25251 165-166 DT denotes a
T25252 182-188 NN denotes series
T25253 167-173 VBN denotes graded
T25254 174-181 NN denotes ethanol
T25255 188-190 , denotes ,
T25256 190-193 CC denotes and
T25257 194-202 VBN denotes embedded
T25258 203-205 IN denotes in
T25259 206-214 NN denotes paraffin
T25260 215-218 NN denotes wax
T25261 218-219 . denotes .
T25262 219-308 sentence denotes Sections (6 μm) were deparaffinized, rehydrated, and stained with hematoxylin and eosin.
T25263 220-228 NNS denotes Sections
T25264 241-255 VBN denotes deparaffinized
T25265 229-230 -LRB- denotes (
T25266 232-234 NNS denotes μm
T25267 230-231 CD denotes 6
T25268 234-235 -RRB- denotes )
T25269 236-240 VBD denotes were
T25270 255-257 , denotes ,
T25271 257-267 VBN denotes rehydrated
T25272 267-269 , denotes ,
T25273 269-272 CC denotes and
T25274 273-280 VBN denotes stained
T25275 281-285 IN denotes with
T25276 286-297 NN denotes hematoxylin
T25277 298-301 CC denotes and
T25278 302-307 NN denotes eosin
T25279 307-308 . denotes .
T25280 308-471 sentence denotes For TUNEL analyses, deparaffinized sections were treated with proteinase K for 15 min and quenched in 3.0% hydrogen peroxide in PBS for 5 min at room temperature.
T25281 309-312 IN denotes For
T25282 358-365 VBN denotes treated
T25283 313-318 NN denotes TUNEL
T25284 319-327 NNS denotes analyses
T25285 327-329 , denotes ,
T25286 329-343 VBN denotes deparaffinized
T25287 344-352 NNS denotes sections
T25288 353-357 VBD denotes were
T25289 366-370 IN denotes with
T25290 371-381 NN denotes proteinase
T25291 382-383 NN denotes K
T25292 384-387 IN denotes for
T25293 388-390 CD denotes 15
T25294 391-394 NNS denotes min
T25295 395-398 CC denotes and
T25296 399-407 VBN denotes quenched
T25297 408-410 IN denotes in
T25298 411-414 CD denotes 3.0
T25299 414-415 NN denotes %
T25300 425-433 NN denotes peroxide
T25301 416-424 NN denotes hydrogen
T25302 434-436 IN denotes in
T25303 437-440 NN denotes PBS
T25304 441-444 IN denotes for
T25305 445-446 CD denotes 5
T25306 447-450 NNS denotes min
T25307 451-453 IN denotes at
T25308 454-458 NN denotes room
T25309 459-470 NN denotes temperature
T25310 470-471 . denotes .
T25311 471-634 sentence denotes Subsequently, nuclear staining in apoptotic cells was detected using ApopTag kit (Chemicon, http://www.chemicon.com) according to the manufacturer's instructions.
T25312 472-484 RB denotes Subsequently
T25313 526-534 VBN denotes detected
T25314 484-486 , denotes ,
T25315 486-493 JJ denotes nuclear
T25316 494-502 NN denotes staining
T25317 503-505 IN denotes in
T25318 506-515 JJ denotes apoptotic
T25319 516-521 NNS denotes cells
T25320 522-525 VBD denotes was
T25321 535-540 VBG denotes using
T25322 541-548 NN denotes ApopTag
T25323 549-552 NN denotes kit
T25324 553-554 -LRB- denotes (
T25325 554-562 NNP denotes Chemicon
T25326 562-564 , denotes ,
T25327 564-587 NN denotes http://www.chemicon.com
T25328 587-588 -RRB- denotes )
T25329 589-598 VBG denotes according
T25330 599-601 IN denotes to
T25331 602-605 DT denotes the
T25332 606-618 NN denotes manufacturer
T25333 621-633 NNS denotes instructions
T25334 618-620 POS denotes 's
T25335 633-634 . denotes .
R6997 T25223 T25224 amod Histological,analysis
R6998 T25225 T25224 cc and,analysis
R6999 T25226 T25227 compound TUNEL,assay
R7000 T25227 T25224 conj assay,analysis
R7001 T25228 T25227 punct .,assay
R7002 T25230 T25231 amod Dissected,testes
R7003 T25231 T25232 nsubjpass testes,fixed
R7004 T25233 T25232 auxpass were,fixed
R7005 T25234 T25232 prep in,fixed
R7006 T25235 T25236 poss Bouin,fixative
R7007 T25236 T25234 pobj fixative,in
R7008 T25237 T25235 case 's,Bouin
R7009 T25238 T25236 cc or,fixative
R7010 T25239 T25240 npadvmod phosphate,buffered
R7011 T25240 T25242 amod buffered,formalin
R7012 T25241 T25240 punct -,buffered
R7013 T25242 T25236 conj formalin,fixative
R7014 T25243 T25232 advmod overnight,fixed
R7015 T25244 T25232 prep at,fixed
R7016 T25245 T25246 nummod 4,°C
R7017 T25246 T25244 pobj °C,at
R7018 T25247 T25232 punct ", ",fixed
R7019 T25248 T25249 advmod progressively,dehydrated
R7020 T25249 T25232 conj dehydrated,fixed
R7021 T25250 T25249 prep in,dehydrated
R7022 T25251 T25252 det a,series
R7023 T25252 T25250 pobj series,in
R7024 T25253 T25252 amod graded,series
R7025 T25254 T25252 compound ethanol,series
R7026 T25255 T25249 punct ", ",dehydrated
R7027 T25256 T25249 cc and,dehydrated
R7028 T25257 T25249 conj embedded,dehydrated
R7029 T25258 T25257 prep in,embedded
R7030 T25259 T25260 compound paraffin,wax
R7031 T25260 T25258 pobj wax,in
R7032 T25261 T25232 punct .,fixed
R7033 T25263 T25264 nsubjpass Sections,deparaffinized
R7034 T25265 T25266 punct (,μm
R7035 T25266 T25263 parataxis μm,Sections
R7036 T25267 T25266 nummod 6,μm
R7037 T25268 T25266 punct ),μm
R7038 T25269 T25264 auxpass were,deparaffinized
R7039 T25270 T25264 punct ", ",deparaffinized
R7040 T25271 T25264 conj rehydrated,deparaffinized
R7041 T25272 T25271 punct ", ",rehydrated
R7042 T25273 T25271 cc and,rehydrated
R7043 T25274 T25271 conj stained,rehydrated
R7044 T25275 T25274 prep with,stained
R7045 T25276 T25275 pobj hematoxylin,with
R7046 T25277 T25276 cc and,hematoxylin
R7047 T25278 T25276 conj eosin,hematoxylin
R7048 T25279 T25264 punct .,deparaffinized
R7049 T25281 T25282 prep For,treated
R7050 T25283 T25284 compound TUNEL,analyses
R7051 T25284 T25281 pobj analyses,For
R7052 T25285 T25282 punct ", ",treated
R7053 T25286 T25287 amod deparaffinized,sections
R7054 T25287 T25282 nsubjpass sections,treated
R7055 T25288 T25282 auxpass were,treated
R7056 T25289 T25282 prep with,treated
R7057 T25290 T25291 compound proteinase,K
R7058 T25291 T25289 pobj K,with
R7059 T25292 T25282 prep for,treated
R7060 T25293 T25294 nummod 15,min
R7061 T25294 T25292 pobj min,for
R7062 T25295 T25282 cc and,treated
R7063 T25296 T25282 conj quenched,treated
R7064 T25297 T25296 prep in,quenched
R7065 T25298 T25299 nummod 3.0,%
R7066 T25299 T25300 compound %,peroxide
R7067 T25300 T25297 pobj peroxide,in
R7068 T25301 T25300 compound hydrogen,peroxide
R7069 T25302 T25296 prep in,quenched
R7070 T25303 T25302 pobj PBS,in
R7071 T25304 T25296 prep for,quenched
R7072 T25305 T25306 nummod 5,min
R7073 T25306 T25304 pobj min,for
R7074 T25307 T25296 prep at,quenched
R7075 T25308 T25309 compound room,temperature
R7076 T25309 T25307 pobj temperature,at
R7077 T25310 T25282 punct .,treated
R7078 T25312 T25313 advmod Subsequently,detected
R7079 T25314 T25313 punct ", ",detected
R7080 T25315 T25316 amod nuclear,staining
R7081 T25316 T25313 nsubjpass staining,detected
R7082 T25317 T25316 prep in,staining
R7083 T25318 T25319 amod apoptotic,cells
R7084 T25319 T25317 pobj cells,in
R7085 T25320 T25313 auxpass was,detected
R7086 T25321 T25313 advcl using,detected
R7087 T25322 T25323 compound ApopTag,kit
R7088 T25323 T25321 dobj kit,using
R7089 T25324 T25325 punct (,Chemicon
R7090 T25325 T25323 parataxis Chemicon,kit
R7091 T25326 T25325 punct ", ",Chemicon
R7092 T25327 T25325 npadvmod http://www.chemicon.com,Chemicon
R7093 T25328 T25325 punct ),Chemicon
R7094 T25329 T25321 prep according,using
R7095 T25330 T25329 prep to,according
R7096 T25331 T25332 det the,manufacturer
R7097 T25332 T25333 poss manufacturer,instructions
R7098 T25333 T25330 pobj instructions,to
R7099 T25334 T25332 case 's,manufacturer
R7100 T25335 T25313 punct .,detected

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T25199 49-55 UBERON:0000473 denotes testes
T25200 78-86 CHEBI:50913 denotes fixative
T25201 109-117 CHEBI:16842 denotes formalin
T25202 174-181 CHEBI:16236 denotes ethanol
T25203 215-218 CHEBI:73702 denotes wax
T25204 286-297 CHEBI:51686 denotes hematoxylin
T25205 416-433 CHEBI:16240 denotes hydrogen peroxide
T25206 486-493 GO:0005634 denotes nuclear
T25207 506-521 CL:0000445 denotes apoptotic cells

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T25208 49-55 UBERON:0000473 denotes testes
T25209 78-86 CHEBI_EXT:50913 denotes fixative
T25210 90-99 CHEBI_EXT:phosphate denotes phosphate
T25211 100-108 CHEBI_CHMO_EXT:buffer_process denotes buffered
T25212 109-117 CHEBI:16842 denotes formalin
T25213 174-181 CHEBI:16236 denotes ethanol
T25214 215-218 CHEBI:73702 denotes wax
T25215 286-297 CHEBI:51686 denotes hematoxylin
T25216 302-307 CHEBI_EXT:eosin denotes eosin
T25217 371-381 GO_EXT:0008233 denotes proteinase
T25218 416-433 CHEBI:16240 denotes hydrogen peroxide
T25219 486-493 GO:0005634 denotes nuclear
T25220 506-515 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T25221 506-521 CL:0000445 denotes apoptotic cells
T25222 516-521 CL_GO_EXT:cell denotes cells