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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1852316","sourcedb":"PMC","sourceid":"1852316","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1852316","text":"Our approach is to calculate phylogenic similarity for gene-gene pairs follows the methodology proposed by [20] (referred to as 'likelihood of neighboring profiles' in their work). In this analysis all bacteria sequence information is downloaded from [24] and all preliminary gene/TF interactions are from [14]. Once we have phylogenic similarity scores for all gene pairs, we calculate the gene/TF scores based on the methodology described in the From Gene-Gene Scores to Gene/TF Scores Section.","tracks":[{"project":"2_test","denotations":[{"id":"17397539-15901854-1689497","span":{"begin":108,"end":110},"obj":"15901854"}],"attributes":[{"subj":"17397539-15901854-1689497","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#93bcec","default":true}]}]}}