PMC:1679804 / 154431-155591 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1679804","sourcedb":"PMC","sourceid":"1679804","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1679804","text":"Table 11 Potential Binding Sites\nGenes UASH URS1H Hamming Distance\nSite Pos Site Pos\nMES1 GATTTTGAAGTAGGA -438 TTAGCCGCCGA -246 5:MER1\nYJL045W TTTTGTGAAGAGATA -407 TTAGCCGCTCA -273 4:DMC1\nHSP60 GTTTTTGTAGGTATA -329 ATAGCCGCCCA -252 5:MER1\nSPO1 ATTTTTGAAGTTAAC -192 TCAGCGGCTAT -90 5:RED1\nMEK1 TCATTTGTAGTTTAT -233 TCGGCGGCTAT -136 3:MEK1\nYIG1 ATTTCCGGAGTTTTC -183 TCGGCGGCTAT -140 5:RED1\n†AGP1 CCTTTTGATGACTTT -786 TCGGCGGCTAA -699 5:SPO16\n†AGPl CCTTTTGATGACTTT -786 TCGGCGGCTAA -668 5:SPO16\n†REC114 CATTTTGGTGGGTTC -158 TGGGCGGCTAA -94 5:SPO16\n†GNTl TCATTTGGAGAATAT -340 ATAGCCGCCAT -299 5:SPO13\n‡MEK1 TTATATGCAGTATAT -276 ATGGCGGCTAA -150 4:MEK1\n‡MMS1 AACTCTGTAGTTATA -643 TGGGCGGCTAA -497 5:REC114\nFor each occurrence we give the gene names corresponding to the upstream region, the sites and positions for UASH and URS1H, and also the hamming distance and the closest known gene with the cooperative binding sites. For example, 5:SPO16 in the first row means that the hamming distance between AGP1 and SPO16 was 5. †: found only by IUPAC pattern search, ‡: found only by profile search.","divisions":[{"label":"label","span":{"begin":0,"end":8}},{"label":"caption","span":{"begin":10,"end":33}},{"label":"p","span":{"begin":10,"end":33}},{"label":"table","span":{"begin":34,"end":770}},{"label":"tr","span":{"begin":34,"end":73}},{"label":"td","span":{"begin":34,"end":40}},{"label":"td","span":{"begin":41,"end":46}},{"label":"td","span":{"begin":48,"end":54}},{"label":"td","span":{"begin":56,"end":73}},{"label":"tr","span":{"begin":74,"end":94}},{"label":"td","span":{"begin":74,"end":78}},{"label":"td","span":{"begin":80,"end":83}},{"label":"td","span":{"begin":85,"end":89}},{"label":"td","span":{"begin":91,"end":94}},{"label":"tr","span":{"begin":95,"end":149}},{"label":"td","span":{"begin":95,"end":99}},{"label":"td","span":{"begin":101,"end":116}},{"label":"td","span":{"begin":118,"end":122}},{"label":"td","span":{"begin":124,"end":135}},{"label":"td","span":{"begin":137,"end":141}},{"label":"td","span":{"begin":143,"end":149}},{"label":"tr","span":{"begin":150,"end":207}},{"label":"td","span":{"begin":150,"end":157}},{"label":"td","span":{"begin":159,"end":174}},{"label":"td","span":{"begin":176,"end":180}},{"label":"td","span":{"begin":182,"end":193}},{"label":"td","span":{"begin":195,"end":199}},{"label":"td","span":{"begin":201,"end":207}},{"label":"tr","span":{"begin":208,"end":263}},{"label":"td","span":{"begin":208,"end":213}},{"label":"td","span":{"begin":215,"end":230}},{"label":"td","span":{"begin":232,"end":236}},{"label":"td","span":{"begin":238,"end":249}},{"label":"td","span":{"begin":251,"end":255}},{"label":"td","span":{"begin":257,"end":263}},{"label":"tr","span":{"begin":264,"end":317}},{"label":"td","span":{"begin":264,"end":268}},{"label":"td","span":{"begin":270,"end":285}},{"label":"td","span":{"begin":287,"end":291}},{"label":"td","span":{"begin":293,"end":304}},{"label":"td","span":{"begin":306,"end":309}},{"label":"td","span":{"begin":311,"end":317}},{"label":"tr","span":{"begin":318,"end":372}},{"label":"td","span":{"begin":318,"end":322}},{"label":"td","span":{"begin":324,"end":339}},{"label":"td","span":{"begin":341,"end":345}},{"label":"td","span":{"begin":347,"end":358}},{"label":"td","span":{"begin":360,"end":364}},{"label":"td","span":{"begin":366,"end":372}},{"label":"tr","span":{"begin":373,"end":427}},{"label":"td","span":{"begin":373,"end":377}},{"label":"td","span":{"begin":379,"end":394}},{"label":"td","span":{"begin":396,"end":400}},{"label":"td","span":{"begin":402,"end":413}},{"label":"td","span":{"begin":415,"end":419}},{"label":"td","span":{"begin":421,"end":427}},{"label":"tr","span":{"begin":428,"end":484}},{"label":"td","span":{"begin":428,"end":433}},{"label":"td","span":{"begin":435,"end":450}},{"label":"td","span":{"begin":452,"end":456}},{"label":"td","span":{"begin":458,"end":469}},{"label":"td","span":{"begin":471,"end":475}},{"label":"td","span":{"begin":477,"end":484}},{"label":"tr","span":{"begin":485,"end":541}},{"label":"td","span":{"begin":485,"end":490}},{"label":"td","span":{"begin":492,"end":507}},{"label":"td","span":{"begin":509,"end":513}},{"label":"td","span":{"begin":515,"end":526}},{"label":"td","span":{"begin":528,"end":532}},{"label":"td","span":{"begin":534,"end":541}},{"label":"tr","span":{"begin":542,"end":599}},{"label":"td","span":{"begin":542,"end":549}},{"label":"td","span":{"begin":551,"end":566}},{"label":"td","span":{"begin":568,"end":572}},{"label":"td","span":{"begin":574,"end":585}},{"label":"td","span":{"begin":587,"end":590}},{"label":"td","span":{"begin":592,"end":599}},{"label":"tr","span":{"begin":600,"end":656}},{"label":"td","span":{"begin":600,"end":605}},{"label":"td","span":{"begin":607,"end":622}},{"label":"td","span":{"begin":624,"end":628}},{"label":"td","span":{"begin":630,"end":641}},{"label":"td","span":{"begin":643,"end":647}},{"label":"td","span":{"begin":649,"end":656}},{"label":"tr","span":{"begin":657,"end":712}},{"label":"td","span":{"begin":657,"end":662}},{"label":"td","span":{"begin":664,"end":679}},{"label":"td","span":{"begin":681,"end":685}},{"label":"td","span":{"begin":687,"end":698}},{"label":"td","span":{"begin":700,"end":704}},{"label":"td","span":{"begin":706,"end":712}},{"label":"tr","span":{"begin":713,"end":770}},{"label":"td","span":{"begin":713,"end":718}},{"label":"td","span":{"begin":720,"end":735}},{"label":"td","span":{"begin":737,"end":741}},{"label":"td","span":{"begin":743,"end":754}},{"label":"td","span":{"begin":756,"end":760}},{"label":"td","span":{"begin":762,"end":770}}],"tracks":[]}