Table 11  Potential Binding Sites
Genes   UASH   URS1H   Hamming Distance
Site  Pos  Site  Pos
MES1  GATTTTGAAGTAGGA  -438  TTAGCCGCCGA  -246  5:MER1
YJL045W  TTTTGTGAAGAGATA  -407  TTAGCCGCTCA  -273  4:DMC1
HSP60  GTTTTTGTAGGTATA  -329  ATAGCCGCCCA  -252  5:MER1
SPO1  ATTTTTGAAGTTAAC  -192  TCAGCGGCTAT  -90  5:RED1
MEK1  TCATTTGTAGTTTAT  -233  TCGGCGGCTAT  -136  3:MEK1
YIG1  ATTTCCGGAGTTTTC  -183  TCGGCGGCTAT  -140  5:RED1
†AGP1  CCTTTTGATGACTTT  -786  TCGGCGGCTAA  -699  5:SPO16
†AGPl  CCTTTTGATGACTTT  -786  TCGGCGGCTAA  -668  5:SPO16
†REC114  CATTTTGGTGGGTTC  -158  TGGGCGGCTAA  -94  5:SPO16
†GNTl  TCATTTGGAGAATAT  -340  ATAGCCGCCAT  -299  5:SPO13
‡MEK1  TTATATGCAGTATAT  -276  ATGGCGGCTAA  -150  4:MEK1
‡MMS1  AACTCTGTAGTTATA  -643  TGGGCGGCTAA  -497  5:REC114
For each occurrence we give the gene names corresponding to the upstream region, the sites and positions for UASH and URS1H, and also the hamming distance and the closest known gene with the cooperative binding sites. For example, 5:SPO16 in the first row means that the hamming distance between AGP1 and SPO16 was 5. †: found only by IUPAC pattern search, ‡: found only by profile search.