> top > docs > PMC:1635039 > spans > 19780-20425 > annotations

PMC:1635039 / 19780-20425 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T20254 287-288 -LRB- denotes (
T20179 10-18 JJ denotes Aberrant
T20180 19-28 NN denotes apoptosis
T20181 29-31 IN denotes of
T20182 32-36 NNS denotes NCCs
T20183 37-39 IN denotes in
T20184 40-44 NN denotes Alk5
T20185 50-53 NN denotes Cre
T20186 44-45 HYPH denotes /
T20187 45-49 NN denotes Wnt1
T20188 49-50 HYPH denotes -
T20189 54-61 NNS denotes mutants
T20190 61-62 . denotes .
T20191 62-428 sentence denotes TUNEL (A-H) and Cleaved Caspase-3 (I, J) staining at E11.0 demonstrates a notable increase in apoptosis in Alk5/Wnt1-Cre mutants (B, H, J) on the aortic sac level when compared to controls (A, G, I) or Alk2/Wnt1-Cre mutants (C) (frontal sections), while sections on the OFT level do not demonstrate differences between controls (D) and Alk5 (E) or Alk2 (F) mutants.
T20192 63-68 NN denotes TUNEL
T20193 104-112 NN denotes staining
T20194 69-70 -LRB- denotes (
T20195 70-71 NN denotes A
T20196 71-72 SYM denotes -
T20197 72-73 NN denotes H
T20198 73-74 -RRB- denotes )
T20199 75-78 CC denotes and
T20200 79-86 VBN denotes Cleaved
T20201 87-94 NN denotes Caspase
T20202 94-95 HYPH denotes -
T20203 95-96 CD denotes 3
T20204 97-98 -LRB- denotes (
T20205 101-102 NN denotes J
T20206 98-99 NN denotes I
T20207 99-101 , denotes ,
T20208 102-103 -RRB- denotes )
T20209 122-134 VBZ denotes demonstrates
T20210 113-115 IN denotes at
T20211 116-121 NN denotes E11.0
T20212 135-136 DT denotes a
T20213 145-153 NN denotes increase
T20214 137-144 JJ denotes notable
T20215 154-156 IN denotes in
T20216 157-166 NN denotes apoptosis
T20217 167-169 IN denotes in
T20218 170-174 NN denotes Alk5
T20219 180-183 NN denotes Cre
T20220 174-175 HYPH denotes /
T20221 175-179 NN denotes Wnt1
T20222 179-180 HYPH denotes -
T20223 184-191 NNS denotes mutants
T20224 192-193 -LRB- denotes (
T20225 199-200 NN denotes J
T20226 193-194 NN denotes B
T20227 194-196 , denotes ,
T20228 196-197 NN denotes H
T20229 197-199 , denotes ,
T20230 200-201 -RRB- denotes )
T20231 202-204 IN denotes on
T20232 205-208 DT denotes the
T20233 220-225 NN denotes level
T20234 209-215 JJ denotes aortic
T20235 216-219 NN denotes sac
T20236 226-230 WRB denotes when
T20237 231-239 VBN denotes compared
T20238 240-242 IN denotes to
T20239 243-251 NNS denotes controls
T20240 252-253 -LRB- denotes (
T20241 259-260 NN denotes I
T20242 253-254 NN denotes A
T20243 254-256 , denotes ,
T20244 256-257 NN denotes G
T20245 257-259 , denotes ,
T20246 260-261 -RRB- denotes )
T20247 262-264 CC denotes or
T20248 265-269 NN denotes Alk2
T20249 275-278 NN denotes Cre
T20250 269-270 HYPH denotes /
T20251 270-274 NN denotes Wnt1
T20252 274-275 HYPH denotes -
T20253 279-286 NNS denotes mutants
T20255 288-289 NN denotes C
T20256 289-290 -RRB- denotes )
T20257 291-292 -LRB- denotes (
T20258 300-308 NNS denotes sections
T20259 292-299 JJ denotes frontal
T20260 308-309 -RRB- denotes )
T20261 309-311 , denotes ,
T20262 311-316 IN denotes while
T20263 350-361 VB denotes demonstrate
T20264 317-325 NNS denotes sections
T20265 326-328 IN denotes on
T20266 329-332 DT denotes the
T20267 337-342 NN denotes level
T20268 333-336 NN denotes OFT
T20269 343-345 VBP denotes do
T20270 346-349 RB denotes not
T20271 362-373 NNS denotes differences
T20272 374-381 IN denotes between
T20273 382-390 NNS denotes controls
T20274 391-392 -LRB- denotes (
T20275 392-393 NN denotes D
T20276 393-394 -RRB- denotes )
T20277 395-398 CC denotes and
T20278 399-403 NN denotes Alk5
T20279 420-427 NNS denotes mutants
T20280 404-405 -LRB- denotes (
T20281 405-406 NN denotes E
T20282 406-407 -RRB- denotes )
T20283 408-410 CC denotes or
T20284 411-415 NN denotes Alk2
T20285 416-417 -LRB- denotes (
T20286 417-418 NN denotes F
T20287 418-419 -RRB- denotes )
T20288 427-428 . denotes .
T20289 428-534 sentence denotes G,H, TUNEL staining of lacZ-stained embryos demonstrates that apoptotic cells are of neural crest origin.
T20290 429-430 LS denotes G
T20291 473-485 VBZ denotes demonstrates
T20292 430-431 , denotes ,
T20293 431-432 LS denotes H
T20294 432-434 , denotes ,
T20295 434-439 NN denotes TUNEL
T20296 440-448 NN denotes staining
T20297 449-451 IN denotes of
T20298 452-456 NN denotes lacZ
T20299 457-464 VBN denotes stained
T20300 456-457 HYPH denotes -
T20301 465-472 NNS denotes embryos
T20302 486-490 IN denotes that
T20303 507-510 VBP denotes are
T20304 491-500 JJ denotes apoptotic
T20305 501-506 NNS denotes cells
T20306 511-513 IN denotes of
T20307 514-520 JJ denotes neural
T20308 521-526 NN denotes crest
T20309 527-533 NN denotes origin
T20310 533-534 . denotes .
T20311 534-557 sentence denotes G, control; H, mutant.
T20312 535-536 NN denotes G
T20313 536-538 , denotes ,
T20314 538-545 NN denotes control
T20315 545-546 : denotes ;
T20316 547-548 NN denotes H
T20317 548-550 , denotes ,
T20318 550-556 NN denotes mutant
T20319 556-557 . denotes .
T20320 557-645 sentence denotes AS, aortic sac, arrows point to clusters of apoptotic cells surrounding the aortic sac.
T20321 558-560 JJ denotes AS
T20322 581-586 VBP denotes point
T20323 560-562 , denotes ,
T20324 562-568 JJ denotes aortic
T20325 569-572 NN denotes sac
T20326 572-574 , denotes ,
T20327 574-580 NNS denotes arrows
T20328 587-589 IN denotes to
T20329 590-598 NNS denotes clusters
T20330 599-601 IN denotes of
T20331 602-611 JJ denotes apoptotic
T20332 612-617 NNS denotes cells
T20333 618-629 VBG denotes surrounding
T20334 630-633 DT denotes the
T20335 641-644 NN denotes sac
T20336 634-640 JJ denotes aortic
T20337 644-645 . denotes .
R6122 T20179 T20180 amod Aberrant,apoptosis
R6123 T20181 T20180 prep of,apoptosis
R6124 T20182 T20181 pobj NCCs,of
R6125 T20183 T20180 prep in,apoptosis
R6126 T20184 T20185 compound Alk5,Cre
R6127 T20185 T20189 compound Cre,mutants
R6128 T20186 T20185 punct /,Cre
R6129 T20187 T20185 compound Wnt1,Cre
R6130 T20188 T20185 punct -,Cre
R6131 T20189 T20183 pobj mutants,in
R6132 T20190 T20180 punct .,apoptosis
R6133 T20192 T20193 nmod TUNEL,staining
R6134 T20193 T20209 nsubj staining,demonstrates
R6135 T20194 T20195 punct (,A
R6136 T20195 T20192 parataxis A,TUNEL
R6137 T20196 T20197 punct -,H
R6138 T20197 T20195 prep H,A
R6139 T20198 T20195 punct ),A
R6140 T20199 T20192 cc and,TUNEL
R6141 T20200 T20201 amod Cleaved,Caspase
R6142 T20201 T20192 conj Caspase,TUNEL
R6143 T20202 T20201 punct -,Caspase
R6144 T20203 T20201 nummod 3,Caspase
R6145 T20204 T20205 punct (,J
R6146 T20205 T20201 parataxis J,Caspase
R6147 T20206 T20205 nmod I,J
R6148 T20207 T20205 punct ", ",J
R6149 T20208 T20205 punct ),J
R6150 T20210 T20193 prep at,staining
R6151 T20211 T20210 pobj E11.0,at
R6152 T20212 T20213 det a,increase
R6153 T20213 T20209 dobj increase,demonstrates
R6154 T20214 T20213 amod notable,increase
R6155 T20215 T20213 prep in,increase
R6156 T20216 T20215 pobj apoptosis,in
R6157 T20217 T20213 prep in,increase
R6158 T20218 T20219 compound Alk5,Cre
R6159 T20219 T20223 compound Cre,mutants
R6160 T20220 T20219 punct /,Cre
R6161 T20221 T20219 compound Wnt1,Cre
R6162 T20222 T20219 punct -,Cre
R6163 T20223 T20217 pobj mutants,in
R6164 T20224 T20225 punct (,J
R6165 T20225 T20223 parataxis J,mutants
R6166 T20226 T20225 nmod B,J
R6167 T20227 T20225 punct ", ",J
R6168 T20228 T20225 nmod H,J
R6169 T20229 T20225 punct ", ",J
R6170 T20230 T20225 punct ),J
R6171 T20231 T20213 prep on,increase
R6172 T20232 T20233 det the,level
R6173 T20233 T20231 pobj level,on
R6174 T20234 T20233 amod aortic,level
R6175 T20235 T20233 compound sac,level
R6176 T20236 T20237 advmod when,compared
R6177 T20237 T20213 advcl compared,increase
R6178 T20238 T20237 prep to,compared
R6179 T20239 T20238 pobj controls,to
R6180 T20240 T20241 punct (,I
R6181 T20241 T20239 parataxis I,controls
R6182 T20242 T20241 nmod A,I
R6183 T20243 T20241 punct ", ",I
R6184 T20244 T20241 nmod G,I
R6185 T20245 T20241 punct ", ",I
R6186 T20246 T20241 punct ),I
R6187 T20247 T20239 cc or,controls
R6188 T20248 T20249 compound Alk2,Cre
R6189 T20249 T20253 compound Cre,mutants
R6190 T20250 T20249 punct /,Cre
R6191 T20251 T20249 compound Wnt1,Cre
R6192 T20252 T20249 punct -,Cre
R6193 T20253 T20239 conj mutants,controls
R6194 T20254 T20255 punct (,C
R6195 T20255 T20253 parataxis C,mutants
R6196 T20256 T20255 punct ),C
R6197 T20257 T20258 punct (,sections
R6198 T20258 T20253 parataxis sections,mutants
R6199 T20259 T20258 amod frontal,sections
R6200 T20260 T20258 punct ),sections
R6201 T20261 T20209 punct ", ",demonstrates
R6202 T20262 T20263 mark while,demonstrate
R6203 T20263 T20209 advcl demonstrate,demonstrates
R6204 T20264 T20263 nsubj sections,demonstrate
R6205 T20265 T20264 prep on,sections
R6206 T20266 T20267 det the,level
R6207 T20267 T20265 pobj level,on
R6208 T20268 T20267 compound OFT,level
R6209 T20269 T20263 aux do,demonstrate
R6210 T20270 T20263 neg not,demonstrate
R6211 T20271 T20263 dobj differences,demonstrate
R6212 T20272 T20271 prep between,differences
R6213 T20273 T20272 pobj controls,between
R6214 T20274 T20275 punct (,D
R6215 T20275 T20273 parataxis D,controls
R6216 T20276 T20275 punct ),D
R6217 T20277 T20273 cc and,controls
R6218 T20278 T20279 nmod Alk5,mutants
R6219 T20279 T20273 conj mutants,controls
R6220 T20280 T20281 punct (,E
R6221 T20281 T20278 parataxis E,Alk5
R6222 T20282 T20281 punct ),E
R6223 T20283 T20278 cc or,Alk5
R6224 T20284 T20278 conj Alk2,Alk5
R6225 T20285 T20286 punct (,F
R6226 T20286 T20284 parataxis F,Alk2
R6227 T20287 T20286 punct ),F
R6228 T20288 T20209 punct .,demonstrates
R6229 T20290 T20291 meta G,demonstrates
R6230 T20292 T20290 punct ",",G
R6231 T20293 T20290 dep H,G
R6232 T20294 T20291 punct ", ",demonstrates
R6233 T20295 T20296 compound TUNEL,staining
R6234 T20296 T20291 nsubj staining,demonstrates
R6235 T20297 T20296 prep of,staining
R6236 T20298 T20299 npadvmod lacZ,stained
R6237 T20299 T20301 amod stained,embryos
R6238 T20300 T20299 punct -,stained
R6239 T20301 T20297 pobj embryos,of
R6240 T20302 T20303 mark that,are
R6241 T20303 T20291 ccomp are,demonstrates
R6242 T20304 T20305 amod apoptotic,cells
R6243 T20305 T20303 nsubj cells,are
R6244 T20306 T20303 prep of,are
R6245 T20307 T20308 amod neural,crest
R6246 T20308 T20309 compound crest,origin
R6247 T20309 T20306 pobj origin,of
R6248 T20310 T20291 punct .,demonstrates
R6249 T20313 T20312 punct ", ",G
R6250 T20314 T20312 appos control,G
R6251 T20315 T20312 punct ;,G
R6252 T20316 T20312 appos H,G
R6253 T20317 T20316 punct ", ",H
R6254 T20318 T20316 appos mutant,H
R6255 T20319 T20312 punct .,G
R6256 T20321 T20322 dep AS,point
R6257 T20323 T20321 punct ", ",AS
R6258 T20324 T20325 amod aortic,sac
R6259 T20325 T20321 appos sac,AS
R6260 T20326 T20322 punct ", ",point
R6261 T20327 T20322 nsubj arrows,point
R6262 T20328 T20322 prep to,point
R6263 T20329 T20328 pobj clusters,to
R6264 T20330 T20329 prep of,clusters
R6265 T20331 T20332 amod apoptotic,cells
R6266 T20332 T20330 pobj cells,of
R6267 T20333 T20329 acl surrounding,clusters
R6268 T20334 T20335 det the,sac
R6269 T20335 T20333 dobj sac,surrounding
R6270 T20336 T20335 amod aortic,sac
R6271 T20337 T20322 punct .,point

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20145 19-28 GO:0006915 denotes apoptosis
T20146 32-36 CL_EXT:neural_crest_cell denotes NCCs
T20147 40-44 PR_EXT:000000047 denotes Alk5
T20148 45-49 PR_EXT:000017435 denotes Wnt1
T20149 54-61 SO_EXT:sequence_altered_entity denotes mutants
T20150 79-86 MOP:0000780 denotes Cleaved
T20151 79-96 PR_EXT:000018762 denotes Cleaved Caspase-3
T20152 157-166 GO:0006915 denotes apoptosis
T20153 170-174 PR_EXT:000000047 denotes Alk5
T20154 175-179 PR_EXT:000017435 denotes Wnt1
T20155 184-191 SO_EXT:sequence_altered_entity denotes mutants
T20156 209-219 UBERON:0005432 denotes aortic sac
T20157 265-269 PR_EXT:000000067 denotes Alk2
T20158 270-274 PR_EXT:000017435 denotes Wnt1
T20159 279-286 SO_EXT:sequence_altered_entity denotes mutants
T20160 333-336 UBERON:0004145 denotes OFT
T20161 399-403 PR_EXT:000000047 denotes Alk5
T20162 411-415 PR_EXT:000000067 denotes Alk2
T20163 420-427 SO_EXT:sequence_altered_entity denotes mutants
T20164 452-456 PR_EXT:000033987 denotes lacZ
T20165 465-472 UBERON:0000922 denotes embryos
T20166 491-500 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T20167 491-506 CL:0000445 denotes apoptotic cells
T20168 501-506 CL_GO_EXT:cell denotes cells
T20169 514-526 UBERON:0002342 denotes neural crest
T20170 550-556 SO_EXT:sequence_altered_entity denotes mutant
T20171 558-560 UBERON:0005432 denotes AS
T20172 562-572 UBERON:0005432 denotes aortic sac
T20173 590-601 _FRAGMENT denotes clusters of
T20174 612-617 UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population denotes cells
T20175 602-611 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T20176 602-617 CL:0000445 denotes apoptotic cells
T20177 612-617 CL_GO_EXT:cell denotes cells
T20178 634-644 UBERON:0005432 denotes aortic sac
R6121 T20174 T20173 _lexicallyChainedTo cells,clusters of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20123 19-28 GO:0006915 denotes apoptosis
T20124 40-44 PR:000000047 denotes Alk5
T20125 45-49 PR:000017435 denotes Wnt1
T20126 79-86 MOP:0000780 denotes Cleaved
T20127 79-96 PR:000018762 denotes Cleaved Caspase-3
T20128 157-166 GO:0006915 denotes apoptosis
T20129 170-174 PR:000000047 denotes Alk5
T20130 175-179 PR:000017435 denotes Wnt1
T20131 209-219 UBERON:0005432 denotes aortic sac
T20132 265-269 PR:000000067 denotes Alk2
T20133 270-274 PR:000017435 denotes Wnt1
T20134 333-336 UBERON:0004145 denotes OFT
T20135 399-403 PR:000000047 denotes Alk5
T20136 411-415 PR:000000067 denotes Alk2
T20137 452-456 PR:000033987 denotes lacZ
T20138 465-472 UBERON:0000922 denotes embryos
T20139 491-506 CL:0000445 denotes apoptotic cells
T20140 514-526 UBERON:0002342 denotes neural crest
T20141 558-560 UBERON:0005432 denotes AS
T20142 562-572 UBERON:0005432 denotes aortic sac
T20143 602-617 CL:0000445 denotes apoptotic cells
T20144 634-644 UBERON:0005432 denotes aortic sac