> top > docs > PMC:1584416 > spans > 35052-35730 > annotations

PMC:1584416 / 35052-35730 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T6587 0-2 NN denotes UV
T6588 3-14 NN denotes sensitivity
T6589 14-16 , denotes ,
T6590 16-18 NN denotes UV
T6591 19-22 NN denotes UDS
T6592 18-19 HYPH denotes -
T6593 60-68 NN denotes activity
T6594 22-24 , denotes ,
T6595 24-26 NN denotes UV
T6596 27-30 NN denotes RRS
T6597 26-27 HYPH denotes -
T6598 30-32 , denotes ,
T6599 32-35 CC denotes and
T6600 36-41 NN denotes TFIIH
T6601 42-50 NN denotes incision
T6602 51-59 NN denotes excision
T6603 50-51 HYPH denotes /
T6604 68-69 . denotes .
T6605 69-156 sentence denotes UV survival, UV-UDS, and UV-RRS assays were performed as described previously [21,30].
T6606 70-72 NN denotes UV
T6607 73-81 NN denotes survival
T6608 102-108 NNS denotes assays
T6609 81-83 , denotes ,
T6610 83-85 NN denotes UV
T6611 86-89 NN denotes UDS
T6612 85-86 HYPH denotes -
T6613 89-91 , denotes ,
T6614 91-94 CC denotes and
T6615 95-97 NN denotes UV
T6616 98-101 NN denotes RRS
T6617 97-98 HYPH denotes -
T6618 114-123 VBN denotes performed
T6619 109-113 VBD denotes were
T6620 124-126 IN denotes as
T6621 127-136 VBN denotes described
T6622 137-147 RB denotes previously
T6623 148-149 -LRB- denotes [
T6624 152-154 CD denotes 30
T6625 149-151 CD denotes 21
T6626 151-152 , denotes ,
T6627 154-155 -RRB- denotes ]
T6628 155-156 . denotes .
T6629 156-315 sentence denotes For UV-RRS, average values from the representative experiment containing two wt, three XpdTTD/TTD, two XpdTTD/XPCS, and one XpdTTD/XP cell line are presented.
T6630 157-160 IN denotes For
T6631 305-314 VBN denotes presented
T6632 161-163 NN denotes UV
T6633 164-167 NN denotes RRS
T6634 163-164 HYPH denotes -
T6635 167-169 , denotes ,
T6636 169-176 JJ denotes average
T6637 177-183 NNS denotes values
T6638 184-188 IN denotes from
T6639 189-192 DT denotes the
T6640 208-218 NN denotes experiment
T6641 193-207 JJ denotes representative
T6642 219-229 VBG denotes containing
T6643 230-233 CD denotes two
T6644 234-236 NN denotes wt
T6645 296-300 NN denotes line
T6646 236-238 , denotes ,
T6647 238-243 CD denotes three
T6648 251-254 NN denotes TTD
T6649 244-250 NN denotes XpdTTD
T6650 250-251 HYPH denotes /
T6651 254-256 , denotes ,
T6652 256-259 CD denotes two
T6653 267-271 NN denotes XPCS
T6654 260-266 NN denotes XpdTTD
T6655 266-267 HYPH denotes /
T6656 271-273 , denotes ,
T6657 273-276 CC denotes and
T6658 277-280 CD denotes one
T6659 288-290 NN denotes XP
T6660 281-287 NN denotes XpdTTD
T6661 287-288 HYPH denotes /
T6662 291-295 NN denotes cell
T6663 301-304 VBP denotes are
T6664 314-315 . denotes .
T6665 315-563 sentence denotes The ~48% UV-UDS value presented in this study for XpdTTD/TTD cells differs from our previously published data of 25% UV-UDS [21], possibly because of the high variability intrinsic to the assay or routine variations in the cell culture conditions.
T6666 316-319 DT denotes The
T6667 332-337 NN denotes value
T6668 320-321 SYM denotes ~
T6669 321-323 CD denotes 48
T6670 323-324 NN denotes %
T6671 325-327 NN denotes UV
T6672 328-331 NN denotes UDS
T6673 327-328 HYPH denotes -
T6674 383-390 VBZ denotes differs
T6675 338-347 VBN denotes presented
T6676 348-350 IN denotes in
T6677 351-355 DT denotes this
T6678 356-361 NN denotes study
T6679 362-365 IN denotes for
T6680 366-372 NN denotes XpdTTD
T6681 373-376 NN denotes TTD
T6682 372-373 HYPH denotes /
T6683 377-382 NNS denotes cells
T6684 391-395 IN denotes from
T6685 396-399 PRP$ denotes our
T6686 421-425 NNS denotes data
T6687 400-410 RB denotes previously
T6688 411-420 VBN denotes published
T6689 426-428 IN denotes of
T6690 429-431 CD denotes 25
T6691 431-432 NN denotes %
T6692 436-439 NN denotes UDS
T6693 433-435 NN denotes UV
T6694 435-436 HYPH denotes -
T6695 440-441 -LRB- denotes [
T6696 441-443 CD denotes 21
T6697 443-444 -RRB- denotes ]
T6698 444-446 , denotes ,
T6699 446-454 RB denotes possibly
T6700 455-462 IN denotes because
T6701 463-465 IN denotes of
T6702 466-469 DT denotes the
T6703 475-486 NN denotes variability
T6704 470-474 JJ denotes high
T6705 487-496 JJ denotes intrinsic
T6706 497-499 IN denotes to
T6707 500-503 DT denotes the
T6708 504-509 NN denotes assay
T6709 510-512 CC denotes or
T6710 513-520 JJ denotes routine
T6711 521-531 NNS denotes variations
T6712 532-534 IN denotes in
T6713 535-538 DT denotes the
T6714 552-562 NNS denotes conditions
T6715 539-543 NN denotes cell
T6716 544-551 NN denotes culture
T6717 562-563 . denotes .
T6718 563-678 sentence denotes For the incision/excision activity assay, recombinant TFIIH was prepared and assayed as described previously [27].
T6719 564-567 IN denotes For
T6720 628-636 VBN denotes prepared
T6721 568-571 DT denotes the
T6722 599-604 NN denotes assay
T6723 572-580 NN denotes incision
T6724 581-589 NN denotes excision
T6725 580-581 HYPH denotes /
T6726 590-598 NN denotes activity
T6727 604-606 , denotes ,
T6728 606-617 JJ denotes recombinant
T6729 618-623 NN denotes TFIIH
T6730 624-627 VBD denotes was
T6731 637-640 CC denotes and
T6732 641-648 VBN denotes assayed
T6733 649-651 IN denotes as
T6734 652-661 VBN denotes described
T6735 662-672 RB denotes previously
T6736 673-674 -LRB- denotes [
T6737 674-676 CD denotes 27
T6738 676-677 -RRB- denotes ]
T6739 677-678 . denotes .
R4503 T6587 T6588 compound UV,sensitivity
R4504 T6589 T6588 punct ", ",sensitivity
R4505 T6590 T6591 nmod UV,UDS
R4506 T6591 T6593 nmod UDS,activity
R4507 T6592 T6591 punct -,UDS
R4508 T6593 T6588 appos activity,sensitivity
R4509 T6594 T6591 punct ", ",UDS
R4510 T6595 T6596 compound UV,RRS
R4511 T6596 T6591 conj RRS,UDS
R4512 T6597 T6596 punct -,RRS
R4513 T6598 T6596 punct ", ",RRS
R4514 T6599 T6596 cc and,RRS
R4515 T6600 T6596 conj TFIIH,RRS
R4516 T6601 T6602 compound incision,excision
R4517 T6602 T6593 compound excision,activity
R4518 T6603 T6602 punct /,excision
R4519 T6604 T6588 punct .,sensitivity
R4520 T6606 T6607 nmod UV,survival
R4521 T6607 T6608 nmod survival,assays
R4522 T6608 T6618 nsubjpass assays,performed
R4523 T6609 T6607 punct ", ",survival
R4524 T6610 T6611 compound UV,UDS
R4525 T6611 T6607 conj UDS,survival
R4526 T6612 T6611 punct -,UDS
R4527 T6613 T6611 punct ", ",UDS
R4528 T6614 T6611 cc and,UDS
R4529 T6615 T6616 compound UV,RRS
R4530 T6616 T6611 conj RRS,UDS
R4531 T6617 T6616 punct -,RRS
R4532 T6619 T6618 auxpass were,performed
R4533 T6620 T6621 mark as,described
R4534 T6621 T6618 advcl described,performed
R4535 T6622 T6621 advmod previously,described
R4536 T6623 T6624 punct [,30
R4537 T6624 T6618 parataxis 30,performed
R4538 T6625 T6624 nummod 21,30
R4539 T6626 T6624 punct ",",30
R4540 T6627 T6624 punct ],30
R4541 T6628 T6618 punct .,performed
R4542 T6630 T6631 prep For,presented
R4543 T6632 T6633 compound UV,RRS
R4544 T6633 T6630 pobj RRS,For
R4545 T6634 T6633 punct -,RRS
R4546 T6635 T6631 punct ", ",presented
R4547 T6636 T6637 amod average,values
R4548 T6637 T6631 nsubjpass values,presented
R4549 T6638 T6637 prep from,values
R4550 T6639 T6640 det the,experiment
R4551 T6640 T6638 pobj experiment,from
R4552 T6641 T6640 amod representative,experiment
R4553 T6642 T6640 acl containing,experiment
R4554 T6643 T6644 nummod two,wt
R4555 T6644 T6645 nmod wt,line
R4556 T6645 T6642 dobj line,containing
R4557 T6646 T6644 punct ", ",wt
R4558 T6647 T6648 nummod three,TTD
R4559 T6648 T6644 conj TTD,wt
R4560 T6649 T6648 compound XpdTTD,TTD
R4561 T6650 T6648 punct /,TTD
R4562 T6651 T6648 punct ", ",TTD
R4563 T6652 T6653 nummod two,XPCS
R4564 T6653 T6648 conj XPCS,TTD
R4565 T6654 T6653 compound XpdTTD,XPCS
R4566 T6655 T6653 punct /,XPCS
R4567 T6656 T6653 punct ", ",XPCS
R4568 T6657 T6653 cc and,XPCS
R4569 T6658 T6659 nummod one,XP
R4570 T6659 T6653 conj XP,XPCS
R4571 T6660 T6659 compound XpdTTD,XP
R4572 T6661 T6659 punct /,XP
R4573 T6662 T6645 compound cell,line
R4574 T6663 T6631 auxpass are,presented
R4575 T6664 T6631 punct .,presented
R4576 T6666 T6667 det The,value
R4577 T6667 T6674 nsubj value,differs
R4578 T6668 T6669 punct ~,48
R4579 T6669 T6670 nummod 48,%
R4580 T6670 T6667 compound %,value
R4581 T6671 T6672 compound UV,UDS
R4582 T6672 T6667 compound UDS,value
R4583 T6673 T6672 punct -,UDS
R4584 T6675 T6667 acl presented,value
R4585 T6676 T6675 prep in,presented
R4586 T6677 T6678 det this,study
R4587 T6678 T6676 pobj study,in
R4588 T6679 T6667 prep for,value
R4589 T6680 T6681 compound XpdTTD,TTD
R4590 T6681 T6683 compound TTD,cells
R4591 T6682 T6681 punct /,TTD
R4592 T6683 T6679 pobj cells,for
R4593 T6684 T6674 prep from,differs
R4594 T6685 T6686 poss our,data
R4595 T6686 T6684 pobj data,from
R4596 T6687 T6688 advmod previously,published
R4597 T6688 T6686 amod published,data
R4598 T6689 T6686 prep of,data
R4599 T6690 T6691 nummod 25,%
R4600 T6691 T6692 compound %,UDS
R4601 T6692 T6689 pobj UDS,of
R4602 T6693 T6692 compound UV,UDS
R4603 T6694 T6692 punct -,UDS
R4604 T6695 T6696 punct [,21
R4605 T6696 T6674 parataxis 21,differs
R4606 T6697 T6696 punct ],21
R4607 T6698 T6674 punct ", ",differs
R4608 T6699 T6700 advmod possibly,because
R4609 T6700 T6674 prep because,differs
R4610 T6701 T6700 prep of,because
R4611 T6702 T6703 det the,variability
R4612 T6703 T6701 pobj variability,of
R4613 T6704 T6703 amod high,variability
R4614 T6705 T6703 amod intrinsic,variability
R4615 T6706 T6705 prep to,intrinsic
R4616 T6707 T6708 det the,assay
R4617 T6708 T6706 pobj assay,to
R4618 T6709 T6708 cc or,assay
R4619 T6710 T6711 amod routine,variations
R4620 T6711 T6708 conj variations,assay
R4621 T6712 T6708 prep in,assay
R4622 T6713 T6714 det the,conditions
R4623 T6714 T6712 pobj conditions,in
R4624 T6715 T6716 compound cell,culture
R4625 T6716 T6714 compound culture,conditions
R4626 T6717 T6674 punct .,differs
R4627 T6719 T6720 prep For,prepared
R4628 T6721 T6722 det the,assay
R4629 T6722 T6719 pobj assay,For
R4630 T6723 T6724 compound incision,excision
R4631 T6724 T6722 compound excision,assay
R4632 T6725 T6724 punct /,excision
R4633 T6726 T6722 compound activity,assay
R4634 T6727 T6720 punct ", ",prepared
R4635 T6728 T6729 amod recombinant,TFIIH
R4636 T6729 T6720 nsubjpass TFIIH,prepared
R4637 T6730 T6720 auxpass was,prepared
R4638 T6731 T6720 cc and,prepared
R4639 T6732 T6720 conj assayed,prepared
R4640 T6733 T6734 mark as,described
R4641 T6734 T6732 advcl described,assayed
R4642 T6735 T6734 advmod previously,described
R4643 T6736 T6737 punct [,27
R4644 T6737 T6732 parataxis 27,assayed
R4645 T6738 T6737 punct ],27
R4646 T6739 T6720 punct .,prepared

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6564 36-41 GO:0005675 denotes TFIIH
T6565 42-50 MOP:0000780 denotes incision
T6566 244-247 PR:000007164 denotes Xpd
T6567 260-263 PR:000007164 denotes Xpd
T6568 281-284 PR:000007164 denotes Xpd
T6569 366-369 PR:000007164 denotes Xpd
T6570 572-580 MOP:0000780 denotes incision
T6571 618-623 GO:0005675 denotes TFIIH

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6572 36-41 GO:0005675 denotes TFIIH
T6573 42-50 MOP:0000780 denotes incision
T6574 51-59 SO_EXT:sequence_deletion_process denotes excision
T6575 234-236 SO_EXT:wild_type_entity_or_quality denotes wt
T6576 244-247 PR_EXT:000007164 denotes Xpd
T6577 260-263 PR_EXT:000007164 denotes Xpd
T6578 281-284 PR_EXT:000007164 denotes Xpd
T6579 291-295 CL_GO_EXT:cell denotes cell
T6580 366-369 PR_EXT:000007164 denotes Xpd
T6581 377-382 CL_GO_EXT:cell denotes cells
T6582 539-543 CL_GO_EXT:cell denotes cell
T6583 572-580 MOP:0000780 denotes incision
T6584 581-589 SO_EXT:sequence_deletion_process denotes excision
T6585 606-617 GO_SO_EXT:sequence_rearrangement_process denotes recombinant
T6586 618-623 GO:0005675 denotes TFIIH

2_test

Id Subject Object Predicate Lexical cue
17020410-9651581-84795169 149-151 9651581 denotes 21
17020410-12531012-84795170 152-154 12531012 denotes 30
17020410-9651581-84795171 441-443 9651581 denotes 21
17020410-12820975-84795172 674-676 12820975 denotes 27
T19802 149-151 9651581 denotes 21
T38157 152-154 12531012 denotes 30
T62073 441-443 9651581 denotes 21
T15235 674-676 12820975 denotes 27