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PMC:1584416 / 33991-35050 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6364 0-10 NN denotes Derivation
T6365 11-14 CC denotes and
T6366 15-23 NN denotes analysis
T6367 24-26 IN denotes of
T6368 27-33 JJ denotes mutant
T6369 34-38 NNS denotes mice
T6370 38-39 . denotes .
T6371 39-129 sentence denotes Generation of XpdTTD (XPDR722W) and XpdTTD/KO mice has been described previously [21,22].
T6372 40-50 NN denotes Generation
T6373 100-109 VBN denotes described
T6374 51-53 IN denotes of
T6375 54-60 NN denotes XpdTTD
T6376 86-90 NNS denotes mice
T6377 61-62 -LRB- denotes (
T6378 62-70 NN denotes XPDR722W
T6379 70-71 -RRB- denotes )
T6380 72-75 CC denotes and
T6381 76-82 NN denotes XpdTTD
T6382 83-85 NN denotes KO
T6383 82-83 HYPH denotes /
T6384 91-94 VBZ denotes has
T6385 95-99 VBN denotes been
T6386 110-120 RB denotes previously
T6387 121-122 -LRB- denotes [
T6388 125-127 CD denotes 22
T6389 122-124 CD denotes 21
T6390 124-125 , denotes ,
T6391 127-128 -RRB- denotes ]
T6392 128-129 . denotes .
T6393 129-318 sentence denotes A detailed description of the generation of targeting constructs for Xpd†XPCS and Xpd †XP alleles carrying mutations encoding the G602D and R683W alterations will be provided upon request.
T6394 130-131 DT denotes A
T6395 141-152 NN denotes description
T6396 132-140 JJ denotes detailed
T6397 296-304 VBN denotes provided
T6398 153-155 IN denotes of
T6399 156-159 DT denotes the
T6400 160-170 NN denotes generation
T6401 171-173 IN denotes of
T6402 174-183 VBG denotes targeting
T6403 184-194 NNS denotes constructs
T6404 195-198 IN denotes for
T6405 199-207 NN denotes Xpd†XPCS
T6406 220-227 NNS denotes alleles
T6407 208-211 CC denotes and
T6408 212-219 NN denotes Xpd †XP
T6409 228-236 VBG denotes carrying
T6410 237-246 NNS denotes mutations
T6411 247-255 VBG denotes encoding
T6412 256-259 DT denotes the
T6413 276-287 NNS denotes alterations
T6414 260-265 NN denotes G602D
T6415 266-269 CC denotes and
T6416 270-275 NN denotes R683W
T6417 288-292 MD denotes will
T6418 293-295 VB denotes be
T6419 305-309 IN denotes upon
T6420 310-317 NN denotes request
T6421 317-318 . denotes .
T6422 318-413 sentence denotes Chimeric mice and mouse embryonic fibroblasts were generated according to standard procedures.
T6423 319-327 JJ denotes Chimeric
T6424 353-364 NNS denotes fibroblasts
T6425 328-332 NNS denotes mice
T6426 333-336 CC denotes and
T6427 337-342 NN denotes mouse
T6428 343-352 JJ denotes embryonic
T6429 370-379 VBN denotes generated
T6430 365-369 VBD denotes were
T6431 380-389 VBG denotes according
T6432 390-392 IN denotes to
T6433 393-401 JJ denotes standard
T6434 402-412 NNS denotes procedures
T6435 412-413 . denotes .
T6436 413-493 sentence denotes Haematoxylin and eosin staining was performed according to standard procedures.
T6437 414-426 NN denotes Haematoxylin
T6438 437-445 NN denotes staining
T6439 427-430 CC denotes and
T6440 431-436 NN denotes eosin
T6441 450-459 VBN denotes performed
T6442 446-449 VBD denotes was
T6443 460-469 VBG denotes according
T6444 470-472 IN denotes to
T6445 473-481 JJ denotes standard
T6446 482-492 NNS denotes procedures
T6447 492-493 . denotes .
T6448 493-549 sentence denotes Amino acid analysis was conducted as described in [21].
T6449 494-499 NN denotes Amino
T6450 500-504 NN denotes acid
T6451 505-513 NN denotes analysis
T6452 518-527 VBN denotes conducted
T6453 514-517 VBD denotes was
T6454 528-530 IN denotes as
T6455 531-540 VBN denotes described
T6456 541-543 IN denotes in
T6457 544-545 -LRB- denotes [
T6458 545-547 CD denotes 21
T6459 547-548 -RRB- denotes ]
T6460 548-549 . denotes .
T6461 549-646 sentence denotes Blood values were analysed using Animal Blood Counter Vet (ABX Diagnostix, Montpellier, France).
T6462 550-555 NN denotes Blood
T6463 556-562 NNS denotes values
T6464 568-576 VBN denotes analysed
T6465 563-567 VBD denotes were
T6466 577-582 VBG denotes using
T6467 583-589 NN denotes Animal
T6468 604-607 NN denotes Vet
T6469 590-595 NN denotes Blood
T6470 596-603 JJ denotes Counter
T6471 608-609 -LRB- denotes (
T6472 613-623 NNP denotes Diagnostix
T6473 609-612 NNP denotes ABX
T6474 623-625 , denotes ,
T6475 625-636 NNP denotes Montpellier
T6476 636-638 , denotes ,
T6477 638-644 NNP denotes France
T6478 644-645 -RRB- denotes )
T6479 645-646 . denotes .
T6480 646-741 sentence denotes Radiographs were taken, and relative bone mineral density was calculated as described in [15].
T6481 647-658 NNS denotes Radiographs
T6482 664-669 VBN denotes taken
T6483 659-663 VBD denotes were
T6484 669-671 , denotes ,
T6485 671-674 CC denotes and
T6486 675-683 JJ denotes relative
T6487 697-704 NN denotes density
T6488 684-688 NN denotes bone
T6489 689-696 NN denotes mineral
T6490 709-719 VBN denotes calculated
T6491 705-708 VBD denotes was
T6492 720-722 IN denotes as
T6493 723-732 VBN denotes described
T6494 733-735 IN denotes in
T6495 736-737 -LRB- denotes [
T6496 737-739 CD denotes 15
T6497 739-740 -RRB- denotes ]
T6498 740-741 . denotes .
T6499 741-832 sentence denotes Mice used in this study were in a 129Ola/C57BL6 mixed background unless noted differently.
T6500 742-746 NNS denotes Mice
T6501 766-770 VBD denotes were
T6502 747-751 VBN denotes used
T6503 752-754 IN denotes in
T6504 755-759 DT denotes this
T6505 760-765 NN denotes study
T6506 771-773 IN denotes in
T6507 774-775 DT denotes a
T6508 796-806 NN denotes background
T6509 776-782 NN denotes 129Ola
T6510 783-789 NN denotes C57BL6
T6511 782-783 HYPH denotes /
T6512 790-795 JJ denotes mixed
T6513 807-813 IN denotes unless
T6514 814-819 VBN denotes noted
T6515 820-831 RB denotes differently
T6516 831-832 . denotes .
T6517 832-1059 sentence denotes All experiments involving mice were judged and approved by the national committee for genetic identification of organisms and the animal ethical committee, and were conducted according to national and international guidelines.
T6518 833-836 DT denotes All
T6519 837-848 NNS denotes experiments
T6520 869-875 VBN denotes judged
T6521 849-858 VBG denotes involving
T6522 859-863 NNS denotes mice
T6523 864-868 VBD denotes were
T6524 876-879 CC denotes and
T6525 880-888 VBN denotes approved
T6526 889-891 IN denotes by
T6527 892-895 DT denotes the
T6528 905-914 NN denotes committee
T6529 896-904 JJ denotes national
T6530 915-918 IN denotes for
T6531 919-926 JJ denotes genetic
T6532 927-941 NN denotes identification
T6533 942-944 IN denotes of
T6534 945-954 NNS denotes organisms
T6535 955-958 CC denotes and
T6536 959-962 DT denotes the
T6537 978-987 NN denotes committee
T6538 963-969 NN denotes animal
T6539 970-977 JJ denotes ethical
T6540 987-989 , denotes ,
T6541 989-992 CC denotes and
T6542 993-997 VBD denotes were
T6543 998-1007 VBN denotes conducted
T6544 1008-1017 VBG denotes according
T6545 1018-1020 IN denotes to
T6546 1021-1029 JJ denotes national
T6547 1048-1058 NNS denotes guidelines
T6548 1030-1033 CC denotes and
T6549 1034-1047 JJ denotes international
T6550 1058-1059 . denotes .
R4335 T6365 T6364 cc and,Derivation
R4336 T6366 T6364 conj analysis,Derivation
R4337 T6367 T6364 prep of,Derivation
R4338 T6368 T6369 amod mutant,mice
R4339 T6369 T6367 pobj mice,of
R4340 T6370 T6364 punct .,Derivation
R4341 T6372 T6373 nsubjpass Generation,described
R4342 T6374 T6372 prep of,Generation
R4343 T6375 T6376 nmod XpdTTD,mice
R4344 T6376 T6374 pobj mice,of
R4345 T6377 T6378 punct (,XPDR722W
R4346 T6378 T6375 parataxis XPDR722W,XpdTTD
R4347 T6379 T6378 punct ),XPDR722W
R4348 T6380 T6375 cc and,XpdTTD
R4349 T6381 T6382 compound XpdTTD,KO
R4350 T6382 T6375 conj KO,XpdTTD
R4351 T6383 T6382 punct /,KO
R4352 T6384 T6373 aux has,described
R4353 T6385 T6373 auxpass been,described
R4354 T6386 T6373 advmod previously,described
R4355 T6387 T6388 punct [,22
R4356 T6388 T6373 parataxis 22,described
R4357 T6389 T6388 nummod 21,22
R4358 T6390 T6388 punct ",",22
R4359 T6391 T6388 punct ],22
R4360 T6392 T6373 punct .,described
R4361 T6394 T6395 det A,description
R4362 T6395 T6397 nsubjpass description,provided
R4363 T6396 T6395 amod detailed,description
R4364 T6398 T6395 prep of,description
R4365 T6399 T6400 det the,generation
R4366 T6400 T6398 pobj generation,of
R4367 T6401 T6400 prep of,generation
R4368 T6402 T6403 amod targeting,constructs
R4369 T6403 T6401 pobj constructs,of
R4370 T6404 T6403 prep for,constructs
R4371 T6405 T6406 nmod Xpd†XPCS,alleles
R4372 T6406 T6404 pobj alleles,for
R4373 T6407 T6405 cc and,Xpd†XPCS
R4374 T6408 T6405 conj Xpd †XP,Xpd†XPCS
R4375 T6409 T6406 acl carrying,alleles
R4376 T6410 T6409 dobj mutations,carrying
R4377 T6411 T6410 acl encoding,mutations
R4378 T6412 T6413 det the,alterations
R4379 T6413 T6411 dobj alterations,encoding
R4380 T6414 T6413 nmod G602D,alterations
R4381 T6415 T6414 cc and,G602D
R4382 T6416 T6414 conj R683W,G602D
R4383 T6417 T6397 aux will,provided
R4384 T6418 T6397 auxpass be,provided
R4385 T6419 T6397 prep upon,provided
R4386 T6420 T6419 pobj request,upon
R4387 T6421 T6397 punct .,provided
R4388 T6423 T6424 amod Chimeric,fibroblasts
R4389 T6424 T6429 nsubjpass fibroblasts,generated
R4390 T6425 T6424 nmod mice,fibroblasts
R4391 T6426 T6425 cc and,mice
R4392 T6427 T6428 npadvmod mouse,embryonic
R4393 T6428 T6425 conj embryonic,mice
R4394 T6430 T6429 auxpass were,generated
R4395 T6431 T6429 prep according,generated
R4396 T6432 T6431 prep to,according
R4397 T6433 T6434 amod standard,procedures
R4398 T6434 T6432 pobj procedures,to
R4399 T6435 T6429 punct .,generated
R4400 T6437 T6438 nmod Haematoxylin,staining
R4401 T6438 T6441 nsubjpass staining,performed
R4402 T6439 T6437 cc and,Haematoxylin
R4403 T6440 T6437 conj eosin,Haematoxylin
R4404 T6442 T6441 auxpass was,performed
R4405 T6443 T6441 prep according,performed
R4406 T6444 T6443 prep to,according
R4407 T6445 T6446 amod standard,procedures
R4408 T6446 T6444 pobj procedures,to
R4409 T6447 T6441 punct .,performed
R4410 T6449 T6450 compound Amino,acid
R4411 T6450 T6451 compound acid,analysis
R4412 T6451 T6452 nsubjpass analysis,conducted
R4413 T6453 T6452 auxpass was,conducted
R4414 T6454 T6455 mark as,described
R4415 T6455 T6452 advcl described,conducted
R4416 T6456 T6455 prep in,described
R4417 T6457 T6456 punct [,in
R4418 T6458 T6456 pobj 21,in
R4419 T6459 T6452 punct ],conducted
R4420 T6460 T6452 punct .,conducted
R4421 T6462 T6463 compound Blood,values
R4422 T6463 T6464 nsubjpass values,analysed
R4423 T6465 T6464 auxpass were,analysed
R4424 T6466 T6464 advcl using,analysed
R4425 T6467 T6468 nmod Animal,Vet
R4426 T6468 T6466 dobj Vet,using
R4427 T6469 T6468 nmod Blood,Vet
R4428 T6470 T6468 amod Counter,Vet
R4429 T6471 T6472 punct (,Diagnostix
R4430 T6472 T6468 parataxis Diagnostix,Vet
R4431 T6473 T6472 compound ABX,Diagnostix
R4432 T6474 T6472 punct ", ",Diagnostix
R4433 T6475 T6472 npadvmod Montpellier,Diagnostix
R4434 T6476 T6472 punct ", ",Diagnostix
R4435 T6477 T6472 npadvmod France,Diagnostix
R4436 T6478 T6472 punct ),Diagnostix
R4437 T6479 T6464 punct .,analysed
R4438 T6481 T6482 nsubjpass Radiographs,taken
R4439 T6483 T6482 auxpass were,taken
R4440 T6484 T6482 punct ", ",taken
R4441 T6485 T6482 cc and,taken
R4442 T6486 T6487 amod relative,density
R4443 T6487 T6490 nsubjpass density,calculated
R4444 T6488 T6489 compound bone,mineral
R4445 T6489 T6487 compound mineral,density
R4446 T6490 T6482 conj calculated,taken
R4447 T6491 T6490 auxpass was,calculated
R4448 T6492 T6493 mark as,described
R4449 T6493 T6490 advcl described,calculated
R4450 T6494 T6493 prep in,described
R4451 T6495 T6494 punct [,in
R4452 T6496 T6494 pobj 15,in
R4453 T6497 T6490 punct ],calculated
R4454 T6498 T6490 punct .,calculated
R4455 T6500 T6501 nsubj Mice,were
R4456 T6502 T6500 acl used,Mice
R4457 T6503 T6502 prep in,used
R4458 T6504 T6505 det this,study
R4459 T6505 T6503 pobj study,in
R4460 T6506 T6501 prep in,were
R4461 T6507 T6508 det a,background
R4462 T6508 T6506 pobj background,in
R4463 T6509 T6510 nmod 129Ola,C57BL6
R4464 T6510 T6508 nmod C57BL6,background
R4465 T6511 T6510 punct /,C57BL6
R4466 T6512 T6508 amod mixed,background
R4467 T6513 T6514 mark unless,noted
R4468 T6514 T6501 advcl noted,were
R4469 T6515 T6514 advmod differently,noted
R4470 T6516 T6501 punct .,were
R4471 T6518 T6519 det All,experiments
R4472 T6519 T6520 nsubjpass experiments,judged
R4473 T6521 T6519 acl involving,experiments
R4474 T6522 T6521 dobj mice,involving
R4475 T6523 T6520 auxpass were,judged
R4476 T6524 T6520 cc and,judged
R4477 T6525 T6520 conj approved,judged
R4478 T6526 T6525 agent by,approved
R4479 T6527 T6528 det the,committee
R4480 T6528 T6526 pobj committee,by
R4481 T6529 T6528 amod national,committee
R4482 T6530 T6528 prep for,committee
R4483 T6531 T6532 amod genetic,identification
R4484 T6532 T6530 pobj identification,for
R4485 T6533 T6532 prep of,identification
R4486 T6534 T6533 pobj organisms,of
R4487 T6535 T6528 cc and,committee
R4488 T6536 T6537 det the,committee
R4489 T6537 T6528 conj committee,committee
R4490 T6538 T6537 nmod animal,committee
R4491 T6539 T6537 amod ethical,committee
R4492 T6540 T6520 punct ", ",judged
R4493 T6541 T6520 cc and,judged
R4494 T6542 T6543 auxpass were,conducted
R4495 T6543 T6520 conj conducted,judged
R4496 T6544 T6543 prep according,conducted
R4497 T6545 T6544 prep to,according
R4498 T6546 T6547 amod national,guidelines
R4499 T6547 T6545 pobj guidelines,to
R4500 T6548 T6546 cc and,national
R4501 T6549 T6546 conj international,national
R4502 T6550 T6520 punct .,judged

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6321 337-342 NCBITaxon:10088 denotes mouse
T6322 343-352 UBERON:0000922 denotes embryonic
T6323 353-364 CL:0000057 denotes fibroblasts
T6324 414-426 CHEBI:51686 denotes Haematoxylin
T6325 550-555 UBERON:0000178 denotes Blood
T6326 583-589 NCBITaxon:33208 denotes Animal
T6327 590-595 UBERON:0000178 denotes Blood
T6328 689-696 CHEBI:46662 denotes mineral
T6329 742-746 NCBITaxon:10088 denotes Mice
T6330 859-863 NCBITaxon:10088 denotes mice
T6331 919-926 SO:0000704 denotes genetic
T6332 945-954 NCBITaxon:1 denotes organisms
T6333 963-969 NCBITaxon:33208 denotes animal
T6312 34-38 NCBITaxon:10088 denotes mice
T6313 54-57 PR:000007164 denotes Xpd
T6314 62-65 PR:000007164 denotes XPD
T6315 76-79 PR:000007164 denotes Xpd
T6316 86-90 NCBITaxon:10088 denotes mice
T6317 199-202 PR:000007164 denotes Xpd
T6318 212-215 PR:000007164 denotes Xpd
T6319 220-227 SO:0001023 denotes alleles
T6320 328-332 NCBITaxon:10088 denotes mice

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6342 212-215 PR_EXT:000007164 denotes Xpd
T6343 220-227 SO_EXT:0001023 denotes alleles
T6344 237-246 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T6345 247-255 SO_EXT:sequence_coding_function denotes encoding
T6346 276-287 SO_EXT:sequence_alteration_entity_or_process denotes alterations
T6347 328-332 NCBITaxon:10088 denotes mice
T6348 337-342 NCBITaxon:10088 denotes mouse
T6349 343-352 UBERON:0000922 denotes embryonic
T6350 353-364 CL:0000057 denotes fibroblasts
T6351 414-426 CHEBI:51686 denotes Haematoxylin
T6352 431-436 CHEBI_EXT:eosin denotes eosin
T6353 494-504 CHEBI_SO_EXT:amino_acid denotes Amino acid
T6354 550-555 UBERON:0000178 denotes Blood
T6355 583-589 NCBITaxon:33208 denotes Animal
T6356 590-595 UBERON:0000178 denotes Blood
T6357 684-688 UBERON_EXT:bone_element_or_tissue denotes bone
T6358 689-696 CHEBI:46662 denotes mineral
T6359 742-746 NCBITaxon:10088 denotes Mice
T6360 859-863 NCBITaxon:10088 denotes mice
T6361 919-926 SO_EXT:0000704 denotes genetic
T6362 945-954 NCBITaxon:1 denotes organisms
T6363 963-969 NCBITaxon:33208 denotes animal
T6334 27-33 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T6335 34-38 NCBITaxon:10088 denotes mice
T6336 54-57 PR_EXT:000007164 denotes Xpd
T6337 62-65 PR_EXT:000007164 denotes XPD
T6338 76-79 PR_EXT:000007164 denotes Xpd
T6339 86-90 NCBITaxon:10088 denotes mice
T6340 184-194 SO_EXT:engineered_biological_sequence denotes constructs
T6341 199-202 PR_EXT:000007164 denotes Xpd

2_test

Id Subject Object Predicate Lexical cue
17020410-9651581-84795165 122-124 9651581 denotes 21
17020410-9426063-84795166 125-127 9426063 denotes 22
17020410-9651581-84795167 545-547 9651581 denotes 21
17020410-11950998-84795168 737-739 11950998 denotes 15
T86762 122-124 9651581 denotes 21
T68945 125-127 9426063 denotes 22
T30574 545-547 9651581 denotes 21
T65613 737-739 11950998 denotes 15