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PMC:1584416 / 28410-29566 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5295 0-12 JJ denotes Interallelic
T5296 13-28 NN denotes Complementation
T5297 29-32 CC denotes and
T5298 33-36 NN denotes XPD
T5299 37-45 NN denotes Function
T5300 45-129 sentence denotes What does interallelic complementation tell us about the mechanism of XPD function?
T5301 46-50 WP denotes What
T5302 85-89 VB denotes tell
T5303 51-55 VBZ denotes does
T5304 56-68 JJ denotes interallelic
T5305 69-84 NN denotes complementation
T5306 90-92 PRP denotes us
T5307 93-98 IN denotes about
T5308 99-102 DT denotes the
T5309 103-112 NN denotes mechanism
T5310 113-115 IN denotes of
T5311 116-119 NN denotes XPD
T5312 120-128 NN denotes function
T5313 128-129 . denotes ?
T5314 129-238 sentence denotes Interallelic complementation is most often observed in multimeric proteins with multiple functional domains.
T5315 130-142 JJ denotes Interallelic
T5316 143-158 NN denotes complementation
T5317 173-181 VBN denotes observed
T5318 159-161 VBZ denotes is
T5319 162-166 RBS denotes most
T5320 167-172 RB denotes often
T5321 182-184 IN denotes in
T5322 185-195 JJ denotes multimeric
T5323 196-204 NN denotes proteins
T5324 205-209 IN denotes with
T5325 210-218 JJ denotes multiple
T5326 230-237 NNS denotes domains
T5327 219-229 JJ denotes functional
T5328 237-238 . denotes .
T5329 238-457 sentence denotes Unfortunately, the structure–function relationship between disease-causing mutations and XPD functional domains, including detailed structural information on XPD or even its stoichiometry within TFIIH, remains unknown.
T5330 239-252 RB denotes Unfortunately
T5331 441-448 VBZ denotes remains
T5332 252-254 , denotes ,
T5333 254-257 DT denotes the
T5334 277-289 NN denotes relationship
T5335 258-267 NN denotes structure
T5336 268-276 NN denotes function
T5337 267-268 HYPH denotes –
T5338 290-297 IN denotes between
T5339 298-305 NN denotes disease
T5340 306-313 VBG denotes causing
T5341 305-306 HYPH denotes -
T5342 314-323 NNS denotes mutations
T5343 324-327 CC denotes and
T5344 328-331 NN denotes XPD
T5345 343-350 NNS denotes domains
T5346 332-342 JJ denotes functional
T5347 350-352 , denotes ,
T5348 352-361 VBG denotes including
T5349 362-370 JJ denotes detailed
T5350 382-393 NN denotes information
T5351 371-381 JJ denotes structural
T5352 394-396 IN denotes on
T5353 397-400 NN denotes XPD
T5354 401-403 CC denotes or
T5355 404-408 RB denotes even
T5356 413-426 NN denotes stoichiometry
T5357 409-412 PRP$ denotes its
T5358 427-433 IN denotes within
T5359 434-439 NN denotes TFIIH
T5360 439-441 , denotes ,
T5361 449-456 JJ denotes unknown
T5362 456-457 . denotes .
T5363 457-726 sentence denotes However, based on the ability of cell extracts that are defective in two different TFIIH components (XPD and XPB) to complement NER activity in vitro [26], it is likely that TFIIH (or its components) can either multimerise or exchange at least during the NER reaction.
T5364 458-465 RB denotes However
T5365 617-619 VBZ denotes is
T5366 465-467 , denotes ,
T5367 467-472 VBN denotes based
T5368 473-475 IN denotes on
T5369 476-479 DT denotes the
T5370 480-487 NN denotes ability
T5371 488-490 IN denotes of
T5372 491-495 NN denotes cell
T5373 496-504 NNS denotes extracts
T5374 505-509 WDT denotes that
T5375 510-513 VBP denotes are
T5376 514-523 JJ denotes defective
T5377 524-526 IN denotes in
T5378 527-530 CD denotes two
T5379 547-557 NNS denotes components
T5380 531-540 JJ denotes different
T5381 541-546 NN denotes TFIIH
T5382 558-559 -LRB- denotes (
T5383 559-562 NN denotes XPD
T5384 563-566 CC denotes and
T5385 567-570 NN denotes XPB
T5386 570-571 -RRB- denotes )
T5387 572-574 TO denotes to
T5388 575-585 VB denotes complement
T5389 586-589 NN denotes NER
T5390 590-598 NN denotes activity
T5391 599-601 FW denotes in
T5392 602-607 FW denotes vitro
T5393 608-609 -LRB- denotes [
T5394 609-611 CD denotes 26
T5395 611-612 -RRB- denotes ]
T5396 612-614 , denotes ,
T5397 614-616 PRP denotes it
T5398 620-626 JJ denotes likely
T5399 627-631 IN denotes that
T5400 669-680 VB denotes multimerise
T5401 632-637 NN denotes TFIIH
T5402 638-639 -LRB- denotes (
T5403 639-641 CC denotes or
T5404 642-645 PRP$ denotes its
T5405 646-656 NNS denotes components
T5406 656-657 -RRB- denotes )
T5407 658-661 MD denotes can
T5408 662-668 CC denotes either
T5409 681-683 CC denotes or
T5410 684-692 VB denotes exchange
T5411 693-695 RB denotes at
T5412 696-701 RBS denotes least
T5413 702-708 IN denotes during
T5414 709-712 DT denotes the
T5415 717-725 NN denotes reaction
T5416 713-716 NN denotes NER
T5417 725-726 . denotes .
T5418 726-799 sentence denotes Furthermore, XPD is known to be a “loosely bound” subunit of TFIIH [27].
T5419 727-738 RB denotes Furthermore
T5420 747-752 VBN denotes known
T5421 738-740 , denotes ,
T5422 740-743 NN denotes XPD
T5423 744-746 VBZ denotes is
T5424 753-755 TO denotes to
T5425 756-758 VB denotes be
T5426 759-760 DT denotes a
T5427 777-784 NN denotes subunit
T5428 761-762 RB denotes “
T5429 762-769 RB denotes loosely
T5430 770-775 VBN denotes bound
T5431 775-776 '' denotes ”
T5432 785-787 IN denotes of
T5433 788-793 NN denotes TFIIH
T5434 794-795 -LRB- denotes [
T5435 795-797 CD denotes 27
T5436 797-798 -RRB- denotes ]
T5437 798-799 . denotes .
T5438 799-1156 sentence denotes We thus envisage the molecular mechanism of interallelic complementation to involve the exchange of XPD molecules within the TFIIH complex or turnover of TFIIH complexes containing different XPD molecules at the site of DNA damage during the course of the global genome as well as transcription-coupled repair of either UV-induced or endogenous DNA damage.
T5439 800-802 PRP denotes We
T5440 808-816 VBP denotes envisage
T5441 803-807 RB denotes thus
T5442 817-820 DT denotes the
T5443 831-840 NN denotes mechanism
T5444 821-830 JJ denotes molecular
T5445 876-883 VB denotes involve
T5446 841-843 IN denotes of
T5447 844-856 JJ denotes interallelic
T5448 857-872 NN denotes complementation
T5449 873-875 TO denotes to
T5450 884-887 DT denotes the
T5451 888-896 NN denotes exchange
T5452 897-899 IN denotes of
T5453 900-903 NN denotes XPD
T5454 904-913 NNS denotes molecules
T5455 914-920 IN denotes within
T5456 921-924 DT denotes the
T5457 931-938 NN denotes complex
T5458 925-930 NN denotes TFIIH
T5459 939-941 CC denotes or
T5460 942-950 NN denotes turnover
T5461 951-953 IN denotes of
T5462 954-959 NN denotes TFIIH
T5463 960-969 NNS denotes complexes
T5464 970-980 VBG denotes containing
T5465 981-990 JJ denotes different
T5466 995-1004 NNS denotes molecules
T5467 991-994 NN denotes XPD
T5468 1005-1007 IN denotes at
T5469 1008-1011 DT denotes the
T5470 1012-1016 NN denotes site
T5471 1017-1019 IN denotes of
T5472 1020-1023 NN denotes DNA
T5473 1024-1030 NN denotes damage
T5474 1031-1037 IN denotes during
T5475 1038-1041 DT denotes the
T5476 1042-1048 NN denotes course
T5477 1049-1051 IN denotes of
T5478 1052-1055 DT denotes the
T5479 1063-1069 NN denotes genome
T5480 1056-1062 JJ denotes global
T5481 1070-1072 RB denotes as
T5482 1078-1080 IN denotes as
T5483 1073-1077 RB denotes well
T5484 1081-1094 NN denotes transcription
T5485 1095-1102 VBN denotes coupled
T5486 1094-1095 HYPH denotes -
T5487 1103-1109 NN denotes repair
T5488 1110-1112 IN denotes of
T5489 1113-1119 CC denotes either
T5490 1149-1155 NN denotes damage
T5491 1120-1122 NN denotes UV
T5492 1123-1130 VBN denotes induced
T5493 1122-1123 HYPH denotes -
T5494 1131-1133 CC denotes or
T5495 1134-1144 JJ denotes endogenous
T5496 1145-1148 NN denotes DNA
T5497 1155-1156 . denotes .
R3565 T5295 T5296 amod Interallelic,Complementation
R3566 T5297 T5296 cc and,Complementation
R3567 T5298 T5299 compound XPD,Function
R3568 T5299 T5296 conj Function,Complementation
R3569 T5301 T5302 dep What,tell
R3570 T5303 T5302 aux does,tell
R3571 T5304 T5305 amod interallelic,complementation
R3572 T5305 T5302 nsubj complementation,tell
R3573 T5306 T5302 dobj us,tell
R3574 T5307 T5302 prep about,tell
R3575 T5308 T5309 det the,mechanism
R3576 T5309 T5307 pobj mechanism,about
R3577 T5310 T5309 prep of,mechanism
R3578 T5311 T5312 compound XPD,function
R3579 T5312 T5310 pobj function,of
R3580 T5313 T5302 punct ?,tell
R3581 T5315 T5316 amod Interallelic,complementation
R3582 T5316 T5317 nsubjpass complementation,observed
R3583 T5318 T5317 auxpass is,observed
R3584 T5319 T5320 advmod most,often
R3585 T5320 T5317 advmod often,observed
R3586 T5321 T5317 prep in,observed
R3587 T5322 T5323 amod multimeric,proteins
R3588 T5323 T5321 pobj proteins,in
R3589 T5324 T5323 prep with,proteins
R3590 T5325 T5326 amod multiple,domains
R3591 T5326 T5324 pobj domains,with
R3592 T5327 T5326 amod functional,domains
R3593 T5328 T5317 punct .,observed
R3594 T5330 T5331 advmod Unfortunately,remains
R3595 T5332 T5331 punct ", ",remains
R3596 T5333 T5334 det the,relationship
R3597 T5334 T5331 nsubj relationship,remains
R3598 T5335 T5336 compound structure,function
R3599 T5336 T5334 compound function,relationship
R3600 T5337 T5336 punct –,function
R3601 T5338 T5334 prep between,relationship
R3602 T5339 T5340 npadvmod disease,causing
R3603 T5340 T5342 amod causing,mutations
R3604 T5341 T5340 punct -,causing
R3605 T5342 T5338 pobj mutations,between
R3606 T5343 T5342 cc and,mutations
R3607 T5344 T5345 nmod XPD,domains
R3608 T5345 T5342 conj domains,mutations
R3609 T5346 T5345 amod functional,domains
R3610 T5347 T5334 punct ", ",relationship
R3611 T5348 T5334 prep including,relationship
R3612 T5349 T5350 amod detailed,information
R3613 T5350 T5348 pobj information,including
R3614 T5351 T5350 amod structural,information
R3615 T5352 T5350 prep on,information
R3616 T5353 T5352 pobj XPD,on
R3617 T5354 T5353 cc or,XPD
R3618 T5355 T5356 advmod even,stoichiometry
R3619 T5356 T5353 conj stoichiometry,XPD
R3620 T5357 T5356 poss its,stoichiometry
R3621 T5358 T5350 prep within,information
R3622 T5359 T5358 pobj TFIIH,within
R3623 T5360 T5331 punct ", ",remains
R3624 T5361 T5331 acomp unknown,remains
R3625 T5362 T5331 punct .,remains
R3626 T5364 T5365 advmod However,is
R3627 T5366 T5365 punct ", ",is
R3628 T5367 T5365 prep based,is
R3629 T5368 T5367 prep on,based
R3630 T5369 T5370 det the,ability
R3631 T5370 T5368 pobj ability,on
R3632 T5371 T5370 prep of,ability
R3633 T5372 T5373 compound cell,extracts
R3634 T5373 T5371 pobj extracts,of
R3635 T5374 T5375 dep that,are
R3636 T5375 T5373 relcl are,extracts
R3637 T5376 T5375 acomp defective,are
R3638 T5377 T5376 prep in,defective
R3639 T5378 T5379 nummod two,components
R3640 T5379 T5377 pobj components,in
R3641 T5380 T5379 amod different,components
R3642 T5381 T5379 compound TFIIH,components
R3643 T5382 T5379 punct (,components
R3644 T5383 T5379 appos XPD,components
R3645 T5384 T5383 cc and,XPD
R3646 T5385 T5383 conj XPB,XPD
R3647 T5386 T5370 punct ),ability
R3648 T5387 T5388 aux to,complement
R3649 T5388 T5370 acl complement,ability
R3650 T5389 T5390 compound NER,activity
R3651 T5390 T5388 dobj activity,complement
R3652 T5391 T5392 advmod in,vitro
R3653 T5392 T5388 advmod vitro,complement
R3654 T5393 T5394 punct [,26
R3655 T5394 T5370 parataxis 26,ability
R3656 T5395 T5394 punct ],26
R3657 T5396 T5365 punct ", ",is
R3658 T5397 T5365 nsubj it,is
R3659 T5398 T5365 acomp likely,is
R3660 T5399 T5400 mark that,multimerise
R3661 T5400 T5365 ccomp multimerise,is
R3662 T5401 T5400 nsubj TFIIH,multimerise
R3663 T5402 T5401 punct (,TFIIH
R3664 T5403 T5401 cc or,TFIIH
R3665 T5404 T5405 poss its,components
R3666 T5405 T5401 conj components,TFIIH
R3667 T5406 T5400 punct ),multimerise
R3668 T5407 T5400 aux can,multimerise
R3669 T5408 T5400 preconj either,multimerise
R3670 T5409 T5400 cc or,multimerise
R3671 T5410 T5400 conj exchange,multimerise
R3672 T5411 T5412 advmod at,least
R3673 T5412 T5413 advmod least,during
R3674 T5413 T5410 prep during,exchange
R3675 T5414 T5415 det the,reaction
R3676 T5415 T5413 pobj reaction,during
R3677 T5416 T5415 compound NER,reaction
R3678 T5417 T5365 punct .,is
R3679 T5419 T5420 advmod Furthermore,known
R3680 T5421 T5420 punct ", ",known
R3681 T5422 T5420 nsubjpass XPD,known
R3682 T5423 T5420 auxpass is,known
R3683 T5424 T5425 aux to,be
R3684 T5425 T5420 xcomp be,known
R3685 T5426 T5427 det a,subunit
R3686 T5427 T5425 attr subunit,be
R3687 T5428 T5427 advmod “,subunit
R3688 T5429 T5430 advmod loosely,bound
R3689 T5430 T5427 amod bound,subunit
R3690 T5431 T5427 punct ”,subunit
R3691 T5432 T5427 prep of,subunit
R3692 T5433 T5432 pobj TFIIH,of
R3693 T5434 T5435 punct [,27
R3694 T5435 T5420 parataxis 27,known
R3695 T5436 T5435 punct ],27
R3696 T5437 T5420 punct .,known
R3697 T5439 T5440 nsubj We,envisage
R3698 T5441 T5440 advmod thus,envisage
R3699 T5442 T5443 det the,mechanism
R3700 T5443 T5445 nsubj mechanism,involve
R3701 T5444 T5443 amod molecular,mechanism
R3702 T5445 T5440 ccomp involve,envisage
R3703 T5446 T5443 prep of,mechanism
R3704 T5447 T5448 amod interallelic,complementation
R3705 T5448 T5446 pobj complementation,of
R3706 T5449 T5445 aux to,involve
R3707 T5450 T5451 det the,exchange
R3708 T5451 T5445 dobj exchange,involve
R3709 T5452 T5451 prep of,exchange
R3710 T5453 T5454 compound XPD,molecules
R3711 T5454 T5452 pobj molecules,of
R3712 T5455 T5451 prep within,exchange
R3713 T5456 T5457 det the,complex
R3714 T5457 T5455 pobj complex,within
R3715 T5458 T5457 compound TFIIH,complex
R3716 T5459 T5451 cc or,exchange
R3717 T5460 T5451 conj turnover,exchange
R3718 T5461 T5460 prep of,turnover
R3719 T5462 T5463 compound TFIIH,complexes
R3720 T5463 T5461 pobj complexes,of
R3721 T5464 T5463 acl containing,complexes
R3722 T5465 T5466 amod different,molecules
R3723 T5466 T5464 dobj molecules,containing
R3724 T5467 T5466 compound XPD,molecules
R3725 T5468 T5460 prep at,turnover
R3726 T5469 T5470 det the,site
R3727 T5470 T5468 pobj site,at
R3728 T5471 T5470 prep of,site
R3729 T5472 T5473 compound DNA,damage
R3730 T5473 T5471 pobj damage,of
R3731 T5474 T5460 prep during,turnover
R3732 T5475 T5476 det the,course
R3733 T5476 T5474 pobj course,during
R3734 T5477 T5476 prep of,course
R3735 T5478 T5479 det the,genome
R3736 T5479 T5477 pobj genome,of
R3737 T5480 T5479 amod global,genome
R3738 T5481 T5482 advmod as,as
R3739 T5482 T5451 cc as,exchange
R3740 T5483 T5482 advmod well,as
R3741 T5484 T5485 npadvmod transcription,coupled
R3742 T5485 T5487 amod coupled,repair
R3743 T5486 T5485 punct -,coupled
R3744 T5487 T5451 conj repair,exchange
R3745 T5488 T5487 prep of,repair
R3746 T5489 T5490 preconj either,damage
R3747 T5490 T5488 pobj damage,of
R3748 T5491 T5492 npadvmod UV,induced
R3749 T5492 T5490 amod induced,damage
R3750 T5493 T5492 punct -,induced
R3751 T5494 T5492 cc or,induced
R3752 T5495 T5492 conj endogenous,induced
R3753 T5496 T5490 compound DNA,damage
R3754 T5497 T5440 punct .,envisage

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5230 5-12 SO:0001023 denotes allelic
T5231 33-36 PR:000007164 denotes XPD
T5232 61-68 SO:0001023 denotes allelic
T5233 116-119 PR:000007164 denotes XPD
T5234 135-142 SO:0001023 denotes allelic
T5235 185-195 GO:0032991 denotes multimeric
T5236 230-237 SO:0000417 denotes domains
T5237 328-331 PR:000007164 denotes XPD
T5238 343-350 SO:0000417 denotes domains
T5239 397-400 PR:000007164 denotes XPD
T5240 434-439 GO:0005675 denotes TFIIH
T5241 541-546 GO:0005675 denotes TFIIH
T5242 559-562 PR:000007164 denotes XPD
T5243 567-570 PR:000007165 denotes XPB
T5244 586-589 GO:0006289 denotes NER
T5245 632-637 GO:0005675 denotes TFIIH
T5246 713-716 GO:0006289 denotes NER
T5247 740-743 PR:000007164 denotes XPD
T5248 788-793 GO:0005675 denotes TFIIH
T5249 849-856 SO:0001023 denotes allelic
T5250 900-903 PR:000007164 denotes XPD
T5251 904-913 CHEBI:36357 denotes molecules
T5252 925-938 GO:0005675 denotes TFIIH complex
T5253 954-969 GO:0005675 denotes TFIIH complexes
T5254 991-994 PR:000007164 denotes XPD
T5255 995-1004 CHEBI:36357 denotes molecules
T5256 1063-1069 SO:0001026 denotes genome
T5257 1081-1112 _FRAGMENT denotes transcription-coupled repair of
T5258 1145-1155 GO:0006283 denotes DNA damage
R3563 T5258 T5257 _lexicallyChainedTo DNA damage,transcription-coupled repair of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5259 5-12 SO_EXT:0001023 denotes allelic
T5260 33-36 PR_EXT:000007164 denotes XPD
T5261 61-68 SO_EXT:0001023 denotes allelic
T5262 116-119 PR_EXT:000007164 denotes XPD
T5263 135-142 SO_EXT:0001023 denotes allelic
T5264 185-195 GO:0032991 denotes multimeric
T5265 196-204 CHEBI_PR_EXT:protein denotes proteins
T5266 230-237 SO_EXT:0000417 denotes domains
T5267 314-323 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T5268 328-331 PR_EXT:000007164 denotes XPD
T5269 343-350 SO_EXT:0000417 denotes domains
T5270 397-400 PR_EXT:000007164 denotes XPD
T5271 434-439 GO:0005675 denotes TFIIH
T5272 491-495 CL_GO_EXT:cell denotes cell
T5273 541-546 GO:0005675 denotes TFIIH
T5274 559-562 PR_EXT:000007164 denotes XPD
T5275 567-570 PR_EXT:000007165 denotes XPB
T5276 586-589 GO:0006289 denotes NER
T5277 632-637 GO:0005675 denotes TFIIH
T5278 713-716 GO:0006289 denotes NER
T5279 740-743 PR_EXT:000007164 denotes XPD
T5280 770-775 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T5281 788-793 GO:0005675 denotes TFIIH
T5282 821-830 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T5283 849-856 SO_EXT:0001023 denotes allelic
T5284 900-903 PR_EXT:000007164 denotes XPD
T5285 904-913 CHEBI:36357 denotes molecules
T5286 925-938 GO:0005675 denotes TFIIH complex
T5287 954-969 GO:0005675 denotes TFIIH complexes
T5288 991-994 PR_EXT:000007164 denotes XPD
T5289 995-1004 CHEBI:36357 denotes molecules
T5290 1020-1023 CHEBI_SO_EXT:DNA denotes DNA
T5291 1063-1069 SO_EXT:0001026 denotes genome
T5292 1081-1112 _FRAGMENT denotes transcription-coupled repair of
T5293 1145-1155 GO:0006283 denotes DNA damage
T5294 1145-1148 CHEBI_SO_EXT:DNA denotes DNA
R3564 T5293 T5292 _lexicallyChainedTo DNA damage,transcription-coupled repair of

2_test

Id Subject Object Predicate Lexical cue
17020410-8253091-84795157 609-611 8253091 denotes 26
17020410-12820975-84795158 795-797 12820975 denotes 27
T41376 609-611 8253091 denotes 26
T97368 795-797 12820975 denotes 27