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PMC:1584416 / 21235-21865 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8975 0-1 -LRB- denotes (
T8976 1-2 LS denotes E
T8977 23-32 NN denotes reduction
T8978 2-3 -RRB- denotes )
T8979 4-7 NN denotes Xpd
T8980 8-12 NN denotes dose
T8981 13-22 JJ denotes dependent
T8982 12-13 HYPH denotes -
T8983 33-35 IN denotes of
T8984 36-41 NN denotes TFIIH
T8985 42-44 IN denotes in
T8986 45-55 JJ denotes homozygous
T8987 63-66 NN denotes TTD
T8988 56-62 NN denotes XpdTTD
T8989 62-63 HYPH denotes /
T8990 144-149 NNS denotes cells
T8991 66-68 , denotes ,
T8992 68-78 JJ denotes hemizygous
T8993 86-88 NN denotes KO
T8994 79-85 NN denotes XpdTTD
T8995 85-86 HYPH denotes /
T8996 88-90 , denotes ,
T8997 90-93 CC denotes and
T8998 94-102 NN denotes compound
T8999 123-128 NN denotes †XPCS
T9000 103-115 JJ denotes heterozygous
T9001 116-122 NN denotes XpdTTD
T9002 122-123 HYPH denotes /
T9003 129-132 CC denotes and
T9004 133-139 NN denotes XpdTTD
T9005 140-143 NN denotes †XP
T9006 139-140 HYPH denotes /
T9007 150-152 IN denotes by
T9008 153-164 JJ denotes comparative
T9009 165-183 NN denotes immunofluorescence
T9010 184-186 IN denotes of
T9011 187-190 DT denotes the
T9012 195-202 NN denotes subunit
T9013 191-194 NN denotes p62
T9014 203-205 IN denotes of
T9015 206-211 NN denotes TFIIH
T9016 211-212 . denotes .
T9017 212-630 sentence denotes Roman numerals represent different microscopic slides and Arabic numerals different cell lines labelled as follows: (I) wt cells (1) labelled with 2-μm beads, XpdTTD/TTD cells (2) with 0.79-μm beads, and XpdTTD/KO cells (3) with no beads; (II) wt cells (1) labelled with 0.79-μm beads and XpdTTD/†XPCS cells (4) with no beads; and (III) wt cells (1) labelled with 0.79-μm beads and XpdTTD/†XP cells (5) with no beads.
T9018 213-218 JJ denotes Roman
T9019 219-227 NNS denotes numerals
T9020 228-237 VBP denotes represent
T9021 238-247 JJ denotes different
T9022 260-266 NNS denotes slides
T9023 248-259 JJ denotes microscopic
T9024 267-270 CC denotes and
T9025 271-277 JJ denotes Arabic
T9026 278-286 NNS denotes numerals
T9027 302-307 NNS denotes lines
T9028 287-296 JJ denotes different
T9029 297-301 NN denotes cell
T9030 308-316 VBN denotes labelled
T9031 317-319 IN denotes as
T9032 320-327 VBZ denotes follows
T9033 327-329 : denotes :
T9034 329-330 -LRB- denotes (
T9035 330-331 LS denotes I
T9036 336-341 NNS denotes cells
T9037 331-332 -RRB- denotes )
T9038 333-335 NN denotes wt
T9039 342-343 -LRB- denotes (
T9040 343-344 CD denotes 1
T9041 344-345 -RRB- denotes )
T9042 346-354 VBN denotes labelled
T9043 355-359 IN denotes with
T9044 360-361 CD denotes 2
T9045 362-364 NN denotes μm
T9046 361-362 HYPH denotes -
T9047 365-370 NNS denotes beads
T9048 370-372 , denotes ,
T9049 372-378 NN denotes XpdTTD
T9050 379-382 NN denotes TTD
T9051 378-379 HYPH denotes /
T9052 383-388 NNS denotes cells
T9053 389-390 -LRB- denotes (
T9054 390-391 CD denotes 2
T9055 391-392 -RRB- denotes )
T9056 393-397 IN denotes with
T9057 398-402 CD denotes 0.79
T9058 403-405 NN denotes μm
T9059 402-403 HYPH denotes -
T9060 406-411 NNS denotes beads
T9061 411-413 , denotes ,
T9062 413-416 CC denotes and
T9063 417-423 NN denotes XpdTTD
T9064 424-426 NN denotes KO
T9065 423-424 HYPH denotes /
T9066 427-432 NNS denotes cells
T9067 433-434 -LRB- denotes (
T9068 434-435 CD denotes 3
T9069 435-436 -RRB- denotes )
T9070 437-441 IN denotes with
T9071 442-444 DT denotes no
T9072 445-450 NNS denotes beads
T9073 450-451 : denotes ;
T9074 452-453 -LRB- denotes (
T9075 453-455 LS denotes II
T9076 460-465 NNS denotes cells
T9077 455-456 -RRB- denotes )
T9078 457-459 NN denotes wt
T9079 466-467 -LRB- denotes (
T9080 467-468 CD denotes 1
T9081 468-469 -RRB- denotes )
T9082 470-478 VBN denotes labelled
T9083 479-483 IN denotes with
T9084 484-488 CD denotes 0.79
T9085 489-491 NN denotes μm
T9086 488-489 HYPH denotes -
T9087 492-497 NNS denotes beads
T9088 498-501 CC denotes and
T9089 502-508 NN denotes XpdTTD
T9090 509-514 NN denotes †XPCS
T9091 508-509 HYPH denotes /
T9092 515-520 NNS denotes cells
T9093 521-522 -LRB- denotes (
T9094 522-523 CD denotes 4
T9095 523-524 -RRB- denotes )
T9096 525-529 IN denotes with
T9097 530-532 DT denotes no
T9098 533-538 NNS denotes beads
T9099 538-539 : denotes ;
T9100 540-543 CC denotes and
T9101 544-545 -LRB- denotes (
T9102 545-548 LS denotes III
T9103 553-558 NNS denotes cells
T9104 548-549 -RRB- denotes )
T9105 550-552 NN denotes wt
T9106 559-560 -LRB- denotes (
T9107 560-561 CD denotes 1
T9108 561-562 -RRB- denotes )
T9109 563-571 VBN denotes labelled
T9110 572-576 IN denotes with
T9111 577-581 CD denotes 0.79
T9112 582-584 NN denotes μm
T9113 581-582 HYPH denotes -
T9114 585-590 NNS denotes beads
T9115 591-594 CC denotes and
T9116 595-601 NN denotes XpdTTD
T9117 602-605 NN denotes †XP
T9118 601-602 HYPH denotes /
T9119 606-611 NNS denotes cells
T9120 612-613 -LRB- denotes (
T9121 613-614 CD denotes 5
T9122 614-615 -RRB- denotes )
T9123 616-620 IN denotes with
T9124 621-623 DT denotes no
T9125 624-629 NNS denotes beads
T9126 629-630 . denotes .
R6088 T8975 T8976 punct (,E
R6089 T8976 T8977 meta E,reduction
R6090 T8978 T8976 punct ),E
R6091 T8979 T8977 nmod Xpd,reduction
R6092 T8980 T8981 npadvmod dose,dependent
R6093 T8981 T8977 amod dependent,reduction
R6094 T8982 T8981 punct -,dependent
R6095 T8983 T8977 prep of,reduction
R6096 T8984 T8983 pobj TFIIH,of
R6097 T8985 T8977 prep in,reduction
R6098 T8986 T8987 amod homozygous,TTD
R6099 T8987 T8990 nmod TTD,cells
R6100 T8988 T8987 nmod XpdTTD,TTD
R6101 T8989 T8987 punct /,TTD
R6102 T8990 T8985 pobj cells,in
R6103 T8991 T8987 punct ", ",TTD
R6104 T8992 T8993 amod hemizygous,KO
R6105 T8993 T8987 conj KO,TTD
R6106 T8994 T8993 compound XpdTTD,KO
R6107 T8995 T8993 punct /,KO
R6108 T8996 T8993 punct ", ",KO
R6109 T8997 T8993 cc and,KO
R6110 T8998 T8999 nmod compound,†XPCS
R6111 T8999 T8993 conj †XPCS,KO
R6112 T9000 T8999 amod heterozygous,†XPCS
R6113 T9001 T8999 compound XpdTTD,†XPCS
R6114 T9002 T8999 punct /,†XPCS
R6115 T9003 T8999 cc and,†XPCS
R6116 T9004 T9005 compound XpdTTD,†XP
R6117 T9005 T8999 conj †XP,†XPCS
R6118 T9006 T9005 punct /,†XP
R6119 T9007 T8977 prep by,reduction
R6120 T9008 T9009 amod comparative,immunofluorescence
R6121 T9009 T9007 pobj immunofluorescence,by
R6122 T9010 T9009 prep of,immunofluorescence
R6123 T9011 T9012 det the,subunit
R6124 T9012 T9010 pobj subunit,of
R6125 T9013 T9012 compound p62,subunit
R6126 T9014 T9012 prep of,subunit
R6127 T9015 T9014 pobj TFIIH,of
R6128 T9016 T8977 punct .,reduction
R6129 T9018 T9019 amod Roman,numerals
R6130 T9019 T9020 nsubj numerals,represent
R6131 T9021 T9022 amod different,slides
R6132 T9022 T9020 dobj slides,represent
R6133 T9023 T9022 amod microscopic,slides
R6134 T9024 T9020 cc and,represent
R6135 T9025 T9026 amod Arabic,numerals
R6136 T9026 T9027 nsubj numerals,lines
R6137 T9027 T9020 conj lines,represent
R6138 T9028 T9027 amod different,lines
R6139 T9029 T9027 compound cell,lines
R6140 T9030 T9027 acl labelled,lines
R6141 T9031 T9032 mark as,follows
R6142 T9032 T9030 advcl follows,labelled
R6143 T9033 T9027 punct : ,lines
R6144 T9034 T9035 punct (,I
R6145 T9035 T9036 meta I,cells
R6146 T9036 T9027 dep cells,lines
R6147 T9037 T9035 punct ),I
R6148 T9038 T9036 compound wt,cells
R6149 T9039 T9040 punct (,1
R6150 T9040 T9036 parataxis 1,cells
R6151 T9041 T9040 punct ),1
R6152 T9042 T9036 acl labelled,cells
R6153 T9043 T9042 prep with,labelled
R6154 T9044 T9045 nummod 2,μm
R6155 T9045 T9047 compound μm,beads
R6156 T9046 T9045 punct -,μm
R6157 T9047 T9043 pobj beads,with
R6158 T9048 T9036 punct ", ",cells
R6159 T9049 T9050 compound XpdTTD,TTD
R6160 T9050 T9052 compound TTD,cells
R6161 T9051 T9050 punct /,TTD
R6162 T9052 T9036 conj cells,cells
R6163 T9053 T9054 punct (,2
R6164 T9054 T9052 parataxis 2,cells
R6165 T9055 T9054 punct ),2
R6166 T9056 T9052 prep with,cells
R6167 T9057 T9058 nummod 0.79,μm
R6168 T9058 T9060 compound μm,beads
R6169 T9059 T9058 punct -,μm
R6170 T9060 T9056 pobj beads,with
R6171 T9061 T9052 punct ", ",cells
R6172 T9062 T9052 cc and,cells
R6173 T9063 T9064 compound XpdTTD,KO
R6174 T9064 T9066 compound KO,cells
R6175 T9065 T9064 punct /,KO
R6176 T9066 T9052 conj cells,cells
R6177 T9067 T9068 punct (,3
R6178 T9068 T9066 parataxis 3,cells
R6179 T9069 T9068 punct ),3
R6180 T9070 T9066 prep with,cells
R6181 T9071 T9072 det no,beads
R6182 T9072 T9070 pobj beads,with
R6183 T9073 T9036 punct ;,cells
R6184 T9074 T9075 punct (,II
R6185 T9075 T9076 meta II,cells
R6186 T9076 T9036 conj cells,cells
R6187 T9077 T9075 punct ),II
R6188 T9078 T9076 compound wt,cells
R6189 T9079 T9080 punct (,1
R6190 T9080 T9076 parataxis 1,cells
R6191 T9081 T9080 punct ),1
R6192 T9082 T9076 acl labelled,cells
R6193 T9083 T9082 prep with,labelled
R6194 T9084 T9085 nummod 0.79,μm
R6195 T9085 T9087 compound μm,beads
R6196 T9086 T9085 punct -,μm
R6197 T9087 T9083 pobj beads,with
R6198 T9088 T9076 cc and,cells
R6199 T9089 T9090 compound XpdTTD,†XPCS
R6200 T9090 T9092 compound †XPCS,cells
R6201 T9091 T9090 punct /,†XPCS
R6202 T9092 T9076 conj cells,cells
R6203 T9093 T9094 punct (,4
R6204 T9094 T9092 parataxis 4,cells
R6205 T9095 T9094 punct ),4
R6206 T9096 T9092 prep with,cells
R6207 T9097 T9098 det no,beads
R6208 T9098 T9096 pobj beads,with
R6209 T9099 T9076 punct ;,cells
R6210 T9100 T9076 cc and,cells
R6211 T9101 T9102 punct (,III
R6212 T9102 T9103 meta III,cells
R6213 T9103 T9076 conj cells,cells
R6214 T9104 T9102 punct ),III
R6215 T9105 T9103 compound wt,cells
R6216 T9106 T9107 punct (,1
R6217 T9107 T9103 parataxis 1,cells
R6218 T9108 T9107 punct ),1
R6219 T9109 T9103 acl labelled,cells
R6220 T9110 T9109 prep with,labelled
R6221 T9111 T9112 nummod 0.79,μm
R6222 T9112 T9114 compound μm,beads
R6223 T9113 T9112 punct -,μm
R6224 T9114 T9110 pobj beads,with
R6225 T9115 T9103 cc and,cells
R6226 T9116 T9117 compound XpdTTD,†XP
R6227 T9117 T9119 compound †XP,cells
R6228 T9118 T9117 punct /,†XP
R6229 T9119 T9103 conj cells,cells
R6230 T9120 T9121 punct (,5
R6231 T9121 T9119 parataxis 5,cells
R6232 T9122 T9121 punct ),5
R6233 T9123 T9119 prep with,cells
R6234 T9124 T9125 det no,beads
R6235 T9125 T9123 pobj beads,with
R6236 T9126 T9027 punct .,lines

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8450 4-7 PR:000007164 denotes Xpd
T8451 36-41 GO:0005675 denotes TFIIH
T8452 56-59 PR:000007164 denotes Xpd
T8453 79-82 PR:000007164 denotes Xpd
T8454 116-119 PR:000007164 denotes Xpd
T8455 133-136 PR:000007164 denotes Xpd
T8456 191-211 PR:000008317 denotes p62 subunit of TFIIH
T8457 206-211 GO:0005675 denotes TFIIH
T8458 372-375 PR:000007164 denotes Xpd
T8459 417-420 PR:000007164 denotes Xpd
T8460 502-505 PR:000007164 denotes Xpd
T8461 595-598 PR:000007164 denotes Xpd

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8529 4-7 PR_EXT:000007164 denotes Xpd
T8530 36-41 GO:0005675 denotes TFIIH
T8531 56-59 PR_EXT:000007164 denotes Xpd
T8532 79-82 PR_EXT:000007164 denotes Xpd
T8533 116-119 PR_EXT:000007164 denotes Xpd
T8534 133-136 PR_EXT:000007164 denotes Xpd
T8535 144-149 CL_GO_EXT:cell denotes cells
T8536 191-211 PR_EXT:000008317 denotes p62 subunit of TFIIH
T8537 206-211 GO:0005675 denotes TFIIH
T8538 297-301 CL_GO_EXT:cell denotes cell
T8539 308-316 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8540 333-335 SO_EXT:wild_type_entity_or_quality denotes wt
T8541 336-341 CL_GO_EXT:cell denotes cells
T8542 346-354 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8543 372-375 PR_EXT:000007164 denotes Xpd
T8544 383-388 CL_GO_EXT:cell denotes cells
T8545 417-420 PR_EXT:000007164 denotes Xpd
T8546 427-432 CL_GO_EXT:cell denotes cells
T8547 457-459 SO_EXT:wild_type_entity_or_quality denotes wt
T8548 460-465 CL_GO_EXT:cell denotes cells
T8549 470-478 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8550 502-505 PR_EXT:000007164 denotes Xpd
T8551 515-520 CL_GO_EXT:cell denotes cells
T8552 550-552 SO_EXT:wild_type_entity_or_quality denotes wt
T8553 553-558 CL_GO_EXT:cell denotes cells
T8554 563-571 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T8555 595-598 PR_EXT:000007164 denotes Xpd
T8556 606-611 CL_GO_EXT:cell denotes cells