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PMC:1564426 / 20242-20927 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9575 1-4 PR_EXT:000004122 denotes Apc
T9576 5-16 SO_EXT:0000673 denotes transcripts
T9577 39-41 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T9578 51-58 SO_EXT:0000112 denotes primers
T9579 68-72 SO_EXT:0000147 denotes exon
T9580 100-103 CHEBI_SO_EXT:RNA denotes RNA
T9581 136-142 UBERON:0000479 denotes tissue
T9582 177-179 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T9583 180-191 SO_EXT:0000006 denotes PCR product
T9584 197-199 SO_EXT:0000028 denotes bp
T9585 210-219 SO_EXT:sequence_truncation_process denotes truncated
T9586 220-223 PR_EXT:000004122 denotes Apc
T9587 225-228 PR_EXT:000004122 denotes Apc
T9588 234-240 SO_EXT:0001023 denotes allele
T9589 253-260 UBERON:0000479 denotes tissues
T9590 271-282 GO_EXT:recombinase denotes recombinase
T9591 298-307 GO:0010467 denotes expressed
T9592 315-318 PR_EXT:000009454 denotes K14
T9593 332-336 NCBITaxon:10088 denotes mice
T9594 391-394 PR_EXT:000009454 denotes K14
T9595 408-413 NCBITaxon:10088 denotes mouse
T9596 414-421 UBERON:0000479 denotes tissues
T9597 437-442 UBERON:0002107 denotes liver
T9598 446-449 PR_EXT:000009454 denotes K14
T9599 463-467 NCBITaxon:10088 denotes mice
T9600 499-508 SO_EXT:wild_type_entity_or_quality denotes wild-type
T9601 509-515 SO_EXT:0001023 denotes allele
T9602 521-523 SO_EXT:0000028 denotes bp
T9603 549-552 CHEBI_SO_EXT:RNA denotes RNA
T9604 599-612 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T9605 636-642 UBERON:0000479 denotes tissue
T9606 648-656 SO_EXT:genotype_or_entity_with_genotype denotes genotype

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9493 1-4 PR:000004122 denotes Apc
T9494 5-16 SO:0000673 denotes transcripts
T9495 51-58 SO:0000112 denotes primers
T9496 68-72 SO:0000147 denotes exon
T9497 136-142 UBERON:0000479 denotes tissue
T9498 180-191 SO:0000006 denotes PCR product
T9499 197-199 SO:0000028 denotes bp
T9500 220-223 PR:000004122 denotes Apc
T9501 225-228 PR:000004122 denotes Apc
T9502 234-240 SO:0001023 denotes allele
T9503 253-260 UBERON:0000479 denotes tissues
T9504 298-307 GO:0010467 denotes expressed
T9505 315-318 PR:000009454 denotes K14
T9506 332-336 NCBITaxon:10088 denotes mice
T9507 391-394 PR:000009454 denotes K14
T9508 408-413 NCBITaxon:10088 denotes mouse
T9509 414-421 UBERON:0000479 denotes tissues
T9510 437-442 UBERON:0002107 denotes liver
T9511 446-449 PR:000009454 denotes K14
T9512 463-467 NCBITaxon:10088 denotes mice
T9513 509-515 SO:0001023 denotes allele
T9514 521-523 SO:0000028 denotes bp
T9515 636-642 UBERON:0000479 denotes tissue

craft-sa-dev

Id Subject Object Predicate Lexical cue
T9831 1-4 NN denotes Apc
T9832 5-16 NNS denotes transcripts
T9833 27-35 VBN denotes analyzed
T9834 17-21 VBD denotes were
T9835 22-26 RB denotes also
T9836 36-38 IN denotes by
T9837 39-41 NN denotes RT
T9838 42-45 NN denotes PCR
T9839 41-42 HYPH denotes -
T9840 46-50 IN denotes with
T9841 51-58 NNS denotes primers
T9842 59-67 VBG denotes spanning
T9843 68-72 NN denotes exon
T9844 73-75 CD denotes 14
T9845 76-77 -LRB- denotes (
T9846 84-86 NN denotes 1A
T9847 77-83 NN denotes Figure
T9848 86-87 -RRB- denotes )
T9849 88-93 VBG denotes using
T9850 94-99 JJ denotes total
T9851 100-103 NN denotes RNA
T9852 104-112 VBN denotes isolated
T9853 113-117 IN denotes from
T9854 118-121 DT denotes the
T9855 143-150 NNS denotes samples
T9856 122-135 VBG denotes corresponding
T9857 136-142 NN denotes tissue
T9858 150-151 . denotes .
T9859 151-337 sentence denotes We detected the expected RT-PCR product (313 bp) from the truncated Apc (ApcΔ580) allele only in the tissues where Cre recombinase is known to be expressed in the K14-cre–positive mice.
T9860 152-154 PRP denotes We
T9861 155-163 VBD denotes detected
T9862 164-167 DT denotes the
T9863 184-191 NN denotes product
T9864 168-176 VBN denotes expected
T9865 177-179 NN denotes RT
T9866 180-183 NN denotes PCR
T9867 179-180 HYPH denotes -
T9868 192-193 -LRB- denotes (
T9869 197-199 NN denotes bp
T9870 193-196 CD denotes 313
T9871 199-200 -RRB- denotes )
T9872 201-205 IN denotes from
T9873 206-209 DT denotes the
T9874 234-240 NN denotes allele
T9875 210-219 VBN denotes truncated
T9876 220-223 NN denotes Apc
T9877 224-225 -LRB- denotes (
T9878 225-232 NN denotes ApcΔ580
T9879 232-233 -RRB- denotes )
T9880 241-245 RB denotes only
T9881 246-248 IN denotes in
T9882 249-252 DT denotes the
T9883 253-260 NNS denotes tissues
T9884 261-266 WRB denotes where
T9885 286-291 VBN denotes known
T9886 267-270 NN denotes Cre
T9887 271-282 NN denotes recombinase
T9888 283-285 VBZ denotes is
T9889 292-294 TO denotes to
T9890 298-307 VBN denotes expressed
T9891 295-297 VB denotes be
T9892 308-310 IN denotes in
T9893 311-314 DT denotes the
T9894 332-336 NNS denotes mice
T9895 315-318 NN denotes K14
T9896 319-322 NN denotes cre
T9897 318-319 HYPH denotes -
T9898 323-331 JJ denotes positive
T9899 322-323 HYPH denotes –
T9900 336-337 . denotes .
T9901 337-685 sentence denotes However, this product was not detected in either the K14-cre–negative mouse tissues samples or the liver of K14-cre–positive mice, and only the product from the wild-type allele (528 bp) was detected from these RNA samples, further confirming that Cre-mediated recombination has taken place in the tissue- and genotype-specific manner (Figure 3B).
T9902 338-345 RB denotes However
T9903 368-376 VBN denotes detected
T9904 345-347 , denotes ,
T9905 347-351 DT denotes this
T9906 352-359 NN denotes product
T9907 360-363 VBD denotes was
T9908 364-367 RB denotes not
T9909 377-379 IN denotes in
T9910 380-386 CC denotes either
T9911 422-429 NNS denotes samples
T9912 387-390 DT denotes the
T9913 391-394 NN denotes K14
T9914 395-398 NN denotes cre
T9915 394-395 HYPH denotes -
T9916 399-407 JJ denotes negative
T9917 398-399 HYPH denotes –
T9918 408-413 NN denotes mouse
T9919 414-421 NNS denotes tissues
T9920 430-432 CC denotes or
T9921 433-436 DT denotes the
T9922 437-442 NN denotes liver
T9923 443-445 IN denotes of
T9924 446-449 NN denotes K14
T9925 450-453 NN denotes cre
T9926 449-450 HYPH denotes -
T9927 454-462 JJ denotes positive
T9928 453-454 HYPH denotes –
T9929 463-467 NNS denotes mice
T9930 467-469 , denotes ,
T9931 469-472 CC denotes and
T9932 473-477 RB denotes only
T9933 482-489 NN denotes product
T9934 478-481 DT denotes the
T9935 529-537 VBN denotes detected
T9936 490-494 IN denotes from
T9937 495-498 DT denotes the
T9938 509-515 NN denotes allele
T9939 499-503 JJ denotes wild
T9940 504-508 NN denotes type
T9941 503-504 HYPH denotes -
T9942 516-517 -LRB- denotes (
T9943 521-523 NN denotes bp
T9944 517-520 CD denotes 528
T9945 523-524 -RRB- denotes )
T9946 525-528 VBD denotes was
T9947 538-542 IN denotes from
T9948 543-548 DT denotes these
T9949 553-560 NNS denotes samples
T9950 549-552 NN denotes RNA
T9951 560-562 , denotes ,
T9952 562-569 RB denotes further
T9953 570-580 VBG denotes confirming
T9954 581-585 IN denotes that
T9955 617-622 VBN denotes taken
T9956 586-589 NN denotes Cre
T9957 590-598 JJ denotes mediated
T9958 589-590 HYPH denotes -
T9959 599-612 NN denotes recombination
T9960 613-616 VBZ denotes has
T9961 623-628 NN denotes place
T9962 629-631 IN denotes in
T9963 632-635 DT denotes the
T9964 666-672 NN denotes manner
T9965 636-642 NN denotes tissue
T9966 657-665 JJ denotes specific
T9967 642-643 HYPH denotes -
T9968 644-647 CC denotes and
T9969 648-656 NN denotes genotype
T9970 656-657 HYPH denotes -
T9971 673-674 -LRB- denotes (
T9972 681-683 NN denotes 3B
T9973 674-680 NN denotes Figure
T9974 683-684 -RRB- denotes )
T9975 684-685 . denotes .
R2893 T9831 T9832 compound Apc,transcripts
R2894 T9832 T9833 nsubjpass transcripts,analyzed
R2895 T9834 T9833 auxpass were,analyzed
R2896 T9835 T9833 advmod also,analyzed
R2897 T9836 T9833 prep by,analyzed
R2898 T9837 T9838 compound RT,PCR
R2899 T9838 T9836 pobj PCR,by
R2900 T9839 T9838 punct -,PCR
R2901 T9840 T9838 prep with,PCR
R2902 T9841 T9840 pobj primers,with
R2903 T9842 T9841 acl spanning,primers
R2904 T9843 T9842 dobj exon,spanning
R2905 T9844 T9843 nummod 14,exon
R2906 T9845 T9846 punct (,1A
R2907 T9846 T9833 parataxis 1A,analyzed
R2908 T9847 T9846 compound Figure,1A
R2909 T9848 T9846 punct ),1A
R2910 T9849 T9833 advcl using,analyzed
R2911 T9850 T9851 amod total,RNA
R2912 T9851 T9849 dobj RNA,using
R2913 T9852 T9851 acl isolated,RNA
R2914 T9853 T9852 prep from,isolated
R2915 T9854 T9855 det the,samples
R2916 T9855 T9853 pobj samples,from
R2917 T9856 T9855 amod corresponding,samples
R2918 T9857 T9855 compound tissue,samples
R2919 T9858 T9833 punct .,analyzed
R2920 T9860 T9861 nsubj We,detected
R2921 T9862 T9863 det the,product
R2922 T9863 T9861 dobj product,detected
R2923 T9864 T9863 amod expected,product
R2924 T9865 T9866 compound RT,PCR
R2925 T9866 T9863 compound PCR,product
R2926 T9867 T9866 punct -,PCR
R2927 T9868 T9869 punct (,bp
R2928 T9869 T9863 parataxis bp,product
R2929 T9870 T9869 nummod 313,bp
R2930 T9871 T9869 punct ),bp
R2931 T9872 T9863 prep from,product
R2932 T9873 T9874 det the,allele
R2933 T9874 T9872 pobj allele,from
R2934 T9875 T9876 amod truncated,Apc
R2935 T9876 T9874 nmod Apc,allele
R2936 T9877 T9876 punct (,Apc
R2937 T9878 T9876 appos ApcΔ580,Apc
R2938 T9879 T9874 punct ),allele
R2939 T9880 T9881 advmod only,in
R2940 T9881 T9861 prep in,detected
R2941 T9882 T9883 det the,tissues
R2942 T9883 T9881 pobj tissues,in
R2943 T9884 T9885 advmod where,known
R2944 T9885 T9883 advcl known,tissues
R2945 T9886 T9887 compound Cre,recombinase
R2946 T9887 T9885 nsubjpass recombinase,known
R2947 T9888 T9885 auxpass is,known
R2948 T9889 T9890 aux to,expressed
R2949 T9890 T9885 xcomp expressed,known
R2950 T9891 T9890 auxpass be,expressed
R2951 T9892 T9890 prep in,expressed
R2952 T9893 T9894 det the,mice
R2953 T9894 T9892 pobj mice,in
R2954 T9895 T9896 compound K14,cre
R2955 T9896 T9898 npadvmod cre,positive
R2956 T9897 T9896 punct -,cre
R2957 T9898 T9894 amod positive,mice
R2958 T9899 T9898 punct –,positive
R2959 T9900 T9861 punct .,detected
R2960 T9902 T9903 advmod However,detected
R2961 T9904 T9903 punct ", ",detected
R2962 T9905 T9906 det this,product
R2963 T9906 T9903 nsubjpass product,detected
R2964 T9907 T9903 auxpass was,detected
R2965 T9908 T9903 neg not,detected
R2966 T9909 T9903 prep in,detected
R2967 T9910 T9911 preconj either,samples
R2968 T9911 T9909 pobj samples,in
R2969 T9912 T9911 det the,samples
R2970 T9913 T9914 compound K14,cre
R2971 T9914 T9916 npadvmod cre,negative
R2972 T9915 T9914 punct -,cre
R2973 T9916 T9911 amod negative,samples
R2974 T9917 T9916 punct –,negative
R2975 T9918 T9919 compound mouse,tissues
R2976 T9919 T9911 compound tissues,samples
R2977 T9920 T9911 cc or,samples
R2978 T9921 T9922 det the,liver
R2979 T9922 T9911 conj liver,samples
R2980 T9923 T9922 prep of,liver
R2981 T9924 T9925 compound K14,cre
R2982 T9925 T9927 npadvmod cre,positive
R2983 T9926 T9925 punct -,cre
R2984 T9927 T9929 amod positive,mice
R2985 T9928 T9927 punct –,positive
R2986 T9929 T9923 pobj mice,of
R2987 T9930 T9903 punct ", ",detected
R2988 T9931 T9903 cc and,detected
R2989 T9932 T9933 advmod only,product
R2990 T9933 T9935 nsubjpass product,detected
R2991 T9934 T9933 det the,product
R2992 T9935 T9903 conj detected,detected
R2993 T9936 T9933 prep from,product
R2994 T9937 T9938 det the,allele
R2995 T9938 T9936 pobj allele,from
R2996 T9939 T9940 amod wild,type
R2997 T9940 T9938 compound type,allele
R2998 T9941 T9940 punct -,type
R2999 T9942 T9943 punct (,bp
R3000 T9943 T9933 parataxis bp,product
R3001 T9944 T9943 nummod 528,bp
R3002 T9945 T9943 punct ),bp
R3003 T9946 T9935 auxpass was,detected
R3004 T9947 T9935 prep from,detected
R3005 T9948 T9949 det these,samples
R3006 T9949 T9947 pobj samples,from
R3007 T9950 T9949 compound RNA,samples
R3008 T9951 T9935 punct ", ",detected
R3009 T9952 T9953 advmod further,confirming
R3010 T9953 T9935 advcl confirming,detected
R3011 T9954 T9955 mark that,taken
R3012 T9955 T9953 ccomp taken,confirming
R3013 T9956 T9957 npadvmod Cre,mediated
R3014 T9957 T9959 amod mediated,recombination
R3015 T9958 T9957 punct -,mediated
R3016 T9959 T9955 nsubj recombination,taken
R3017 T9960 T9955 aux has,taken
R3018 T9961 T9955 dobj place,taken
R3019 T9962 T9955 prep in,taken
R3020 T9963 T9964 det the,manner
R3021 T9964 T9962 pobj manner,in
R3022 T9965 T9966 npadvmod tissue,specific
R3023 T9966 T9964 amod specific,manner
R3024 T9967 T9965 punct -,tissue
R3025 T9968 T9965 cc and,tissue
R3026 T9969 T9965 conj genotype,tissue
R3027 T9970 T9966 punct -,specific
R3028 T9971 T9972 punct (,3B
R3029 T9972 T9935 parataxis 3B,detected
R3030 T9973 T9972 compound Figure,3B
R3031 T9974 T9972 punct ),3B
R3032 T9975 T9903 punct .,detected