
PMC:1564426 / 20242-20927
Annnotations
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9575 | 1-4 | PR_EXT:000004122 | denotes | Apc |
T9576 | 5-16 | SO_EXT:0000673 | denotes | transcripts |
T9577 | 39-41 | GO_EXT:reverse_transcription_or_reverse_transcriptase | denotes | RT |
T9578 | 51-58 | SO_EXT:0000112 | denotes | primers |
T9579 | 68-72 | SO_EXT:0000147 | denotes | exon |
T9580 | 100-103 | CHEBI_SO_EXT:RNA | denotes | RNA |
T9581 | 136-142 | UBERON:0000479 | denotes | tissue |
T9582 | 177-179 | GO_EXT:reverse_transcription_or_reverse_transcriptase | denotes | RT |
T9583 | 180-191 | SO_EXT:0000006 | denotes | PCR product |
T9584 | 197-199 | SO_EXT:0000028 | denotes | bp |
T9585 | 210-219 | SO_EXT:sequence_truncation_process | denotes | truncated |
T9586 | 220-223 | PR_EXT:000004122 | denotes | Apc |
T9587 | 225-228 | PR_EXT:000004122 | denotes | Apc |
T9588 | 234-240 | SO_EXT:0001023 | denotes | allele |
T9589 | 253-260 | UBERON:0000479 | denotes | tissues |
T9590 | 271-282 | GO_EXT:recombinase | denotes | recombinase |
T9591 | 298-307 | GO:0010467 | denotes | expressed |
T9592 | 315-318 | PR_EXT:000009454 | denotes | K14 |
T9593 | 332-336 | NCBITaxon:10088 | denotes | mice |
T9594 | 391-394 | PR_EXT:000009454 | denotes | K14 |
T9595 | 408-413 | NCBITaxon:10088 | denotes | mouse |
T9596 | 414-421 | UBERON:0000479 | denotes | tissues |
T9597 | 437-442 | UBERON:0002107 | denotes | liver |
T9598 | 446-449 | PR_EXT:000009454 | denotes | K14 |
T9599 | 463-467 | NCBITaxon:10088 | denotes | mice |
T9600 | 499-508 | SO_EXT:wild_type_entity_or_quality | denotes | wild-type |
T9601 | 509-515 | SO_EXT:0001023 | denotes | allele |
T9602 | 521-523 | SO_EXT:0000028 | denotes | bp |
T9603 | 549-552 | CHEBI_SO_EXT:RNA | denotes | RNA |
T9604 | 599-612 | GO_SO_EXT:sequence_rearrangement_process | denotes | recombination |
T9605 | 636-642 | UBERON:0000479 | denotes | tissue |
T9606 | 648-656 | SO_EXT:genotype_or_entity_with_genotype | denotes | genotype |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9493 | 1-4 | PR:000004122 | denotes | Apc |
T9494 | 5-16 | SO:0000673 | denotes | transcripts |
T9495 | 51-58 | SO:0000112 | denotes | primers |
T9496 | 68-72 | SO:0000147 | denotes | exon |
T9497 | 136-142 | UBERON:0000479 | denotes | tissue |
T9498 | 180-191 | SO:0000006 | denotes | PCR product |
T9499 | 197-199 | SO:0000028 | denotes | bp |
T9500 | 220-223 | PR:000004122 | denotes | Apc |
T9501 | 225-228 | PR:000004122 | denotes | Apc |
T9502 | 234-240 | SO:0001023 | denotes | allele |
T9503 | 253-260 | UBERON:0000479 | denotes | tissues |
T9504 | 298-307 | GO:0010467 | denotes | expressed |
T9505 | 315-318 | PR:000009454 | denotes | K14 |
T9506 | 332-336 | NCBITaxon:10088 | denotes | mice |
T9507 | 391-394 | PR:000009454 | denotes | K14 |
T9508 | 408-413 | NCBITaxon:10088 | denotes | mouse |
T9509 | 414-421 | UBERON:0000479 | denotes | tissues |
T9510 | 437-442 | UBERON:0002107 | denotes | liver |
T9511 | 446-449 | PR:000009454 | denotes | K14 |
T9512 | 463-467 | NCBITaxon:10088 | denotes | mice |
T9513 | 509-515 | SO:0001023 | denotes | allele |
T9514 | 521-523 | SO:0000028 | denotes | bp |
T9515 | 636-642 | UBERON:0000479 | denotes | tissue |
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9831 | 1-4 | NN | denotes | Apc |
T9832 | 5-16 | NNS | denotes | transcripts |
T9833 | 27-35 | VBN | denotes | analyzed |
T9834 | 17-21 | VBD | denotes | were |
T9835 | 22-26 | RB | denotes | also |
T9836 | 36-38 | IN | denotes | by |
T9837 | 39-41 | NN | denotes | RT |
T9838 | 42-45 | NN | denotes | PCR |
T9839 | 41-42 | HYPH | denotes | - |
T9840 | 46-50 | IN | denotes | with |
T9841 | 51-58 | NNS | denotes | primers |
T9842 | 59-67 | VBG | denotes | spanning |
T9843 | 68-72 | NN | denotes | exon |
T9844 | 73-75 | CD | denotes | 14 |
T9845 | 76-77 | -LRB- | denotes | ( |
T9846 | 84-86 | NN | denotes | 1A |
T9847 | 77-83 | NN | denotes | Figure |
T9848 | 86-87 | -RRB- | denotes | ) |
T9849 | 88-93 | VBG | denotes | using |
T9850 | 94-99 | JJ | denotes | total |
T9851 | 100-103 | NN | denotes | RNA |
T9852 | 104-112 | VBN | denotes | isolated |
T9853 | 113-117 | IN | denotes | from |
T9854 | 118-121 | DT | denotes | the |
T9855 | 143-150 | NNS | denotes | samples |
T9856 | 122-135 | VBG | denotes | corresponding |
T9857 | 136-142 | NN | denotes | tissue |
T9858 | 150-151 | . | denotes | . |
T9859 | 151-337 | sentence | denotes | We detected the expected RT-PCR product (313 bp) from the truncated Apc (ApcΔ580) allele only in the tissues where Cre recombinase is known to be expressed in the K14-cre–positive mice. |
T9860 | 152-154 | PRP | denotes | We |
T9861 | 155-163 | VBD | denotes | detected |
T9862 | 164-167 | DT | denotes | the |
T9863 | 184-191 | NN | denotes | product |
T9864 | 168-176 | VBN | denotes | expected |
T9865 | 177-179 | NN | denotes | RT |
T9866 | 180-183 | NN | denotes | PCR |
T9867 | 179-180 | HYPH | denotes | - |
T9868 | 192-193 | -LRB- | denotes | ( |
T9869 | 197-199 | NN | denotes | bp |
T9870 | 193-196 | CD | denotes | 313 |
T9871 | 199-200 | -RRB- | denotes | ) |
T9872 | 201-205 | IN | denotes | from |
T9873 | 206-209 | DT | denotes | the |
T9874 | 234-240 | NN | denotes | allele |
T9875 | 210-219 | VBN | denotes | truncated |
T9876 | 220-223 | NN | denotes | Apc |
T9877 | 224-225 | -LRB- | denotes | ( |
T9878 | 225-232 | NN | denotes | ApcΔ580 |
T9879 | 232-233 | -RRB- | denotes | ) |
T9880 | 241-245 | RB | denotes | only |
T9881 | 246-248 | IN | denotes | in |
T9882 | 249-252 | DT | denotes | the |
T9883 | 253-260 | NNS | denotes | tissues |
T9884 | 261-266 | WRB | denotes | where |
T9885 | 286-291 | VBN | denotes | known |
T9886 | 267-270 | NN | denotes | Cre |
T9887 | 271-282 | NN | denotes | recombinase |
T9888 | 283-285 | VBZ | denotes | is |
T9889 | 292-294 | TO | denotes | to |
T9890 | 298-307 | VBN | denotes | expressed |
T9891 | 295-297 | VB | denotes | be |
T9892 | 308-310 | IN | denotes | in |
T9893 | 311-314 | DT | denotes | the |
T9894 | 332-336 | NNS | denotes | mice |
T9895 | 315-318 | NN | denotes | K14 |
T9896 | 319-322 | NN | denotes | cre |
T9897 | 318-319 | HYPH | denotes | - |
T9898 | 323-331 | JJ | denotes | positive |
T9899 | 322-323 | HYPH | denotes | – |
T9900 | 336-337 | . | denotes | . |
T9901 | 337-685 | sentence | denotes | However, this product was not detected in either the K14-cre–negative mouse tissues samples or the liver of K14-cre–positive mice, and only the product from the wild-type allele (528 bp) was detected from these RNA samples, further confirming that Cre-mediated recombination has taken place in the tissue- and genotype-specific manner (Figure 3B). |
T9902 | 338-345 | RB | denotes | However |
T9903 | 368-376 | VBN | denotes | detected |
T9904 | 345-347 | , | denotes | , |
T9905 | 347-351 | DT | denotes | this |
T9906 | 352-359 | NN | denotes | product |
T9907 | 360-363 | VBD | denotes | was |
T9908 | 364-367 | RB | denotes | not |
T9909 | 377-379 | IN | denotes | in |
T9910 | 380-386 | CC | denotes | either |
T9911 | 422-429 | NNS | denotes | samples |
T9912 | 387-390 | DT | denotes | the |
T9913 | 391-394 | NN | denotes | K14 |
T9914 | 395-398 | NN | denotes | cre |
T9915 | 394-395 | HYPH | denotes | - |
T9916 | 399-407 | JJ | denotes | negative |
T9917 | 398-399 | HYPH | denotes | – |
T9918 | 408-413 | NN | denotes | mouse |
T9919 | 414-421 | NNS | denotes | tissues |
T9920 | 430-432 | CC | denotes | or |
T9921 | 433-436 | DT | denotes | the |
T9922 | 437-442 | NN | denotes | liver |
T9923 | 443-445 | IN | denotes | of |
T9924 | 446-449 | NN | denotes | K14 |
T9925 | 450-453 | NN | denotes | cre |
T9926 | 449-450 | HYPH | denotes | - |
T9927 | 454-462 | JJ | denotes | positive |
T9928 | 453-454 | HYPH | denotes | – |
T9929 | 463-467 | NNS | denotes | mice |
T9930 | 467-469 | , | denotes | , |
T9931 | 469-472 | CC | denotes | and |
T9932 | 473-477 | RB | denotes | only |
T9933 | 482-489 | NN | denotes | product |
T9934 | 478-481 | DT | denotes | the |
T9935 | 529-537 | VBN | denotes | detected |
T9936 | 490-494 | IN | denotes | from |
T9937 | 495-498 | DT | denotes | the |
T9938 | 509-515 | NN | denotes | allele |
T9939 | 499-503 | JJ | denotes | wild |
T9940 | 504-508 | NN | denotes | type |
T9941 | 503-504 | HYPH | denotes | - |
T9942 | 516-517 | -LRB- | denotes | ( |
T9943 | 521-523 | NN | denotes | bp |
T9944 | 517-520 | CD | denotes | 528 |
T9945 | 523-524 | -RRB- | denotes | ) |
T9946 | 525-528 | VBD | denotes | was |
T9947 | 538-542 | IN | denotes | from |
T9948 | 543-548 | DT | denotes | these |
T9949 | 553-560 | NNS | denotes | samples |
T9950 | 549-552 | NN | denotes | RNA |
T9951 | 560-562 | , | denotes | , |
T9952 | 562-569 | RB | denotes | further |
T9953 | 570-580 | VBG | denotes | confirming |
T9954 | 581-585 | IN | denotes | that |
T9955 | 617-622 | VBN | denotes | taken |
T9956 | 586-589 | NN | denotes | Cre |
T9957 | 590-598 | JJ | denotes | mediated |
T9958 | 589-590 | HYPH | denotes | - |
T9959 | 599-612 | NN | denotes | recombination |
T9960 | 613-616 | VBZ | denotes | has |
T9961 | 623-628 | NN | denotes | place |
T9962 | 629-631 | IN | denotes | in |
T9963 | 632-635 | DT | denotes | the |
T9964 | 666-672 | NN | denotes | manner |
T9965 | 636-642 | NN | denotes | tissue |
T9966 | 657-665 | JJ | denotes | specific |
T9967 | 642-643 | HYPH | denotes | - |
T9968 | 644-647 | CC | denotes | and |
T9969 | 648-656 | NN | denotes | genotype |
T9970 | 656-657 | HYPH | denotes | - |
T9971 | 673-674 | -LRB- | denotes | ( |
T9972 | 681-683 | NN | denotes | 3B |
T9973 | 674-680 | NN | denotes | Figure |
T9974 | 683-684 | -RRB- | denotes | ) |
T9975 | 684-685 | . | denotes | . |
R2893 | T9831 | T9832 | compound | Apc,transcripts |
R2894 | T9832 | T9833 | nsubjpass | transcripts,analyzed |
R2895 | T9834 | T9833 | auxpass | were,analyzed |
R2896 | T9835 | T9833 | advmod | also,analyzed |
R2897 | T9836 | T9833 | prep | by,analyzed |
R2898 | T9837 | T9838 | compound | RT,PCR |
R2899 | T9838 | T9836 | pobj | PCR,by |
R2900 | T9839 | T9838 | punct | -,PCR |
R2901 | T9840 | T9838 | prep | with,PCR |
R2902 | T9841 | T9840 | pobj | primers,with |
R2903 | T9842 | T9841 | acl | spanning,primers |
R2904 | T9843 | T9842 | dobj | exon,spanning |
R2905 | T9844 | T9843 | nummod | 14,exon |
R2906 | T9845 | T9846 | punct | (,1A |
R2907 | T9846 | T9833 | parataxis | 1A,analyzed |
R2908 | T9847 | T9846 | compound | Figure,1A |
R2909 | T9848 | T9846 | punct | ),1A |
R2910 | T9849 | T9833 | advcl | using,analyzed |
R2911 | T9850 | T9851 | amod | total,RNA |
R2912 | T9851 | T9849 | dobj | RNA,using |
R2913 | T9852 | T9851 | acl | isolated,RNA |
R2914 | T9853 | T9852 | prep | from,isolated |
R2915 | T9854 | T9855 | det | the,samples |
R2916 | T9855 | T9853 | pobj | samples,from |
R2917 | T9856 | T9855 | amod | corresponding,samples |
R2918 | T9857 | T9855 | compound | tissue,samples |
R2919 | T9858 | T9833 | punct | .,analyzed |
R2920 | T9860 | T9861 | nsubj | We,detected |
R2921 | T9862 | T9863 | det | the,product |
R2922 | T9863 | T9861 | dobj | product,detected |
R2923 | T9864 | T9863 | amod | expected,product |
R2924 | T9865 | T9866 | compound | RT,PCR |
R2925 | T9866 | T9863 | compound | PCR,product |
R2926 | T9867 | T9866 | punct | -,PCR |
R2927 | T9868 | T9869 | punct | (,bp |
R2928 | T9869 | T9863 | parataxis | bp,product |
R2929 | T9870 | T9869 | nummod | 313,bp |
R2930 | T9871 | T9869 | punct | ),bp |
R2931 | T9872 | T9863 | prep | from,product |
R2932 | T9873 | T9874 | det | the,allele |
R2933 | T9874 | T9872 | pobj | allele,from |
R2934 | T9875 | T9876 | amod | truncated,Apc |
R2935 | T9876 | T9874 | nmod | Apc,allele |
R2936 | T9877 | T9876 | punct | (,Apc |
R2937 | T9878 | T9876 | appos | ApcΔ580,Apc |
R2938 | T9879 | T9874 | punct | ),allele |
R2939 | T9880 | T9881 | advmod | only,in |
R2940 | T9881 | T9861 | prep | in,detected |
R2941 | T9882 | T9883 | det | the,tissues |
R2942 | T9883 | T9881 | pobj | tissues,in |
R2943 | T9884 | T9885 | advmod | where,known |
R2944 | T9885 | T9883 | advcl | known,tissues |
R2945 | T9886 | T9887 | compound | Cre,recombinase |
R2946 | T9887 | T9885 | nsubjpass | recombinase,known |
R2947 | T9888 | T9885 | auxpass | is,known |
R2948 | T9889 | T9890 | aux | to,expressed |
R2949 | T9890 | T9885 | xcomp | expressed,known |
R2950 | T9891 | T9890 | auxpass | be,expressed |
R2951 | T9892 | T9890 | prep | in,expressed |
R2952 | T9893 | T9894 | det | the,mice |
R2953 | T9894 | T9892 | pobj | mice,in |
R2954 | T9895 | T9896 | compound | K14,cre |
R2955 | T9896 | T9898 | npadvmod | cre,positive |
R2956 | T9897 | T9896 | punct | -,cre |
R2957 | T9898 | T9894 | amod | positive,mice |
R2958 | T9899 | T9898 | punct | –,positive |
R2959 | T9900 | T9861 | punct | .,detected |
R2960 | T9902 | T9903 | advmod | However,detected |
R2961 | T9904 | T9903 | punct | ", ",detected |
R2962 | T9905 | T9906 | det | this,product |
R2963 | T9906 | T9903 | nsubjpass | product,detected |
R2964 | T9907 | T9903 | auxpass | was,detected |
R2965 | T9908 | T9903 | neg | not,detected |
R2966 | T9909 | T9903 | prep | in,detected |
R2967 | T9910 | T9911 | preconj | either,samples |
R2968 | T9911 | T9909 | pobj | samples,in |
R2969 | T9912 | T9911 | det | the,samples |
R2970 | T9913 | T9914 | compound | K14,cre |
R2971 | T9914 | T9916 | npadvmod | cre,negative |
R2972 | T9915 | T9914 | punct | -,cre |
R2973 | T9916 | T9911 | amod | negative,samples |
R2974 | T9917 | T9916 | punct | –,negative |
R2975 | T9918 | T9919 | compound | mouse,tissues |
R2976 | T9919 | T9911 | compound | tissues,samples |
R2977 | T9920 | T9911 | cc | or,samples |
R2978 | T9921 | T9922 | det | the,liver |
R2979 | T9922 | T9911 | conj | liver,samples |
R2980 | T9923 | T9922 | prep | of,liver |
R2981 | T9924 | T9925 | compound | K14,cre |
R2982 | T9925 | T9927 | npadvmod | cre,positive |
R2983 | T9926 | T9925 | punct | -,cre |
R2984 | T9927 | T9929 | amod | positive,mice |
R2985 | T9928 | T9927 | punct | –,positive |
R2986 | T9929 | T9923 | pobj | mice,of |
R2987 | T9930 | T9903 | punct | ", ",detected |
R2988 | T9931 | T9903 | cc | and,detected |
R2989 | T9932 | T9933 | advmod | only,product |
R2990 | T9933 | T9935 | nsubjpass | product,detected |
R2991 | T9934 | T9933 | det | the,product |
R2992 | T9935 | T9903 | conj | detected,detected |
R2993 | T9936 | T9933 | prep | from,product |
R2994 | T9937 | T9938 | det | the,allele |
R2995 | T9938 | T9936 | pobj | allele,from |
R2996 | T9939 | T9940 | amod | wild,type |
R2997 | T9940 | T9938 | compound | type,allele |
R2998 | T9941 | T9940 | punct | -,type |
R2999 | T9942 | T9943 | punct | (,bp |
R3000 | T9943 | T9933 | parataxis | bp,product |
R3001 | T9944 | T9943 | nummod | 528,bp |
R3002 | T9945 | T9943 | punct | ),bp |
R3003 | T9946 | T9935 | auxpass | was,detected |
R3004 | T9947 | T9935 | prep | from,detected |
R3005 | T9948 | T9949 | det | these,samples |
R3006 | T9949 | T9947 | pobj | samples,from |
R3007 | T9950 | T9949 | compound | RNA,samples |
R3008 | T9951 | T9935 | punct | ", ",detected |
R3009 | T9952 | T9953 | advmod | further,confirming |
R3010 | T9953 | T9935 | advcl | confirming,detected |
R3011 | T9954 | T9955 | mark | that,taken |
R3012 | T9955 | T9953 | ccomp | taken,confirming |
R3013 | T9956 | T9957 | npadvmod | Cre,mediated |
R3014 | T9957 | T9959 | amod | mediated,recombination |
R3015 | T9958 | T9957 | punct | -,mediated |
R3016 | T9959 | T9955 | nsubj | recombination,taken |
R3017 | T9960 | T9955 | aux | has,taken |
R3018 | T9961 | T9955 | dobj | place,taken |
R3019 | T9962 | T9955 | prep | in,taken |
R3020 | T9963 | T9964 | det | the,manner |
R3021 | T9964 | T9962 | pobj | manner,in |
R3022 | T9965 | T9966 | npadvmod | tissue,specific |
R3023 | T9966 | T9964 | amod | specific,manner |
R3024 | T9967 | T9965 | punct | -,tissue |
R3025 | T9968 | T9965 | cc | and,tissue |
R3026 | T9969 | T9965 | conj | genotype,tissue |
R3027 | T9970 | T9966 | punct | -,specific |
R3028 | T9971 | T9972 | punct | (,3B |
R3029 | T9972 | T9935 | parataxis | 3B,detected |
R3030 | T9973 | T9972 | compound | Figure,3B |
R3031 | T9974 | T9972 | punct | ),3B |
R3032 | T9975 | T9903 | punct | .,detected |