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We next mutated the C-terminal part of the p53 gene in two rounds of PCR mutagenesis, first with primers 5′-GGGCCTGACTCAGACGGATCCCCTCTGCATCCCGTC-3′ and 5′-GACGGGATGCAGAGGGGATCCGTCTGAGTCAGGCCC-3′, which removed the stop codon and introduced a BamHI site, then with primers 5′-GACGGATCCCCTCTGAATTCCGTCCCCATCACCA-3′ and 5′-TGGTGATGGGGACGGAATACAGAGGGGATCCGTC-3′, which introduced an EcoRI site. We verified the sequence from the mutated plasmid, then digested it with BamHI and EcoRI, to insert in frame GFP sequences from a Bam HI-EcoRI fragment of plasmid phr-GFP-1 (Stratagene). We verified the sequence of this p53-GFP fusion fragment, then swapped it in the L3-p53PmlEagPuroΔTK-1L plasmid (see above) by HindIII and FseI digestion, resulting in the p53GFP exchange construct, the sequence which was verified before use. The p53ΔPGFP exchange construct was engineered by combining sequences from the p53GFP exchange plasmid and sequences from the p53ΔP targeting construct described recently (5). Its sequence was also verified before use."}

{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T5702","span":{"begin":10,"end":13},"obj":"PR_EXT:000003035"},{"id":"T5703","span":{"begin":18,"end":24},"obj":"SO_EXT:sequence_fusion_entity_or_process"},{"id":"T5704","span":{"begin":25,"end":32},"obj":"CHEBI_PR_EXT:protein"},{"id":"T5705","span":{"begin":61,"end":68},"obj":"PR_EXT:P43870"},{"id":"T5706","span":{"begin":85,"end":88},"obj":"PR_EXT:000003035"},{"id":"T5707","span":{"begin":113,"end":125},"obj":"SO_EXT:0000852"},{"id":"T5708","span":{"begin":132,"end":141},"obj":"SO_EXT:biological_sequence"},{"id":"T5709","span":{"begin":142,"end":152},"obj":"SO_EXT:sequence_downstreamness"},{"id":"T5710","span":{"begin":160,"end":164},"obj":"SO_EXT:0000704"},{"id":"T5711","span":{"begin":181,"end":188},"obj":"SO_EXT:sequence_alteration_process"},{"id":"T5712","span":{"begin":193,"end":200},"obj":"PR_EXT:P43870"},{"id":"T5713","span":{"begin":232,"end":239},"obj":"SO_EXT:sequence_alteration_process"},{"id":"T5714","span":{"begin":244,"end":254},"obj":"CHEBI_SO_EXT:C_terminus_or_C_terminal_region"},{"id":"T5715","span":{"begin":255,"end":262},"obj":"_FRAGMENT"},{"id":"T5716","span":{"begin":271,"end":275},"obj":"SO_EXT:0000831"},{"id":"T5717","span":{"begin":267,"end":270},"obj":"PR_EXT:000003035"},{"id":"T5718","span":{"begin":297,"end":308},"obj":"SO_EXT:sequence_alteration_process"},{"id":"T5719","span":{"begin":321,"end":328},"obj":"SO_EXT:0000112"},{"id":"T5720","span":{"begin":438,"end":448},"obj":"SO_EXT:0000319"},{"id":"T5721","span":{"begin":466,"end":471},"obj":"PR_EXT:P23940"},{"id":"T5722","span":{"begin":488,"end":495},"obj":"SO_EXT:0000112"},{"id":"T5723","span":{"begin":631,"end":639},"obj":"SO_EXT:biological_sequence"},{"id":"T5724","span":{"begin":649,"end":656},"obj":"SO_EXT:sequence_alteration_process"},{"id":"T5725","span":{"begin":657,"end":664},"obj":"SO_EXT:0000155"},{"id":"T5726","span":{"begin":688,"end":693},"obj":"PR_EXT:P23940"},{"id":"T5727","span":{"begin":708,"end":714},"obj":"SO_EXT:sequence_insertion_process"},{"id":"T5728","span":{"begin":715,"end":723},"obj":"SO:0001817"},{"id":"T5729","span":{"begin":728,"end":737},"obj":"SO_EXT:biological_sequence"},{"id":"T5730","span":{"begin":745,"end":751},"obj":"PR_EXT:P23940"},{"id":"T5731","span":{"begin":770,"end":777},"obj":"SO_EXT:0000155"},{"id":"T5732","span":{"begin":818,"end":826},"obj":"SO_EXT:biological_sequence"},{"id":"T5733","span":{"begin":835,"end":838},"obj":"PR_EXT:000003035"},{"id":"T5734","span":{"begin":843,"end":849},"obj":"SO_EXT:sequence_fusion_entity_or_process"},{"id":"T5735","span":{"begin":906,"end":913},"obj":"SO_EXT:0000155"},{"id":"T5736","span":{"begin":929,"end":936},"obj":"PR_EXT:P43870"},{"id":"T5737","span":{"begin":974,"end":977},"obj":"PR_EXT:000003035"},{"id":"T5738","span":{"begin":981,"end":989},"obj":"SO_EXT:sequence_substitution_process"},{"id":"T5739","span":{"begin":990,"end":999},"obj":"SO_EXT:engineered_biological_sequence"},{"id":"T5740","span":{"begin":1005,"end":1013},"obj":"SO_EXT:biological_sequence"},{"id":"T5741","span":{"begin":1049,"end":1052},"obj":"PR_EXT:000003035"},{"id":"T5742","span":{"begin":1058,"end":1066},"obj":"SO_EXT:sequence_substitution_process"},{"id":"T5743","span":{"begin":1067,"end":1076},"obj":"SO_EXT:engineered_biological_sequence"},{"id":"T5744","span":{"begin":1105,"end":1114},"obj":"SO_EXT:biological_sequence"},{"id":"T5745","span":{"begin":1124,"end":1127},"obj":"PR_EXT:000003035"},{"id":"T5746","span":{"begin":1131,"end":1139},"obj":"SO_EXT:sequence_substitution_process"},{"id":"T5747","span":{"begin":1140,"end":1147},"obj":"SO_EXT:0000155"},{"id":"T5748","span":{"begin":1152,"end":1161},"obj":"SO_EXT:biological_sequence"},{"id":"T5749","span":{"begin":1171,"end":1174},"obj":"PR_EXT:000003035"},{"id":"T5750","span":{"begin":1187,"end":1196},"obj":"SO_EXT:engineered_biological_sequence"},{"id":"T5751","span":{"begin":1225,"end":1233},"obj":"SO_EXT:biological_sequence"}],"relations":[{"id":"R1617","pred":"_lexicallyChainedTo","subj":"T5716","obj":"T5715"}],"text":"To make a p53-GFP fusion protein, we first subcloned a SacII-HindIII fragment of the p53 locus (corresponding to part of exon 10 to sequences downstream of the gene) into pBS, then mutated the HindIII site into a FseI site. We next mutated the C-terminal part of the p53 gene in two rounds of PCR mutagenesis, first with primers 5′-GGGCCTGACTCAGACGGATCCCCTCTGCATCCCGTC-3′ and 5′-GACGGGATGCAGAGGGGATCCGTCTGAGTCAGGCCC-3′, which removed the stop codon and introduced a BamHI site, then with primers 5′-GACGGATCCCCTCTGAATTCCGTCCCCATCACCA-3′ and 5′-TGGTGATGGGGACGGAATACAGAGGGGATCCGTC-3′, which introduced an EcoRI site. We verified the sequence from the mutated plasmid, then digested it with BamHI and EcoRI, to insert in frame GFP sequences from a Bam HI-EcoRI fragment of plasmid phr-GFP-1 (Stratagene). We verified the sequence of this p53-GFP fusion fragment, then swapped it in the L3-p53PmlEagPuroΔTK-1L plasmid (see above) by HindIII and FseI digestion, resulting in the p53GFP exchange construct, the sequence which was verified before use. The p53ΔPGFP exchange construct was engineered by combining sequences from the p53GFP exchange plasmid and sequences from the p53ΔP targeting construct described recently (5). Its sequence was also verified before use."}

{"project":"craft-ca-core-dev","denotations":[{"id":"T5671","span":{"begin":10,"end":13},"obj":"PR:000003035"},{"id":"T5672","span":{"begin":61,"end":68},"obj":"PR:P43870"},{"id":"T5673","span":{"begin":85,"end":88},"obj":"PR:000003035"},{"id":"T5674","span":{"begin":113,"end":125},"obj":"SO:0000852"},{"id":"T5675","span":{"begin":160,"end":164},"obj":"SO:0000704"},{"id":"T5676","span":{"begin":193,"end":200},"obj":"PR:P43870"},{"id":"T5677","span":{"begin":255,"end":262},"obj":"_FRAGMENT"},{"id":"T5678","span":{"begin":271,"end":275},"obj":"SO:0000831"},{"id":"T5679","span":{"begin":267,"end":270},"obj":"PR:000003035"},{"id":"T5680","span":{"begin":321,"end":328},"obj":"SO:0000112"},{"id":"T5681","span":{"begin":438,"end":448},"obj":"SO:0000319"},{"id":"T5682","span":{"begin":466,"end":471},"obj":"PR:P23940"},{"id":"T5683","span":{"begin":488,"end":495},"obj":"SO:0000112"},{"id":"T5684","span":{"begin":657,"end":664},"obj":"SO:0000155"},{"id":"T5685","span":{"begin":688,"end":693},"obj":"PR:P23940"},{"id":"T5686","span":{"begin":715,"end":723},"obj":"SO:0001817"},{"id":"T5687","span":{"begin":745,"end":751},"obj":"PR:P23940"},{"id":"T5688","span":{"begin":770,"end":777},"obj":"SO:0000155"},{"id":"T5689","span":{"begin":835,"end":838},"obj":"PR:000003035"},{"id":"T5690","span":{"begin":906,"end":913},"obj":"SO:0000155"},{"id":"T5691","span":{"begin":929,"end":936},"obj":"PR:P43870"},{"id":"T5692","span":{"begin":974,"end":977},"obj":"PR:000003035"},{"id":"T5693","span":{"begin":1049,"end":1052},"obj":"PR:000003035"},{"id":"T5694","span":{"begin":1124,"end":1127},"obj":"PR:000003035"},{"id":"T5695","span":{"begin":1140,"end":1147},"obj":"SO:0000155"},{"id":"T5696","span":{"begin":1171,"end":1174},"obj":"PR:000003035"}],"relations":[{"id":"R1616","pred":"_lexicallyChainedTo","subj":"T5678","obj":"T5677"}],"text":"To make a p53-GFP fusion protein, we first subcloned a SacII-HindIII fragment of the p53 locus (corresponding to part of exon 10 to sequences downstream of the gene) into pBS, then mutated the HindIII site into a FseI site. We next mutated the C-terminal part of the p53 gene in two rounds of PCR mutagenesis, first with primers 5′-GGGCCTGACTCAGACGGATCCCCTCTGCATCCCGTC-3′ and 5′-GACGGGATGCAGAGGGGATCCGTCTGAGTCAGGCCC-3′, which removed the stop codon and introduced a BamHI site, then with primers 5′-GACGGATCCCCTCTGAATTCCGTCCCCATCACCA-3′ and 5′-TGGTGATGGGGACGGAATACAGAGGGGATCCGTC-3′, which introduced an EcoRI site. We verified the sequence from the mutated plasmid, then digested it with BamHI and EcoRI, to insert in frame GFP sequences from a Bam HI-EcoRI fragment of plasmid phr-GFP-1 (Stratagene). We verified the sequence of this p53-GFP fusion fragment, then swapped it in the L3-p53PmlEagPuroΔTK-1L plasmid (see above) by HindIII and FseI digestion, resulting in the p53GFP exchange construct, the sequence which was verified before use. The p53ΔPGFP exchange construct was engineered by combining sequences from the p53GFP exchange plasmid and sequences from the p53ΔP targeting construct described recently (5). Its sequence was also verified before use."}

{"project":"2_test","denotations":[{"id":"16870721-16616333-76660903","span":{"begin":1217,"end":1218},"obj":"16616333"}],"text":"To make a p53-GFP fusion protein, we first subcloned a SacII-HindIII fragment of the p53 locus (corresponding to part of exon 10 to sequences downstream of the gene) into pBS, then mutated the HindIII site into a FseI site. We next mutated the C-terminal part of the p53 gene in two rounds of PCR mutagenesis, first with primers 5′-GGGCCTGACTCAGACGGATCCCCTCTGCATCCCGTC-3′ and 5′-GACGGGATGCAGAGGGGATCCGTCTGAGTCAGGCCC-3′, which removed the stop codon and introduced a BamHI site, then with primers 5′-GACGGATCCCCTCTGAATTCCGTCCCCATCACCA-3′ and 5′-TGGTGATGGGGACGGAATACAGAGGGGATCCGTC-3′, which introduced an EcoRI site. We verified the sequence from the mutated plasmid, then digested it with BamHI and EcoRI, to insert in frame GFP sequences from a Bam HI-EcoRI fragment of plasmid phr-GFP-1 (Stratagene). We verified the sequence of this p53-GFP fusion fragment, then swapped it in the L3-p53PmlEagPuroΔTK-1L plasmid (see above) by HindIII and FseI digestion, resulting in the p53GFP exchange construct, the sequence which was verified before use. The p53ΔPGFP exchange construct was engineered by combining sequences from the p53GFP exchange plasmid and sequences from the p53ΔP targeting construct described recently (5). Its sequence was also verified before use."}