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PMC:1540739 / 6650-7240 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4718 120-128 VBD denotes occurred
T4719 7-9 PRP denotes it
T4720 13-22 VB denotes recombine
T4721 10-12 TO denotes to
T4722 23-27 IN denotes with
T4723 28-30 NN denotes WT
T4724 31-35 NN denotes loxP
T4725 35-37 , denotes ,
T4726 37-45 VBG denotes ensuring
T4727 46-55 JJ denotes efficient
T4728 56-60 NN denotes RMCE
T4729 61-63 IN denotes in
T4730 64-71 JJ denotes several
T4731 77-82 NNS denotes lines
T4732 72-76 NN denotes cell
T4733 82-84 : denotes :
T4734 84-92 JJ denotes accurate
T4735 93-97 NN denotes RMCE
T4736 98-102 IN denotes with
T4737 103-108 DT denotes these
T4738 114-119 NNS denotes sites
T4739 109-113 NN denotes loxP
T4740 129-133 IN denotes with
T4741 134-136 DT denotes an
T4742 145-154 NN denotes frequency
T4743 137-144 JJ denotes average
T4744 155-157 IN denotes of
T4745 158-160 CD denotes 81
T4746 160-161 NN denotes %
T4747 162-164 IN denotes at
T4748 165-168 CD denotes two
T4749 169-173 NNS denotes loci
T4750 174-176 IN denotes in
T4751 177-180 NN denotes CHO
T4752 181-186 NNS denotes cells
T4753 187-190 CC denotes and
T4754 191-193 DT denotes an
T4755 202-211 NN denotes frequency
T4756 194-201 JJ denotes average
T4757 212-214 IN denotes of
T4758 215-217 CD denotes 69
T4759 217-218 NN denotes %
T4760 219-221 IN denotes at
T4761 222-226 CD denotes four
T4762 227-231 NNS denotes loci
T4763 232-234 IN denotes in
T4764 235-239 NN denotes Hela
T4765 240-245 NNS denotes cells
T4766 246-247 -LRB- denotes (
T4767 247-249 CD denotes 14
T4768 249-250 -RRB- denotes )
T4769 250-251 . denotes .
T4770 251-375 sentence denotes The L3-1L plasmid was first modified to include a ClaI and a FseI site between the LoxP sites, leading to plasmid L3-CF-1L.
T4771 252-255 DT denotes The
T4772 262-269 NN denotes plasmid
T4773 256-258 NN denotes L3
T4774 259-261 NN denotes 1L
T4775 258-259 HYPH denotes -
T4776 280-288 VBN denotes modified
T4777 270-273 VBD denotes was
T4778 274-279 RB denotes first
T4779 289-291 TO denotes to
T4780 292-299 VB denotes include
T4781 300-301 DT denotes a
T4782 302-306 NN denotes ClaI
T4783 307-310 CC denotes and
T4784 311-312 DT denotes a
T4785 318-322 NN denotes site
T4786 313-317 NN denotes FseI
T4787 323-330 IN denotes between
T4788 331-334 DT denotes the
T4789 340-345 NNS denotes sites
T4790 335-339 NN denotes LoxP
T4791 345-347 , denotes ,
T4792 347-354 VBG denotes leading
T4793 355-357 IN denotes to
T4794 358-365 NN denotes plasmid
T4795 372-374 NN denotes 1L
T4796 366-368 NN denotes L3
T4797 368-369 HYPH denotes -
T4798 369-371 NN denotes CF
T4799 371-372 HYPH denotes -
T4800 374-375 . denotes .
T4802 376-378 PRP denotes We
T4803 384-392 VBD denotes modified
T4804 379-383 RB denotes next
T4805 393-394 DT denotes a
T4806 403-410 NN denotes plasmid
T4807 395-402 NN denotes puroΔTK
T4808 411-412 -LRB- denotes (
T4809 412-417 NN denotes YTC37
T4810 417-419 , denotes ,
T4811 419-420 DT denotes a
T4812 426-430 NN denotes gift
T4813 421-425 NN denotes kind
T4814 431-435 IN denotes from
T4815 436-438 NNP denotes A.
T4816 439-446 NNP denotes Bradley
T4817 446-447 -RRB- denotes )
T4818 448-450 IN denotes by
T4819 451-456 VBG denotes using
T4820 457-473 NNS denotes oligonucleotides
T4821 474-476 TO denotes to
T4822 477-484 VB denotes destroy
T4823 485-486 DT denotes a
T4824 492-496 NN denotes site
T4825 487-491 NN denotes NotI
T4826 497-507 RB denotes downstream
T4827 508-510 IN denotes of
T4828 511-514 DT denotes the
T4829 523-527 NN denotes gene
T4830 515-522 NN denotes puroΔTK
T4831 528-531 CC denotes and
T4832 532-541 VB denotes introduce
T4833 542-543 DT denotes a
T4834 549-553 NN denotes site
T4835 544-548 NN denotes NotI
T4836 554-562 RB denotes upstream
T4837 562-564 , denotes ,
T4838 564-567 CC denotes and
T4839 568-569 DT denotes a
T4840 575-579 NN denotes site
T4841 570-574 NN denotes FseI
T4842 580-590 RB denotes downstream
R1149 T4719 T4720 nsubj it,recombine
R1151 T4721 T4720 aux to,recombine
R1152 T4722 T4720 prep with,recombine
R1153 T4723 T4724 compound WT,loxP
R1154 T4724 T4722 pobj loxP,with
R1157 T4727 T4728 amod efficient,RMCE
R1158 T4728 T4726 dobj RMCE,ensuring
R1159 T4729 T4726 prep in,ensuring
R1160 T4730 T4731 amod several,lines
R1161 T4731 T4729 pobj lines,in
R1162 T4732 T4731 compound cell,lines
R1163 T4733 T4718 punct : ,occurred
R1164 T4734 T4735 amod accurate,RMCE
R1165 T4735 T4718 nsubj RMCE,occurred
R1166 T4736 T4735 prep with,RMCE
R1167 T4737 T4738 det these,sites
R1168 T4738 T4736 pobj sites,with
R1169 T4739 T4738 compound loxP,sites
R1170 T4740 T4718 prep with,occurred
R1171 T4741 T4742 det an,frequency
R1172 T4742 T4740 pobj frequency,with
R1173 T4743 T4742 amod average,frequency
R1174 T4744 T4742 prep of,frequency
R1175 T4745 T4746 nummod 81,%
R1176 T4746 T4744 pobj %,of
R1177 T4747 T4742 prep at,frequency
R1178 T4748 T4749 nummod two,loci
R1179 T4749 T4747 pobj loci,at
R1180 T4750 T4749 prep in,loci
R1181 T4751 T4752 compound CHO,cells
R1182 T4752 T4750 pobj cells,in
R1183 T4753 T4742 cc and,frequency
R1184 T4754 T4755 det an,frequency
R1185 T4755 T4742 conj frequency,frequency
R1186 T4756 T4755 amod average,frequency
R1187 T4757 T4755 prep of,frequency
R1188 T4758 T4759 nummod 69,%
R1189 T4759 T4757 pobj %,of
R1190 T4760 T4755 prep at,frequency
R1191 T4761 T4762 nummod four,loci
R1192 T4762 T4760 pobj loci,at
R1193 T4763 T4762 prep in,loci
R1194 T4764 T4765 compound Hela,cells
R1195 T4765 T4763 pobj cells,in
R1196 T4766 T4767 punct (,14
R1197 T4767 T4718 parataxis 14,occurred
R1198 T4768 T4767 punct ),14
R1199 T4769 T4718 punct .,occurred
R1200 T4771 T4772 det The,plasmid
R1201 T4772 T4776 nsubjpass plasmid,modified
R1202 T4773 T4774 compound L3,1L
R1203 T4774 T4772 compound 1L,plasmid
R1204 T4775 T4774 punct -,1L
R1205 T4777 T4776 auxpass was,modified
R1206 T4778 T4776 advmod first,modified
R1207 T4779 T4780 aux to,include
R1208 T4780 T4776 advcl include,modified
R1209 T4781 T4782 det a,ClaI
R1210 T4782 T4780 dobj ClaI,include
R1211 T4783 T4782 cc and,ClaI
R1212 T4784 T4785 det a,site
R1213 T4785 T4782 conj site,ClaI
R1214 T4786 T4785 compound FseI,site
R1215 T4787 T4780 prep between,include
R1216 T4788 T4789 det the,sites
R1217 T4789 T4787 pobj sites,between
R1218 T4790 T4789 compound LoxP,sites
R1219 T4791 T4776 punct ", ",modified
R1220 T4792 T4776 advcl leading,modified
R1221 T4793 T4792 prep to,leading
R1222 T4794 T4795 compound plasmid,1L
R1223 T4795 T4793 pobj 1L,to
R1224 T4796 T4795 compound L3,1L
R1225 T4797 T4795 punct -,1L
R1226 T4798 T4795 compound CF,1L
R1227 T4799 T4795 punct -,1L
R1228 T4800 T4776 punct .,modified
R1229 T4802 T4803 nsubj We,modified
R1230 T4804 T4803 advmod next,modified
R1231 T4805 T4806 det a,plasmid
R1232 T4806 T4803 dobj plasmid,modified
R1233 T4807 T4806 compound puroΔTK,plasmid
R1234 T4808 T4806 punct (,plasmid
R1235 T4809 T4806 appos YTC37,plasmid
R1236 T4810 T4809 punct ", ",YTC37
R1237 T4811 T4812 det a,gift
R1238 T4812 T4809 appos gift,YTC37
R1239 T4813 T4812 compound kind,gift
R1240 T4814 T4812 prep from,gift
R1241 T4815 T4816 compound A.,Bradley
R1242 T4816 T4814 pobj Bradley,from
R1243 T4817 T4803 punct ),modified
R1244 T4818 T4803 prep by,modified
R1245 T4819 T4818 pcomp using,by
R1246 T4820 T4819 dobj oligonucleotides,using
R1247 T4821 T4822 aux to,destroy
R1248 T4822 T4819 advcl destroy,using
R1249 T4823 T4824 det a,site
R1250 T4824 T4822 dobj site,destroy
R1251 T4825 T4824 compound NotI,site
R1252 T4826 T4824 advmod downstream,site
R1253 T4827 T4826 prep of,downstream
R1254 T4828 T4829 det the,gene
R1255 T4829 T4827 pobj gene,of
R1256 T4830 T4829 compound puroΔTK,gene
R1257 T4831 T4822 cc and,destroy
R1258 T4832 T4822 conj introduce,destroy
R1259 T4833 T4834 det a,site
R1260 T4834 T4832 dobj site,introduce
R1261 T4835 T4834 compound NotI,site
R1262 T4836 T4832 advmod upstream,introduce
R1263 T4837 T4832 punct ", ",introduce
R1264 T4838 T4832 cc and,introduce
R1265 T4839 T4840 det a,site
R1266 T4840 T4832 conj site,introduce
R1267 T4841 T4840 compound FseI,site
R1268 T4842 T4840 advmod downstream,site

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4542 13-22 GO_SO_EXT:sequence_rearrangement_process denotes recombine
T4543 28-30 SO_EXT:wild_type_entity_or_quality denotes WT
T4544 31-35 SO_EXT:0000346 denotes loxP
T4545 72-76 CL_GO_EXT:cell denotes cell
T4546 109-119 SO_EXT:0000346 denotes loxP sites
T4547 181-186 CL_GO_EXT:cell denotes cells
T4548 240-245 CL_GO_EXT:cell denotes cells
T4549 262-269 SO_EXT:0000155 denotes plasmid
T4550 280-288 SO_EXT:sequence_alteration_process denotes modified
T4551 335-345 SO_EXT:0000346 denotes LoxP sites
T4552 358-365 SO_EXT:0000155 denotes plasmid
T4553 384-392 SO_EXT:sequence_alteration_process denotes modified
T4554 403-410 SO_EXT:0000155 denotes plasmid
T4555 457-473 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T4556 497-507 SO_EXT:sequence_downstreamness denotes downstream
T4557 523-527 SO_EXT:0000704 denotes gene
T4558 554-562 SO_EXT:sequence_upstreamness denotes upstream
T4559 580-590 SO_EXT:sequence_downstreamness denotes downstream

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4485 31-35 SO:0000346 denotes loxP
T4486 109-119 SO:0000346 denotes loxP sites
T4487 262-269 SO:0000155 denotes plasmid
T4488 335-345 SO:0000346 denotes LoxP sites
T4489 358-365 SO:0000155 denotes plasmid
T4490 403-410 SO:0000155 denotes plasmid
T4491 523-527 SO:0000704 denotes gene

2_test

Id Subject Object Predicate Lexical cue
16870721-16204450-76660902 247-249 16204450 denotes 14