PMC:1472690 / 7409-8948 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/1472690","sourcedb":"PMC","sourceid":"1472690","source_url":"http://www.ncbi.nlm.nih.gov/pmc/1472690","text":"Table 1 Sense strand of oligonucleotides used in EMSAs.\nOligonucleotidesa Base sequences (5'- XXX -3') binding site/cytokine gene promoter (position of the cytokine gene from the TSS)b\nNFκBcS GAT CCT CAG AGG GGA CTT TCCc GAT G NFκB consensus sequence/TNFα promoter [27]\nNFκB1S GAT CCT GGG ACA GCC CAG NFκB1 sequence/TNFα promoter [27]\nNFκB2S GAT CCG GGG TAT CCT G NFκB2 sequence/TNFα promoter [27]\nNFκB3S GAT CCT GGG TTT CTC CG NFκB3 sequence/TNFα promoter [27]\nIL-8κBcS ATC GTG GAA TTT CCT CTG A NFκB consensus sequence/IL-8 promoter [28]\nNFATP2S GAT CTA AAA TTT CCA GTC CTT GA NFATP2 sequence/IFNγ promoter [29]\nNFIL-6S TGC AGA TTG CGC AAT CTG CA NFIL-6 consensus sequence/IL-6 promoter [13]\nNFκBcS GCG AGG AGG GTA TTT CCG CTT between -80 and -100 NFκB consensus/IL-1RA promoter [30]\nNFκB3S ACA ACA GCA AGG GTT TCT CTT TTT GGA AAT between -100 and -130 NFκB3/IL-1RA promoter\nNFκBcS AGT AGG GAG TTT GGT between -266 and -280 NFκB consensus sequence/IL-1RA promoter\nNFκB2/3S ACT CTG GGT ACC TGT between -288 and -302 NFκB2/3 sequence/IL-1RA promoter\nNFATP2/3S GGC GCA CAA AAC CTA AAA TAT TTA CTA TCT between -471 and -500 NFATP2/3 sequence/IL-1RA promoter\nNFIL-6S TTA CAA CAC TCC ATT GCG ACA CTT AGT GGG between -140 and -170 NFIL-6 sequence/IL-1RA promoter [31]\nOct-1 DNAS AAT TGC ATT GCC TGC AGG TCG ACT CTA GAG GAT CCA TGC AAA TGG ATC CCC GGG TAC CGA GCT C exclusion of unspecific bindings, unrelated DNA, (Amersham Pharmacia)\n(a: S = sense; b: TSS = transcription start site;c: ___ = main binding 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