PMC:1472690 / 7409-8948 JSONTXT

{"project":"pmc-enju-pas","denotations":[{"id":"T26164","span":{"begin":9,"end":14},"obj":"NN"},{"id":"T26165","span":{"begin":15,"end":21},"obj":"NN"},{"id":"T26166","span":{"begin":22,"end":24},"obj":"IN"},{"id":"T26167","span":{"begin":25,"end":41},"obj":"NN"},{"id":"T26168","span":{"begin":42,"end":46},"obj":"VB"},{"id":"T26169","span":{"begin":47,"end":49},"obj":"IN"},{"id":"T26170","span":{"begin":50,"end":55},"obj":"NN"}],"relations":[{"id":"R17823","pred":"arg1Of","subj":"T26165","obj":"T26164"},{"id":"R17824","pred":"arg1Of","subj":"T26165","obj":"T26166"},{"id":"R17825","pred":"arg2Of","subj":"T26167","obj":"T26166"},{"id":"R17826","pred":"arg2Of","subj":"T26167","obj":"T26168"},{"id":"R17827","pred":"arg1Of","subj":"T26168","obj":"T26169"},{"id":"R17828","pred":"arg2Of","subj":"T26170","obj":"T26169"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Table 1 Sense strand of oligonucleotides used in EMSAs.\nOligonucleotidesa Base sequences (5'- XXX -3') binding site/cytokine gene promoter (position of the cytokine gene from the TSS)b\nNFκBcS GAT CCT CAG AGG GGA CTT TCCc GAT G NFκB consensus sequence/TNFα promoter [27]\nNFκB1S GAT CCT GGG ACA GCC CAG NFκB1 sequence/TNFα promoter [27]\nNFκB2S GAT CCG GGG TAT CCT G NFκB2 sequence/TNFα promoter [27]\nNFκB3S GAT CCT GGG TTT CTC CG NFκB3 sequence/TNFα promoter [27]\nIL-8κBcS ATC GTG GAA TTT CCT CTG A NFκB consensus sequence/IL-8 promoter [28]\nNFATP2S GAT CTA AAA TTT CCA GTC CTT GA NFATP2 sequence/IFNγ promoter [29]\nNFIL-6S TGC AGA TTG CGC AAT CTG CA NFIL-6 consensus sequence/IL-6 promoter [13]\nNFκBcS GCG AGG AGG GTA TTT CCG CTT between -80 and -100 NFκB consensus/IL-1RA promoter [30]\nNFκB3S ACA ACA GCA AGG GTT TCT CTT TTT GGA AAT between -100 and -130 NFκB3/IL-1RA promoter\nNFκBcS AGT AGG GAG TTT GGT between -266 and -280 NFκB consensus sequence/IL-1RA promoter\nNFκB2/3S ACT CTG GGT ACC TGT between -288 and -302 NFκB2/3 sequence/IL-1RA promoter\nNFATP2/3S GGC GCA CAA AAC CTA AAA TAT TTA CTA TCT between -471 and -500 NFATP2/3 sequence/IL-1RA promoter\nNFIL-6S TTA CAA CAC TCC ATT GCG ACA CTT AGT GGG between -140 and -170 NFIL-6 sequence/IL-1RA promoter [31]\nOct-1 DNAS AAT TGC ATT GCC TGC AGG TCG ACT CTA GAG GAT CCA TGC AAA TGG ATC CCC GGG TAC CGA GCT C exclusion of unspecific bindings, unrelated DNA, (Amersham Pharmacia)\n(a: S = sense; b: TSS = transcription start site;c: ___ = main binding motif)."}

{"project":"sentences","denotations":[{"id":"T26163","span":{"begin":9,"end":56},"obj":"Sentence"},{"id":"T50","span":{"begin":0,"end":56},"obj":"Sentence"},{"id":"T51","span":{"begin":57,"end":187},"obj":"Sentence"},{"id":"T52","span":{"begin":188,"end":274},"obj":"Sentence"},{"id":"T53","span":{"begin":275,"end":341},"obj":"Sentence"},{"id":"T54","span":{"begin":342,"end":406},"obj":"Sentence"},{"id":"T55","span":{"begin":407,"end":472},"obj":"Sentence"},{"id":"T56","span":{"begin":473,"end":552},"obj":"Sentence"},{"id":"T57","span":{"begin":553,"end":628},"obj":"Sentence"},{"id":"T58","span":{"begin":629,"end":710},"obj":"Sentence"},{"id":"T59","span":{"begin":711,"end":804},"obj":"Sentence"},{"id":"T60","span":{"begin":805,"end":897},"obj":"Sentence"},{"id":"T61","span":{"begin":898,"end":988},"obj":"Sentence"},{"id":"T62","span":{"begin":989,"end":1074},"obj":"Sentence"},{"id":"T63","span":{"begin":1075,"end":1182},"obj":"Sentence"},{"id":"T64","span":{"begin":1183,"end":1291},"obj":"Sentence"},{"id":"T65","span":{"begin":1292,"end":1460},"obj":"Sentence"},{"id":"T66","span":{"begin":1461,"end":1464},"obj":"Sentence"},{"id":"T67","span":{"begin":1465,"end":1539},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 1 Sense strand of oligonucleotides used in EMSAs.\nOligonucleotidesa Base sequences (5'- XXX -3') binding site/cytokine gene promoter (position of the cytokine gene from the TSS)b\nNFκBcS GAT CCT CAG AGG GGA CTT TCCc GAT G NFκB consensus sequence/TNFα promoter [27]\nNFκB1S GAT CCT GGG ACA GCC CAG NFκB1 sequence/TNFα promoter [27]\nNFκB2S GAT CCG GGG TAT CCT G NFκB2 sequence/TNFα promoter [27]\nNFκB3S GAT CCT GGG TTT CTC CG NFκB3 sequence/TNFα promoter [27]\nIL-8κBcS ATC GTG GAA TTT CCT CTG A NFκB consensus sequence/IL-8 promoter [28]\nNFATP2S GAT CTA AAA TTT CCA GTC CTT GA NFATP2 sequence/IFNγ promoter [29]\nNFIL-6S TGC AGA TTG CGC AAT CTG CA NFIL-6 consensus sequence/IL-6 promoter [13]\nNFκBcS GCG AGG AGG GTA TTT CCG CTT between -80 and -100 NFκB consensus/IL-1RA promoter [30]\nNFκB3S ACA ACA GCA AGG GTT TCT CTT TTT GGA AAT between -100 and -130 NFκB3/IL-1RA promoter\nNFκBcS AGT AGG GAG TTT GGT between -266 and -280 NFκB consensus sequence/IL-1RA promoter\nNFκB2/3S ACT CTG GGT ACC TGT between -288 and -302 NFκB2/3 sequence/IL-1RA promoter\nNFATP2/3S GGC GCA CAA AAC CTA AAA TAT TTA CTA TCT between -471 and -500 NFATP2/3 sequence/IL-1RA promoter\nNFIL-6S TTA CAA CAC TCC ATT GCG ACA CTT AGT GGG between -140 and -170 NFIL-6 sequence/IL-1RA promoter [31]\nOct-1 DNAS AAT TGC ATT GCC TGC AGG TCG ACT CTA GAG GAT CCA TGC AAA TGG ATC CCC GGG TAC CGA GCT C exclusion of unspecific bindings, unrelated DNA, (Amersham Pharmacia)\n(a: S = sense; b: TSS = transcription start site;c: ___ = main binding motif)."}

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T26179","span":{"begin":22,"end":41},"obj":"Entity"}],"text":"Table 1 Sense strand of oligonucleotides used in EMSAs.\nOligonucleotidesa Base sequences (5'- XXX -3') binding site/cytokine gene promoter (position of the cytokine gene from the TSS)b\nNFκBcS GAT CCT CAG AGG GGA CTT TCCc GAT G NFκB consensus sequence/TNFα promoter [27]\nNFκB1S GAT CCT GGG ACA GCC CAG NFκB1 sequence/TNFα promoter [27]\nNFκB2S GAT CCG GGG TAT CCT G NFκB2 sequence/TNFα promoter [27]\nNFκB3S GAT CCT GGG TTT CTC CG NFκB3 sequence/TNFα promoter [27]\nIL-8κBcS ATC GTG GAA TTT CCT CTG A NFκB consensus sequence/IL-8 promoter [28]\nNFATP2S GAT CTA AAA TTT CCA GTC CTT GA NFATP2 sequence/IFNγ promoter [29]\nNFIL-6S TGC AGA TTG CGC AAT CTG CA NFIL-6 consensus sequence/IL-6 promoter [13]\nNFκBcS GCG AGG AGG GTA TTT CCG CTT between -80 and -100 NFκB consensus/IL-1RA promoter [30]\nNFκB3S ACA ACA GCA AGG GTT TCT CTT TTT GGA AAT between -100 and -130 NFκB3/IL-1RA promoter\nNFκBcS AGT AGG GAG TTT GGT between -266 and -280 NFκB consensus sequence/IL-1RA promoter\nNFκB2/3S ACT CTG GGT ACC TGT between -288 and -302 NFκB2/3 sequence/IL-1RA promoter\nNFATP2/3S GGC GCA CAA AAC CTA AAA TAT TTA CTA TCT between -471 and -500 NFATP2/3 sequence/IL-1RA promoter\nNFIL-6S TTA CAA CAC TCC ATT GCG ACA CTT AGT GGG between -140 and -170 NFIL-6 sequence/IL-1RA promoter [31]\nOct-1 DNAS AAT TGC ATT GCC TGC AGG TCG ACT CTA GAG GAT CCA TGC AAA TGG ATC CCC GGG TAC CGA GCT C exclusion of unspecific bindings, unrelated DNA, (Amersham Pharmacia)\n(a: S = sense; b: TSS = transcription start site;c: ___ = main binding motif)."}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T26171","span":{"begin":9,"end":14},"obj":"NN"},{"id":"T26172","span":{"begin":15,"end":21},"obj":"NN"},{"id":"T26173","span":{"begin":22,"end":24},"obj":"IN"},{"id":"T26174","span":{"begin":25,"end":41},"obj":"NNS"},{"id":"T26175","span":{"begin":42,"end":46},"obj":"VBN"},{"id":"T26176","span":{"begin":47,"end":49},"obj":"IN"},{"id":"T26177","span":{"begin":50,"end":55},"obj":"NNS"},{"id":"T26178","span":{"begin":55,"end":56},"obj":"."}],"relations":[{"id":"R17829","pred":"compound","subj":"T26171","obj":"T26172"},{"id":"R17830","pred":"ROOT","subj":"T26172","obj":"T26172"},{"id":"R17831","pred":"prep","subj":"T26173","obj":"T26172"},{"id":"R17832","pred":"pobj","subj":"T26174","obj":"T26173"},{"id":"R17833","pred":"acl","subj":"T26175","obj":"T26174"},{"id":"R17834","pred":"prep","subj":"T26176","obj":"T26175"},{"id":"R17835","pred":"pobj","subj":"T26177","obj":"T26176"},{"id":"R17836","pred":"punct","subj":"T26178","obj":"T26172"}],"text":"Table 1 Sense strand of oligonucleotides used in EMSAs.\nOligonucleotidesa Base sequences (5'- XXX -3') binding site/cytokine gene promoter (position of the cytokine gene from the TSS)b\nNFκBcS GAT CCT CAG AGG GGA CTT TCCc GAT G NFκB consensus sequence/TNFα promoter [27]\nNFκB1S GAT CCT GGG ACA GCC CAG NFκB1 sequence/TNFα promoter [27]\nNFκB2S GAT CCG GGG TAT CCT G NFκB2 sequence/TNFα promoter [27]\nNFκB3S GAT CCT GGG TTT CTC CG NFκB3 sequence/TNFα promoter [27]\nIL-8κBcS ATC GTG GAA TTT CCT CTG A NFκB consensus sequence/IL-8 promoter [28]\nNFATP2S GAT CTA AAA TTT CCA GTC CTT GA NFATP2 sequence/IFNγ promoter [29]\nNFIL-6S TGC AGA TTG CGC AAT CTG CA NFIL-6 consensus sequence/IL-6 promoter [13]\nNFκBcS GCG AGG AGG GTA TTT CCG CTT between -80 and -100 NFκB consensus/IL-1RA promoter [30]\nNFκB3S ACA ACA GCA AGG GTT TCT CTT TTT GGA AAT between -100 and -130 NFκB3/IL-1RA promoter\nNFκBcS AGT AGG GAG TTT GGT between -266 and -280 NFκB consensus sequence/IL-1RA promoter\nNFκB2/3S ACT CTG GGT ACC TGT between -288 and -302 NFκB2/3 sequence/IL-1RA promoter\nNFATP2/3S GGC GCA CAA AAC CTA AAA TAT TTA CTA TCT between -471 and -500 NFATP2/3 sequence/IL-1RA promoter\nNFIL-6S TTA CAA CAC TCC ATT GCG ACA CTT AGT GGG between -140 and -170 NFIL-6 sequence/IL-1RA promoter [31]\nOct-1 DNAS AAT TGC ATT GCC TGC AGG TCG ACT CTA GAG GAT CCA TGC AAA TGG ATC CCC GGG TAC CGA GCT C exclusion of unspecific bindings, unrelated DNA, (Amersham Pharmacia)\n(a: S = sense; b: TSS = transcription start site;c: ___ = main binding motif)."}