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PMC:1472690 / 725-1114 JSONTXT

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bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T311 189-193 Protein denotes IL-8
T312 279-283 Protein denotes IL-8
T313 309-332 Protein denotes IL-1receptor antagonist
T314 333-335 Protein denotes RA
T307 39-44 Protein denotes IL-1β
T308 46-50 Protein denotes IL-6
T309 52-75 Protein denotes tumor necrosis factor α
T310 79-91 Protein denotes interferon γ

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T440 79-91 http://www.uniprot.org/uniprot/P01579 denotes interferon γ
T441 189-193 http://www.uniprot.org/uniprot/P10145 denotes IL-8
T442 279-283 http://www.uniprot.org/uniprot/P10145 denotes IL-8
T427 46-50 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T430 39-44 http://www.uniprot.org/uniprot/P01584 denotes IL-1β

GO-BP

Id Subject Object Predicate Lexical cue
T214 58-66 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T215 58-66 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T216 58-66 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T217 58-66 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-MF

Id Subject Object Predicate Lexical cue
T338 236-243 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T343 46-50 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T350 79-91 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon γ
T351 189-193 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8
T352 279-283 http://purl.obolibrary.org/obo/GO_0005153 denotes IL-8

sentences

Id Subject Object Predicate Lexical cue
T194 121-208 Sentence denotes Glucan phosphate-treated leukocytes induced a substantial amount of IL-8 (peak at 18 h:
T195 209-293 Sentence denotes 5000 pg/ml), likely due to binding of NFκB to a consensus site in the IL-8 promoter.
T196 294-362 Sentence denotes An increase in IL-1receptor antagonist(RA) production (peak at 24 h:
T8 121-208 Sentence denotes Glucan phosphate-treated leukocytes induced a substantial amount of IL-8 (peak at 18 h:
T9 209-293 Sentence denotes 5000 pg/ml), likely due to binding of NFκB to a consensus site in the IL-8 promoter.
T10 294-362 Sentence denotes An increase in IL-1receptor antagonist(RA) production (peak at 24 h:

simple1

Id Subject Object Predicate Lexical cue
T400 39-44 Protein denotes IL-1β
T401 46-50 Protein denotes IL-6
T402 52-75 Protein denotes tumor necrosis factor α
T403 79-91 Protein denotes interferon γ
T404 189-193 Protein denotes IL-8
T405 279-283 Protein denotes IL-8
T406 309-332 Protein denotes IL-1receptor antagonist
T407 333-335 Protein denotes RA

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T860 25-35 Gene_expression denotes production
T862 92-99 Positive_regulation denotes induced
T863 236-243 Binding denotes binding
T864 157-164 Positive_regulation denotes induced
T865 337-347 Gene_expression denotes production
T866 297-305 Positive_regulation denotes increase
T829 46-50 Protein denotes IL-6
T830 52-75 Protein denotes tumor necrosis factor α
T831 79-91 Protein denotes interferon γ
T835 39-44 Protein denotes IL-1β
T836 189-193 Protein denotes IL-8
T837 279-283 Protein denotes IL-8
T838 309-332 Protein denotes IL-1receptor antagonist
T839 333-335 Protein denotes RA
R211 T860 T862 themeOf production,induced
R212 T860 T862 themeOf production,induced
R213 T860 T862 themeOf production,induced
R214 T860 T862 themeOf production,induced
R215 T865 T866 themeOf production,increase
R216 T865 T866 themeOf production,increase
R338 T829 T860 themeOf IL-6,production
R339 T830 T860 themeOf tumor necrosis factor α,production
R340 T831 T860 themeOf interferon γ,production
R343 T835 T860 themeOf IL-1β,production
R344 T836 T864 themeOf IL-8,induced
R345 T837 T863 themeOf IL-8,binding
R346 T838 T865 themeOf IL-1receptor antagonist,production
R347 T839 T865 themeOf RA,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 92-99 Positive_regulation denotes induced
T487 25-35 Gene_expression denotes production
T489 157-164 Positive_regulation denotes induced
T490 236-243 Binding denotes binding
T491 337-347 Gene_expression denotes production
T492 297-305 Positive_regulation denotes increase
T455 46-50 Protein denotes IL-6
T456 52-75 Protein denotes tumor necrosis factor α
T457 79-91 Protein denotes interferon γ
T461 39-44 Protein denotes IL-1β
T462 189-193 Protein denotes IL-8
T463 279-283 Protein denotes IL-8
T464 309-332 Protein denotes IL-1receptor antagonist
T465 333-335 Protein denotes RA
R123 T487 T486 themeOf production,induced
R124 T487 T486 themeOf production,induced
R125 T487 T486 themeOf production,induced
R126 T487 T486 themeOf production,induced
R127 T491 T492 themeOf production,increase
R128 T491 T492 themeOf production,increase
R246 T455 T487 themeOf IL-6,production
R247 T456 T487 themeOf tumor necrosis factor α,production
R248 T457 T487 themeOf interferon γ,production
R249 T457 T486 themeOf interferon γ,induced
R252 T461 T487 themeOf IL-1β,production
R253 T461 T486 themeOf IL-1β,induced
R254 T462 T489 themeOf IL-8,induced
R255 T463 T490 themeOf IL-8,binding
R256 T464 T491 themeOf IL-1receptor antagonist,production
R257 T465 T491 themeOf RA,production

DLUT931

Id Subject Object Predicate Lexical cue
T607 25-35 Gene_expression denotes production
T608 92-99 Positive_regulation denotes induced
T609 157-164 Positive_regulation denotes induced
T610 236-243 Binding denotes binding
T611 337-347 Gene_expression denotes production
T612 297-305 Positive_regulation denotes increase
T575 46-50 Protein denotes IL-6
T576 52-75 Protein denotes tumor necrosis factor α
T577 79-91 Protein denotes interferon γ
T581 39-44 Protein denotes IL-1β
T582 189-193 Protein denotes IL-8
T583 279-283 Protein denotes IL-8
T584 309-332 Protein denotes IL-1receptor antagonist
T585 333-335 Protein denotes RA
R146 T610 T609 themeOf binding,induced
R148 T611 T612 themeOf production,increase
R307 T585 T611 themeOf RA,production
R142 T607 T608 themeOf production,induced
R143 T607 T608 themeOf production,induced
R144 T607 T608 themeOf production,induced
R145 T607 T608 themeOf production,induced
R147 T611 T612 themeOf production,increase
R298 T575 T607 themeOf IL-6,production
R299 T576 T607 themeOf tumor necrosis factor α,production
R300 T577 T607 themeOf interferon γ,production
R302 T581 T607 themeOf IL-1β,production
R303 T582 T609 themeOf IL-8,induced
R304 T582 T610 themeOf IL-8,binding
R305 T583 T610 themeOf IL-8,binding
R306 T584 T611 themeOf IL-1receptor antagonist,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 252-292 Entity denotes to a consensus site in the IL-8 promoter
T772 186-193 Protein denotes of IL-8
T773 52-75 Protein denotes tumor necrosis factor α
T786 275-292 Entity denotes the IL-8 promoter
T787 379-385 Entity denotes glucan
T789 79-119 Protein denotes interferon γ induced by glucan phosphate
T793 322-336 Entity denotes antagonist(RA)
T798 121-127 Entity denotes Glucan
T799 279-283 Protein denotes IL-8
T802 306-347 Protein denotes in IL-1receptor antagonist(RA) production
T809 309-313 Protein denotes IL-1
T812 79-119 Gene_expression denotes interferon γ induced by glucan phosphate
T813 79-119 Positive_regulation denotes interferon γ induced by glucan phosphate
T730 121-156 Entity denotes Glucan phosphate-treated leukocytes
T731 46-50 Protein denotes IL-6
T735 333-335 Protein denotes RA
T739 39-44 Protein denotes IL-1β
T743 128-145 Entity denotes phosphate-treated
T744 360-361 Entity denotes h
T749 100-119 Entity denotes by glucan phosphate
T750 206-207 Entity denotes h
T753 103-109 Entity denotes glucan
T754 244-251 Protein denotes of NFκB
T821 294-347 Positive_regulation denotes An increase in IL-1receptor antagonist(RA) production
T822 236-292 Binding denotes binding of NFκB to a consensus site in the IL-8 promoter
R199 T786 T799 partOf the IL-8 promoter,IL-8
R200 T789 T812 themeOf interferon γ induced by glucan phosphate,interferon γ induced by glucan phosphate
R201 T789 T813 themeOf interferon γ induced by glucan phosphate,interferon γ induced by glucan phosphate
R332 T749 T813 causeOf by glucan phosphate,interferon γ induced by glucan phosphate
R333 T754 T822 themeOf of NFκB,binding of NFκB to a consensus site in the IL-8 promoter

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T518 46-50 Protein denotes IL-6
T519 52-75 Protein denotes tumor necrosis factor α
T520 79-91 Protein denotes interferon γ
T517 39-44 Protein denotes IL-1β
T524 25-35 Gene_expression denotes production
T525 25-35 Gene_expression denotes production
T526 25-35 Gene_expression denotes production
T527 25-35 Gene_expression denotes production
T528 92-99 Positive_regulation denotes induced
T529 92-99 Positive_regulation denotes induced
T530 92-99 Positive_regulation denotes induced
T531 92-99 Positive_regulation denotes induced
T532 189-193 Protein denotes IL-8
T533 247-251 Protein denotes NFκB
T534 279-292 Protein denotes IL-8 promoter
T535 179-185 Gene_expression denotes amount
T536 236-243 Binding denotes binding
T537 236-243 Binding denotes binding
T538 157-164 Positive_regulation denotes induced
T539 309-321 Protein denotes IL-1receptor
R266 T517 T524 themeOf IL-1β,production
R267 T518 T525 themeOf IL-6,production
R268 T519 T526 themeOf tumor necrosis factor α,production
R269 T520 T527 themeOf interferon γ,production
R270 T524 T528 themeOf production,induced
R271 T525 T529 themeOf production,induced
R272 T526 T530 themeOf production,induced
R273 T527 T531 themeOf production,induced
R274 T532 T535 themeOf IL-8,amount
R275 T532 T536 themeOf IL-8,binding
R276 T533 T536 themeOf NFκB,binding
R277 T533 T537 themeOf NFκB,binding
R278 T534 T537 themeOf IL-8 promoter,binding
R279 T535 T538 themeOf amount,induced

testone

Id Subject Object Predicate Lexical cue
T43 39-44 Protein denotes IL-1β
T44 46-50 Protein denotes IL-6
T45 52-75 Protein denotes tumor necrosis factor α
T46 79-91 Protein denotes interferon γ
T47 189-193 Protein denotes IL-8
T48 279-283 Protein denotes IL-8
T49 309-332 Protein denotes IL-1receptor antagonist
T50 333-335 Protein denotes RA
T71 25-35 Gene_expression denotes production
T72 92-99 Positive_regulation denotes induced
T73 157-164 Positive_regulation denotes induced
T74 236-243 Binding denotes binding
T75 284-292 Entity denotes promoter
T76 297-305 Positive_regulation denotes increase
T77 322-332 Negative_regulation denotes antagonist
T78 337-347 Gene_expression denotes production
R2 T43 T71 themeOf IL-1β,production
R3 T44 T71 themeOf IL-6,production
R5 T46 T71 themeOf interferon γ,production
R6 T49 T78 themeOf IL-1receptor antagonist,production
R7 T50 T49 equivalentTo RA,IL-1receptor antagonist
R22 T71 T72 themeOf production,induced
R23 T75 T74 themeOf promoter,binding
R24 T75 T48 partOf promoter,IL-8
R25 T77 T76 themeOf antagonist,increase
R26 T78 T76 themeOf production,increase
R4 T45 T71 themeOf tumor necrosis factor α,production

test3

Id Subject Object Predicate Lexical cue
T104 39-44 Protein denotes IL-1β
T105 46-50 Protein denotes IL-6
T106 52-75 Protein denotes tumor necrosis factor α
T107 79-91 Protein denotes interferon γ
T108 189-193 Protein denotes IL-8
T109 279-283 Protein denotes IL-8
T110 309-332 Protein denotes IL-1receptor antagonist
T111 333-335 Protein denotes RA
T141 25-35 Gene_expression denotes production
T142 39-44 Protein denotes IL-1β
T143 46-50 Protein denotes IL-6
T144 52-75 Protein denotes tumor necrosis factor α
T145 79-91 Protein denotes interferon γ
T146 92-99 Positive_regulation denotes induced
T147 157-164 Positive_regulation denotes induced
T148 189-193 Protein denotes IL-8
T149 236-243 Binding denotes binding
T150 279-283 Protein denotes IL-8
T151 297-305 Positive_regulation denotes increase
T152 309-332 Protein denotes IL-1receptor antagonist
T153 333-335 Protein denotes RA
T154 337-347 Gene_expression denotes production
R45 T141 T146 themeOf production,induced
R46 T142 T141 themeOf IL-1β,production
R47 T143 T141 themeOf IL-6,production
R48 T144 T141 themeOf tumor necrosis factor α,production
R49 T145 T141 themeOf interferon γ,production
R50 T148 T149 themeOf IL-8,binding
R51 T148 T147 themeOf IL-8,induced
R52 T152 T154 themeOf IL-1receptor antagonist,production
R53 T153 T152 equivalentTo RA,IL-1receptor antagonist
R54 T154 T151 themeOf production,increase