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PMC:1472690 / 31899-32193 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14240 290-292 CD denotes 51
T14239 289-290 -LRB- denotes [
T14238 283-288 NN denotes parts
T14237 279-282 DT denotes all
T14236 276-278 IN denotes in
T14235 265-275 JJ denotes equivalent
T14234 261-264 RB denotes not
T14233 257-260 VB denotes are
T14232 251-256 WDT denotes which
T14231 243-250 NN denotes signals
T14230 240-242 IN denotes of
T14229 229-239 JJ denotes suggestive
T14228 227-228 -COMMA- denotes ,
T14227 216-227 NN denotes combination
T14226 213-215 IN denotes in
T14225 197-212 RB denotes synergistically
T14224 191-196 VB denotes acted
T14223 187-190 CC denotes and
T14222 178-186 NN denotes proteins
T14221 155-177 JJ denotes mechanisms/DNA-binding
T14220 145-154 JJ denotes different
T14219 137-144 IN denotes through
T14218 132-136 NN denotes gene
T14217 125-131 NN denotes IL-1RA
T14216 121-124 DT denotes the
T14215 111-120 VB denotes activated
T14214 97-110 NN denotes peptidoglycan
T14213 93-96 CC denotes and
T14212 89-92 NN denotes LPS
T14211 87-88 -COMMA- denotes ,
T14210 84-87 NN denotes PRR
T14209 76-83 JJ denotes similar
T14208 73-75 IN denotes of
T14207 69-72 NN denotes use
T14206 65-68 DT denotes the
T14205 57-64 IN denotes despite
T14204 52-56 IN denotes that
T14203 44-51 VB denotes showing
T14202 38-43 NN denotes study
T14201 30-37 DT denotes another
T14200 27-29 IN denotes by
T14199 17-26 VB denotes supported
T14198 14-16 VB denotes be
T14197 10-13 MD denotes may
T14196 5-9 NN denotes idea
T14195 0-4 DT denotes This
T14241 292-293 -RRB- denotes ]
R9328 T14196 T14199 arg2Of idea,supported
R9331 T14199 T14197 arg2Of supported,may
R9332 T14199 T14198 arg2Of supported,be
R9334 T14202 T14199 arg1Of study,supported
R9335 T14202 T14200 arg2Of study,by
R9336 T14202 T14201 arg1Of study,another
R9337 T14202 T14203 arg1Of study,showing
R9339 T14207 T14205 arg2Of use,despite
R9340 T14207 T14206 arg1Of use,the
R9341 T14207 T14208 arg1Of use,of
R9342 T14210 T14208 arg2Of PRR,of
R9343 T14210 T14209 arg1Of PRR,similar
R9345 T14212 T14213 arg1Of LPS,and
R9347 T14213 T14215 arg1Of and,activated
R9348 T14213 T14224 arg1Of and,acted
R9349 T14213 T14229 arg1Of and,suggestive
R9350 T14214 T14213 arg2Of peptidoglycan,and
R9352 T14215 T14219 arg1Of activated,through
R9353 T14215 T14223 arg1Of activated,and
R9354 T14218 T14215 arg2Of gene,activated
R9355 T14218 T14216 arg1Of gene,the
R9356 T14218 T14217 arg1Of gene,IL-1RA
R9358 T14222 T14219 arg2Of proteins,through
R9359 T14222 T14220 arg1Of proteins,different
R9360 T14222 T14221 arg1Of proteins,mechanisms/DNA-binding
R9361 T14223 T14203 arg2Of and,showing
R9362 T14223 T14204 arg1Of and,that
R9363 T14223 T14205 arg1Of and,despite
R9364 T14223 T14211 arg1Of and,","
R9365 T14223 T14228 arg1Of and,","
R9366 T14223 T14229 modOf and,suggestive
R9367 T14224 T14223 arg2Of acted,and
R9368 T14224 T14225 arg1Of acted,synergistically
R9369 T14224 T14226 arg1Of acted,in
R9371 T14227 T14226 arg2Of combination,in
R9373 T14229 T14230 arg1Of suggestive,of
R9374 T14231 T14230 arg2Of signals,of
R9375 T14231 T14232 arg1Of signals,which
R9376 T14231 T14233 arg1Of signals,are
R9377 T14231 T14235 arg1Of signals,equivalent
R9378 T14233 T14234 arg1Of are,not
R9379 T14233 T14239 arg1Of are,[
R9381 T14235 T14233 arg2Of equivalent,are
R9382 T14235 T14236 arg1Of equivalent,in
R9385 T14238 T14236 arg2Of parts,in
R9386 T14238 T14237 arg1Of parts,all
R9388 T14240 T14239 arg2Of 51,[
R9389 T14241 T14239 arg3Of ],[
R9325 T14196 T14195 arg1Of idea,This
R9326 T14196 T14197 arg1Of idea,may
R9327 T14196 T14198 arg1Of idea,be

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T12411 125-131 Protein denotes IL-1RA

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14276 125-131 http://www.uniprot.org/uniprot/P18510 denotes IL-1RA

GO-BP

Id Subject Object Predicate Lexical cue
T11909 243-250 http://purl.obolibrary.org/obo/GO_0023052 denotes signals

GO-MF

Id Subject Object Predicate Lexical cue
T12572 170-186 http://purl.obolibrary.org/obo/GO_0005515 denotes binding proteins
T12563 166-177 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA-binding
T12548 170-177 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T12576 97-110 http://purl.obolibrary.org/obo/GO_0009274 denotes peptidoglycan

sentences

Id Subject Object Predicate Lexical cue
T11891 0-294 Sentence denotes This idea may be supported by another study showing that despite the use of similar PRR, LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins and acted synergistically in combination, suggestive of signals which are not equivalent in all parts [51].
T221 0-294 Sentence denotes This idea may be supported by another study showing that despite the use of similar PRR, LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins and acted synergistically in combination, suggestive of signals which are not equivalent in all parts [51].

simple1

Id Subject Object Predicate Lexical cue
T12790 125-131 Protein denotes IL-1RA

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16685 111-120 Positive_regulation denotes activated
T16628 125-131 Protein denotes IL-1RA
R11428 T16628 T16685 themeOf IL-1RA,activated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T14504 111-120 Positive_regulation denotes activated
T14436 125-131 Protein denotes IL-1RA
R9662 T14436 T14504 themeOf IL-1RA,activated

DLUT931

Id Subject Object Predicate Lexical cue
T14686 111-120 Positive_regulation denotes activated
T14611 125-131 Protein denotes IL-1RA
R9659 T14611 T14686 themeOf IL-1RA,activated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16895 73-87 Protein denotes of similar PRR
T16892 166-186 Protein denotes DNA-binding proteins
T16764 89-92 Entity denotes LPS
T16718 125-131 Protein denotes IL-1RA
T16703 97-110 Entity denotes peptidoglycan
T16700 121-136 Protein denotes the IL-1RA gene
T16960 89-186 Positive_regulation denotes LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins
T16959 89-186 Positive_regulation denotes LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins
R11415 T16700 T16959 themeOf the IL-1RA gene,LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins
R11416 T16700 T16960 themeOf the IL-1RA gene,LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins
R11417 T16703 T16959 causeOf peptidoglycan,LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins
R11452 T16764 T16960 causeOf LPS,LPS and peptidoglycan activated the IL-1RA gene through different mechanisms/DNA-binding proteins

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16328 293-294 . denotes .
T16327 292-293 NNP denotes ]
T16326 290-292 CD denotes 51
T16325 289-290 NNP denotes [
T16324 283-288 NNS denotes parts
T16323 279-282 DT denotes all
T16322 276-278 IN denotes in
T16321 265-275 JJ denotes equivalent
T16320 261-264 RB denotes not
T16319 257-260 VBP denotes are
T16318 251-256 WDT denotes which
T16317 243-250 NNS denotes signals
T16316 240-242 IN denotes of
T16315 229-239 NN denotes suggestive
T16314 227-228 , denotes ,
T16313 216-227 NN denotes combination
T16312 213-215 IN denotes in
T16311 197-212 RB denotes synergistically
T16310 191-196 VBD denotes acted
T16309 187-190 CC denotes and
T16308 178-186 NNS denotes proteins
T16307 155-177 JJ denotes mechanisms/DNA-binding
T16306 145-154 JJ denotes different
T16305 137-144 IN denotes through
T16304 132-136 NN denotes gene
T16303 125-131 NNP denotes IL-1RA
T16302 121-124 DT denotes the
T16301 111-120 VBN denotes activated
T16300 97-110 JJ denotes peptidoglycan
T16299 93-96 CC denotes and
T16298 89-92 NNP denotes LPS
T16297 87-88 , denotes ,
T16296 84-87 NNP denotes PRR
T16295 76-83 JJ denotes similar
T16294 73-75 IN denotes of
T16293 69-72 NN denotes use
T16292 65-68 DT denotes the
T16291 57-64 IN denotes despite
T16290 52-56 IN denotes that
T16289 44-51 VBG denotes showing
T16288 38-43 NN denotes study
T16287 30-37 DT denotes another
T16286 27-29 IN denotes by
T16285 17-26 VBN denotes supported
T16284 14-16 VB denotes be
T16283 10-13 MD denotes may
T16282 5-9 NN denotes idea
T16281 0-4 DT denotes This
R11181 T16281 T16282 det This,idea
R11182 T16282 T16285 nsubjpass idea,supported
R11183 T16283 T16285 aux may,supported
R11185 T16284 T16285 auxpass be,supported
R11186 T16285 T16285 ROOT supported,supported
R11188 T16286 T16285 agent by,supported
R11190 T16287 T16288 det another,study
R11191 T16288 T16286 pobj study,by
R11193 T16289 T16288 acl showing,study
R11194 T16290 T16289 dobj that,showing
R11195 T16291 T16289 prep despite,showing
R11197 T16292 T16293 det the,use
R11198 T16293 T16291 pobj use,despite
R11199 T16294 T16293 prep of,use
R11201 T16295 T16296 amod similar,PRR
R11202 T16296 T16294 pobj PRR,of
R11204 T16297 T16296 punct ",",PRR
R11205 T16298 T16296 conj LPS,PRR
R11206 T16299 T16298 cc and,LPS
R11208 T16300 T16298 conj peptidoglycan,LPS
R11209 T16301 T16293 prep activated,use
R11210 T16302 T16304 det the,gene
R11212 T16303 T16304 compound IL-1RA,gene
R11213 T16304 T16301 dobj gene,activated
R11214 T16305 T16301 prep through,activated
R11215 T16306 T16308 amod different,proteins
R11216 T16307 T16308 amod mechanisms/DNA-binding,proteins
R11217 T16308 T16305 pobj proteins,through
R11219 T16309 T16301 cc and,activated
R11220 T16310 T16301 conj acted,activated
R11221 T16311 T16310 advmod synergistically,acted
R11223 T16312 T16310 prep in,acted
R11224 T16313 T16312 pobj combination,in
R11225 T16314 T16310 punct ",",acted
R11227 T16315 T16310 advcl suggestive,acted
R11228 T16316 T16315 prep of,suggestive
R11229 T16317 T16316 pobj signals,of
R11231 T16318 T16319 nsubj which,are
R11232 T16319 T16317 relcl are,signals
R11233 T16320 T16319 neg not,are
R11235 T16321 T16319 acomp equivalent,are
R11236 T16322 T16321 prep in,equivalent
R11237 T16323 T16324 det all,parts
R11239 T16324 T16322 pobj parts,in
R11240 T16325 T16327 nmod [,]
R11241 T16326 T16327 nummod 51,]
R11244 T16327 T16315 dep ],suggestive
R11245 T16328 T16285 punct .,supported

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T12514 97-110 Protein denotes peptidoglycan
T12513 89-92 Protein denotes LPS
T12512 84-87 Protein denotes PRR
T12516 111-120 Positive_regulation denotes activated
T12515 125-131 Protein denotes IL-1RA
T12517 111-120 Positive_regulation denotes activated
R7943 T12513 T12516 causeOf LPS,activated
R7944 T12514 T12517 causeOf peptidoglycan,activated
R7945 T12515 T12516 themeOf IL-1RA,activated
R7946 T12515 T12517 themeOf IL-1RA,activated

testone

Id Subject Object Predicate Lexical cue
T11460 125-131 Protein denotes IL-1RA
T11556 111-120 Positive_regulation denotes activated
R7488 T11460 T11556 themeOf IL-1RA,activated

test3

Id Subject Object Predicate Lexical cue
T11850 125-131 Protein denotes IL-1RA
T11849 111-120 Positive_regulation denotes activated
T11663 125-131 Protein denotes IL-1RA
R7634 T11850 T11849 themeOf IL-1RA,activated