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PMC:1472690 / 18-825 JSONTXT

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bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T299 51-55 Protein denotes IL-6
T300 101-106 Protein denotes IL-1β
T301 107-131 Protein denotes IL-1 receptor antagonist
T302 554-582 Protein denotes toxic shock syndrome toxin 1
T303 584-590 Protein denotes TSST-1
T304 650-669 Protein denotes NFinterleukin(IL)-6
T305 674-678 Protein denotes NFAT
T306 697-703 Protein denotes TSST-1
T307 746-751 Protein denotes IL-1β
T308 753-757 Protein denotes IL-6
T309 759-782 Protein denotes tumor necrosis factor α
T310 786-798 Protein denotes interferon γ

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T440 786-798 http://www.uniprot.org/uniprot/P01579 denotes interferon γ
T426 51-55 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T427 753-757 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T429 101-106 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T430 746-751 http://www.uniprot.org/uniprot/P01584 denotes IL-1β
T433 581-588 http://www.uniprot.org/uniprot/P06886 denotes 1 (TSST
T434 697-703 http://www.uniprot.org/uniprot/P06886 denotes TSST-1

UBERON-AE

Id Subject Object Predicate Lexical cue
T187 428-433 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T206 107-120 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1 receptor
T207 388-396 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T208 434-455 http://purl.obolibrary.org/obo/GO_0002449 denotes immune cells mediated
T209 434-455 http://purl.obolibrary.org/obo/GO_0002456 denotes immune cells mediated
T210 434-455 http://purl.obolibrary.org/obo/GO_0019724 denotes immune cells mediated
T211 434-455 http://purl.obolibrary.org/obo/GO_0002228 denotes immune cells mediated
T212 434-455 http://purl.obolibrary.org/obo/GO_0002443 denotes immune cells mediated
T213 434-455 http://purl.obolibrary.org/obo/GO_0001909 denotes immune cells mediated
T214 765-773 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T215 765-773 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T216 765-773 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T217 765-773 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis

GO-MF

Id Subject Object Predicate Lexical cue
T335 9-20 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T337 13-20 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T342 51-55 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T343 753-757 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T345 107-111 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1
T347 107-120 http://purl.obolibrary.org/obo/GO_0004908 denotes IL-1 receptor
T348 468-482 http://purl.obolibrary.org/obo/GO_0001872 denotes β-1→3-D-glucan
T350 786-798 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon γ

GO-CC

Id Subject Object Predicate Lexical cue
T356 441-446 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T189 148-158 Sentence denotes Background
T190 159-269 Sentence denotes β-1→3-D-glucans represent a pathogen-associated molecular pattern and are able to modify biological responses.
T191 270-592 Sentence denotes Employing a comprehensive methodological approach, the aim of our in vitro study was to elucidate novel molecular and cellular mechanisms of human peripheral blood immune cells mediated by a fungal β-1→3-D-glucan, i.e. glucan phosphate, in the presence of lipopolysaccharide (LPS) or toxic shock syndrome toxin 1 (TSST-1).
T192 594-601 Sentence denotes Results
T2 139-147 Sentence denotes Abstract
T3 148-158 Sentence denotes Background
T4 159-269 Sentence denotes β-1→3-D-glucans represent a pathogen-associated molecular pattern and are able to modify biological responses.
T5 270-592 Sentence denotes Employing a comprehensive methodological approach, the aim of our in vitro study was to elucidate novel molecular and cellular mechanisms of human peripheral blood immune cells mediated by a fungal β-1→3-D-glucan, i.e. glucan phosphate, in the presence of lipopolysaccharide (LPS) or toxic shock syndrome toxin 1 (TSST-1).
T6 594-601 Sentence denotes Results

ICD10

Id Subject Object Predicate Lexical cue
T333 554-574 http://purl.bioontology.org/ontology/ICD10/A48.3 denotes toxic shock syndrome
T334 560-565 http://purl.bioontology.org/ontology/ICD10/R57.9 denotes shock

simple1

Id Subject Object Predicate Lexical cue
T392 51-55 Protein denotes IL-6
T393 101-106 Protein denotes IL-1β
T394 107-131 Protein denotes IL-1 receptor antagonist
T395 554-582 Protein denotes toxic shock syndrome toxin 1
T396 584-590 Protein denotes TSST-1
T397 650-669 Protein denotes NFinterleukin(IL)-6
T398 674-678 Protein denotes NFAT
T399 697-703 Protein denotes TSST-1
T400 746-751 Protein denotes IL-1β
T401 753-757 Protein denotes IL-6
T402 759-782 Protein denotes tumor necrosis factor α
T403 786-798 Protein denotes interferon γ

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T859 13-20 Binding denotes binding
T860 732-742 Gene_expression denotes production
T861 613-623 Positive_regulation denotes activation
T862 799-806 Positive_regulation denotes induced
T824 51-55 Protein denotes IL-6
T825 101-106 Protein denotes IL-1β
T826 107-131 Protein denotes IL-1 receptor antagonist
T827 554-582 Protein denotes toxic shock syndrome toxin 1
T828 584-590 Protein denotes TSST-1
T829 753-757 Protein denotes IL-6
T830 759-782 Protein denotes tumor necrosis factor α
T831 786-798 Protein denotes interferon γ
T832 650-669 Protein denotes NFinterleukin(IL)-6
T833 674-678 Protein denotes NFAT
T834 697-703 Protein denotes TSST-1
T835 746-751 Protein denotes IL-1β
R211 T860 T862 themeOf production,induced
R212 T860 T862 themeOf production,induced
R213 T860 T862 themeOf production,induced
R214 T860 T862 themeOf production,induced
R337 T824 T859 themeOf IL-6,binding
R338 T829 T860 themeOf IL-6,production
R339 T830 T860 themeOf tumor necrosis factor α,production
R340 T831 T860 themeOf interferon γ,production
R341 T832 T861 themeOf NFinterleukin(IL)-6,activation
R342 T833 T861 themeOf NFAT,activation
R343 T835 T860 themeOf IL-1β,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T485 13-20 Binding denotes binding
T486 799-806 Positive_regulation denotes induced
T487 732-742 Gene_expression denotes production
T488 613-623 Positive_regulation denotes activation
T450 51-55 Protein denotes IL-6
T451 101-106 Protein denotes IL-1β
T452 107-131 Protein denotes IL-1 receptor antagonist
T453 554-582 Protein denotes toxic shock syndrome toxin 1
T454 584-590 Protein denotes TSST-1
T455 753-757 Protein denotes IL-6
T456 759-782 Protein denotes tumor necrosis factor α
T457 786-798 Protein denotes interferon γ
T458 650-669 Protein denotes NFinterleukin(IL)-6
T459 674-678 Protein denotes NFAT
T460 697-703 Protein denotes TSST-1
T461 746-751 Protein denotes IL-1β
R123 T487 T486 themeOf production,induced
R124 T487 T486 themeOf production,induced
R125 T487 T486 themeOf production,induced
R126 T487 T486 themeOf production,induced
R245 T450 T485 themeOf IL-6,binding
R246 T455 T487 themeOf IL-6,production
R247 T456 T487 themeOf tumor necrosis factor α,production
R248 T457 T487 themeOf interferon γ,production
R249 T457 T486 themeOf interferon γ,induced
R250 T458 T488 themeOf NFinterleukin(IL)-6,activation
R251 T459 T488 themeOf NFAT,activation
R252 T461 T487 themeOf IL-1β,production
R253 T461 T486 themeOf IL-1β,induced

DLUT931

Id Subject Object Predicate Lexical cue
T604 13-20 Binding denotes binding
T606 613-623 Positive_regulation denotes activation
T607 732-742 Gene_expression denotes production
T608 799-806 Positive_regulation denotes induced
T570 51-55 Protein denotes IL-6
T571 101-106 Protein denotes IL-1β
T572 107-131 Protein denotes IL-1 receptor antagonist
T573 554-582 Protein denotes toxic shock syndrome toxin 1
T574 584-590 Protein denotes TSST-1
T575 753-757 Protein denotes IL-6
T576 759-782 Protein denotes tumor necrosis factor α
T577 786-798 Protein denotes interferon γ
T578 650-669 Protein denotes NFinterleukin(IL)-6
T579 674-678 Protein denotes NFAT
T580 697-703 Protein denotes TSST-1
T581 746-751 Protein denotes IL-1β
R142 T607 T608 themeOf production,induced
R143 T607 T608 themeOf production,induced
R144 T607 T608 themeOf production,induced
R145 T607 T608 themeOf production,induced
R297 T570 T604 themeOf IL-6,binding
R298 T575 T607 themeOf IL-6,production
R299 T576 T607 themeOf tumor necrosis factor α,production
R300 T577 T607 themeOf interferon γ,production
R301 T579 T606 themeOf NFAT,activation
R302 T581 T607 themeOf IL-1β,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T761 489-495 Entity denotes glucan
T765 674-704 Protein denotes NFAT similar to LPS or TSST-1,
T767 697-703 Protein denotes TSST-1
T773 759-782 Protein denotes tumor necrosis factor α
T774 554-591 Protein denotes toxic shock syndrome toxin 1 (TSST-1)
T776 51-137 Protein denotes IL-6 leading to an anti-inflammatory shift of the IL-1β/IL-1 receptor antagonist ratio
T777 434-482 Entity denotes immune cells mediated by a fungal β-1→3-D-glucan
T778 584-590 Protein denotes TSST-1
T780 70-87 Entity denotes anti-inflammatory
T790 650-669 Protein denotes NFinterleukin(IL)-6
T792 523-550 Entity denotes of lipopolysaccharide (LPS)
T800 690-693 Entity denotes LPS
T804 546-549 Entity denotes LPS
T731 753-757 Protein denotes IL-6
T739 746-751 Protein denotes IL-1β
T740 489-591 Entity denotes glucan phosphate, in the presence of lipopolysaccharide (LPS) or toxic shock syndrome toxin 1 (TSST-1)
T741 101-111 Protein denotes IL-1β/IL-1
T742 121-131 Entity denotes antagonist
T745 112-120 Protein denotes receptor
T756 107-111 Protein denotes IL-1
T760 101-111 Protein denotes IL-1β/IL-1

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T507 24-46 Protein denotes nuclear factors κB, AT
T508 51-55 Protein denotes IL-6
T509 101-120 Protein denotes IL-1β/IL-1 receptor
T510 13-20 Binding denotes binding
T511 13-20 Binding denotes binding
T514 627-648 Protein denotes nuclear factor (NF)κB
T518 753-757 Protein denotes IL-6
T519 759-782 Protein denotes tumor necrosis factor α
T520 786-798 Protein denotes interferon γ
T521 613-623 Positive_regulation denotes activation
T522 613-623 Positive_regulation denotes activation
T523 613-623 Positive_regulation denotes activation
T515 650-669 Protein denotes NFinterleukin(IL)-6
T516 674-678 Protein denotes NFAT
T517 746-751 Protein denotes IL-1β
T524 732-742 Gene_expression denotes production
T525 732-742 Gene_expression denotes production
T526 732-742 Gene_expression denotes production
T527 732-742 Gene_expression denotes production
T528 799-806 Positive_regulation denotes induced
T529 799-806 Positive_regulation denotes induced
T530 799-806 Positive_regulation denotes induced
T531 799-806 Positive_regulation denotes induced
R259 T507 T510 themeOf "nuclear factors κB, AT",binding
R260 T508 T511 themeOf IL-6,binding
R263 T514 T521 themeOf nuclear factor (NF)κB,activation
R264 T515 T522 themeOf NFinterleukin(IL)-6,activation
R265 T516 T523 themeOf NFAT,activation
R266 T517 T524 themeOf IL-1β,production
R267 T518 T525 themeOf IL-6,production
R268 T519 T526 themeOf tumor necrosis factor α,production
R269 T520 T527 themeOf interferon γ,production
R270 T524 T528 themeOf production,induced
R271 T525 T529 themeOf production,induced
R272 T526 T530 themeOf production,induced
R273 T527 T531 themeOf production,induced

testone

Id Subject Object Predicate Lexical cue
T36 101-106 Protein denotes IL-1β
T37 107-131 Protein denotes IL-1 receptor antagonist
T38 554-582 Protein denotes toxic shock syndrome toxin 1
T39 584-590 Protein denotes TSST-1
T40 650-669 Protein denotes NFinterleukin(IL)-6
T41 674-678 Protein denotes NFAT
T42 697-703 Protein denotes TSST-1
T43 746-751 Protein denotes IL-1β
T44 753-757 Protein denotes IL-6
T45 759-782 Protein denotes tumor necrosis factor α
T46 786-798 Protein denotes interferon γ
T69 13-20 Binding denotes binding
T70 121-131 Negative_regulation denotes antagonist
T71 732-742 Gene_expression denotes production
T72 799-806 Positive_regulation denotes induced
T35 51-55 Protein denotes IL-6
R1 T39 T38 equivalentTo TSST-1,toxic shock syndrome toxin 1
R2 T43 T71 themeOf IL-1β,production
R3 T44 T71 themeOf IL-6,production
R5 T46 T71 themeOf interferon γ,production
R22 T71 T72 themeOf production,induced
R55 T35 T69 themeOf IL-6,binding
R4 T45 T71 themeOf tumor necrosis factor α,production

test3

Id Subject Object Predicate Lexical cue
T100 584-590 Protein denotes TSST-1
T101 650-669 Protein denotes NFinterleukin(IL)-6
T102 674-678 Protein denotes NFAT
T103 697-703 Protein denotes TSST-1
T104 746-751 Protein denotes IL-1β
T96 51-55 Protein denotes IL-6
T97 101-106 Protein denotes IL-1β
T98 107-131 Protein denotes IL-1 receptor antagonist
T99 554-582 Protein denotes toxic shock syndrome toxin 1
T105 753-757 Protein denotes IL-6
T106 759-782 Protein denotes tumor necrosis factor α
T107 786-798 Protein denotes interferon γ
T130 13-20 Binding denotes binding
T131 51-55 Protein denotes IL-6
T132 56-63 Positive_regulation denotes leading
T133 101-106 Protein denotes IL-1β
T134 107-131 Protein denotes IL-1 receptor antagonist
T135 554-582 Protein denotes toxic shock syndrome toxin 1
T136 584-590 Protein denotes TSST-1
T137 613-623 Positive_regulation denotes activation
T138 650-669 Protein denotes NFinterleukin(IL)-6
T139 674-678 Protein denotes NFAT
T140 697-703 Protein denotes TSST-1
T141 732-742 Gene_expression denotes production
T142 746-751 Protein denotes IL-1β
T143 753-757 Protein denotes IL-6
T144 759-782 Protein denotes tumor necrosis factor α
T145 786-798 Protein denotes interferon γ
T146 799-806 Positive_regulation denotes induced
R41 T136 T135 equivalentTo TSST-1,toxic shock syndrome toxin 1
R42 T138 T137 themeOf NFinterleukin(IL)-6,activation
R43 T139 T137 themeOf NFAT,activation
R44 T140 T137 themeOf TSST-1,activation
R45 T141 T146 themeOf production,induced
R46 T142 T141 themeOf IL-1β,production
R47 T143 T141 themeOf IL-6,production
R48 T144 T141 themeOf tumor necrosis factor α,production
R49 T145 T141 themeOf interferon γ,production
R40 T131 T130 themeOf IL-6,binding