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genomic DNA subclone of Strain 129/SvJ DNA that contained a portion of Exons 4 and 5 of the E2 gene and flanking DNA was obtained from a P1 phage library from Genome Systems, Inc., (St. Louis, MO; '3-Hit Mouse ES Library'). A positive/negative replacement type gene targeting vector [21] was created by replacing a 1.67 kb EcoRV-Smal fragment that included a portion of Exon 4 and all of Exon 5 with the PGKneo marker gene (See Fig. 1A) from the pPNT vector [22]. The targeting construct was linearized with NotI and electroporated into R1 ES cells [23] under conditions described previously [24]. ES cells were selected with G418 (300 μg/ml; Life Technologies Inc., Gaithersburg, MD) and gancyclovir (2 μM; gift of Syntex, Palo Alto, CA). Doubly resistant clones were screened for gene targeting by Southern blot analysis of BglI digested genomic DNA. Blots were hybridized with an Exon 6 specific probe that was external to the gene targeting construct. Correctly targeted ES cells were injected into C57BL/6J blastocysts to produce chimeric mice using standard procedures. Heterozygous offspring from germline competent chimeras were intercrossed to produce wild type (+/+), heterozygous (+/-) and homozygous knockout (-/-) mice. At all generations, +/- breeding pairs were used. Results presented here are from mice derived from the F2+ generations. All animals were of a mixed C57BL/6J × Strain 129Sv/SvJ genetic background."}

    craft-ca-core-ex-dev

    {"project":"craft-ca-core-ex-dev","denotations":[{"id":"T4969","span":{"begin":2,"end":13},"obj":"SO_EXT:genomic_DNA"},{"id":"T4970","span":{"begin":10,"end":13},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T4971","span":{"begin":41,"end":44},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T4972","span":{"begin":62,"end":78},"obj":"SO_EXT:0000852"},{"id":"T4973","span":{"begin":94,"end":96},"obj":"PR_EXT:000006300"},{"id":"T4974","span":{"begin":97,"end":101},"obj":"SO_EXT:0000704"},{"id":"T4975","span":{"begin":106,"end":114},"obj":"SO:0000357"},{"id":"T4976","span":{"begin":115,"end":118},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T4977","span":{"begin":139,"end":147},"obj":"NCBITaxon:10678"},{"id":"T4978","span":{"begin":161,"end":167},"obj":"SO_EXT:0001026"},{"id":"T4979","span":{"begin":206,"end":211},"obj":"NCBITaxon:10088"},{"id":"T4980","span":{"begin":212,"end":214},"obj":"CL:0002322"},{"id":"T4981","span":{"begin":246,"end":257},"obj":"SO_EXT:sequence_substitution_entity_or_process"},{"id":"T4982","span":{"begin":263,"end":267},"obj":"SO_EXT:0000704"},{"id":"T4983","span":{"begin":268,"end":284},"obj":"SO_EXT:0001644"},{"id":"T4984","span":{"begin":305,"end":314},"obj":"SO_EXT:sequence_substitution_process"},{"id":"T4985","span":{"begin":323,"end":324},"obj":"CHEBI_SO_EXT:base"},{"id":"T4986","span":{"begin":361,"end":376},"obj":"SO_EXT:0000852"},{"id":"T4987","span":{"begin":390,"end":394},"obj":"SO_EXT:0000147"},{"id":"T4988","span":{"begin":413,"end":419},"obj":"CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag"},{"id":"T4989","span":{"begin":420,"end":424},"obj":"SO_EXT:0000704"},{"id":"T4990","span":{"begin":453,"end":459},"obj":"SO_EXT:0000440"},{"id":"T4991","span":{"begin":480,"end":489},"obj":"SO_EXT:engineered_biological_sequence"},{"id":"T4992","span":{"begin":494,"end":504},"obj":"SO_EXT:sequence_linearization"},{"id":"T4993","span":{"begin":542,"end":550},"obj":"CL:0002322"},{"id":"T4994","span":{"begin":545,"end":550},"obj":"CL_GO_EXT:cell"},{"id":"T4995","span":{"begin":600,"end":608},"obj":"CL:0002322"},{"id":"T4996","span":{"begin":603,"end":608},"obj":"CL_GO_EXT:cell"},{"id":"T4997","span":{"begin":628,"end":632},"obj":"CHEBI:42768"},{"id":"T4998","span":{"begin":645,"end":649},"obj":"UBERON:0000104"},{"id":"T4999","span":{"begin":691,"end":702},"obj":"CHEBI:465284"},{"id":"T5000","span":{"begin":759,"end":765},"obj":"SO_EXT:sequence_cloned_entity"},{"id":"T5001","span":{"begin":784,"end":788},"obj":"SO_EXT:0000704"},{"id":"T5002","span":{"begin":842,"end":853},"obj":"SO_EXT:genomic_DNA"},{"id":"T5003","span":{"begin":850,"end":853},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T5004","span":{"begin":866,"end":876},"obj":"GO:0097617"},{"id":"T5005","span":{"begin":885,"end":889},"obj":"SO_EXT:0000147"},{"id":"T5006","span":{"begin":901,"end":906},"obj":"CHEBI_SO_EXT:molecular_probe"},{"id":"T5007","span":{"begin":932,"end":936},"obj":"SO_EXT:0000704"},{"id":"T5008","span":{"begin":947,"end":956},"obj":"SO_EXT:engineered_biological_sequence"},{"id":"T5009","span":{"begin":977,"end":985},"obj":"CL:0002322"},{"id":"T5010","span":{"begin":980,"end":985},"obj":"CL_GO_EXT:cell"},{"id":"T5011","span":{"begin":1014,"end":1025},"obj":"UBERON:0000358"},{"id":"T5012","span":{"begin":1046,"end":1050},"obj":"NCBITaxon:10088"},{"id":"T5013","span":{"begin":1163,"end":1172},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T5014","span":{"begin":1174,"end":1175},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T5015","span":{"begin":1176,"end":1177},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T5016","span":{"begin":1194,"end":1195},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T5017","span":{"begin":1196,"end":1197},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T5018","span":{"begin":1224,"end":1225},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T5019","span":{"begin":1226,"end":1227},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T5020","span":{"begin":1229,"end":1233},"obj":"NCBITaxon:10088"},{"id":"T5021","span":{"begin":1255,"end":1256},"obj":"SO_EXT:normal_or_wild_type_or_present"},{"id":"T5022","span":{"begin":1257,"end":1258},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T5023","span":{"begin":1259,"end":1267},"obj":"GO_EXT:breeding"},{"id":"T5024","span":{"begin":1317,"end":1321},"obj":"NCBITaxon:10088"},{"id":"T5025","span":{"begin":1360,"end":1367},"obj":"NCBITaxon:33208"},{"id":"T5026","span":{"begin":1412,"end":1419},"obj":"SO_EXT:0000704"}],"text":"A genomic DNA subclone of Strain 129/SvJ DNA that contained a portion of Exons 4 and 5 of the E2 gene and flanking DNA was obtained from a P1 phage library from Genome Systems, Inc., (St. Louis, MO; '3-Hit Mouse ES Library'). A positive/negative replacement type gene targeting vector [21] was created by replacing a 1.67 kb EcoRV-Smal fragment that included a portion of Exon 4 and all of Exon 5 with the PGKneo marker gene (See Fig. 1A) from the pPNT vector [22]. The targeting construct was linearized with NotI and electroporated into R1 ES cells [23] under conditions described previously [24]. ES cells were selected with G418 (300 μg/ml; Life Technologies Inc., Gaithersburg, MD) and gancyclovir (2 μM; gift of Syntex, Palo Alto, CA). Doubly resistant clones were screened for gene targeting by Southern blot analysis of BglI digested genomic DNA. Blots were hybridized with an Exon 6 specific probe that was external to the gene targeting construct. Correctly targeted ES cells were injected into C57BL/6J blastocysts to produce chimeric mice using standard procedures. Heterozygous offspring from germline competent chimeras were intercrossed to produce wild type (+/+), heterozygous (+/-) and homozygous knockout (-/-) mice. At all generations, +/- breeding pairs were used. Results presented here are from mice derived from the F2+ generations. All animals were of a mixed C57BL/6J × Strain 129Sv/SvJ genetic background."}

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T4936","span":{"begin":2,"end":9},"obj":"SO:0001026"},{"id":"T4937","span":{"begin":62,"end":78},"obj":"SO:0000852"},{"id":"T4938","span":{"begin":94,"end":96},"obj":"PR:000006300"},{"id":"T4939","span":{"begin":97,"end":101},"obj":"SO:0000704"},{"id":"T4940","span":{"begin":106,"end":114},"obj":"SO:0000357"},{"id":"T4941","span":{"begin":139,"end":147},"obj":"NCBITaxon:10678"},{"id":"T4942","span":{"begin":161,"end":167},"obj":"SO:0001026"},{"id":"T4943","span":{"begin":206,"end":211},"obj":"NCBITaxon:10088"},{"id":"T4944","span":{"begin":212,"end":214},"obj":"CL:0002322"},{"id":"T4945","span":{"begin":263,"end":267},"obj":"SO:0000704"},{"id":"T4946","span":{"begin":268,"end":284},"obj":"SO:0001644"},{"id":"T4947","span":{"begin":361,"end":376},"obj":"SO:0000852"},{"id":"T4948","span":{"begin":390,"end":394},"obj":"SO:0000147"},{"id":"T4949","span":{"begin":420,"end":424},"obj":"SO:0000704"},{"id":"T4950","span":{"begin":453,"end":459},"obj":"SO:0000440"},{"id":"T4951","span":{"begin":542,"end":550},"obj":"CL:0002322"},{"id":"T4952","span":{"begin":600,"end":608},"obj":"CL:0002322"},{"id":"T4953","span":{"begin":628,"end":632},"obj":"CHEBI:42768"},{"id":"T4954","span":{"begin":645,"end":649},"obj":"UBERON:0000104"},{"id":"T4955","span":{"begin":691,"end":702},"obj":"CHEBI:465284"},{"id":"T4956","span":{"begin":784,"end":788},"obj":"SO:0000704"},{"id":"T4957","span":{"begin":842,"end":849},"obj":"SO:0001026"},{"id":"T4958","span":{"begin":866,"end":876},"obj":"GO:0097617"},{"id":"T4959","span":{"begin":885,"end":889},"obj":"SO:0000147"},{"id":"T4960","span":{"begin":932,"end":936},"obj":"SO:0000704"},{"id":"T4961","span":{"begin":977,"end":985},"obj":"CL:0002322"},{"id":"T4962","span":{"begin":1014,"end":1025},"obj":"UBERON:0000358"},{"id":"T4963","span":{"begin":1046,"end":1050},"obj":"NCBITaxon:10088"},{"id":"T4964","span":{"begin":1229,"end":1233},"obj":"NCBITaxon:10088"},{"id":"T4965","span":{"begin":1317,"end":1321},"obj":"NCBITaxon:10088"},{"id":"T4966","span":{"begin":1360,"end":1367},"obj":"NCBITaxon:33208"},{"id":"T4967","span":{"begin":1412,"end":1419},"obj":"SO:0000704"}],"text":"A genomic DNA subclone of Strain 129/SvJ DNA that contained a portion of Exons 4 and 5 of the E2 gene and flanking DNA was obtained from a P1 phage library from Genome Systems, Inc., (St. Louis, MO; '3-Hit Mouse ES Library'). A positive/negative replacement type gene targeting vector [21] was created by replacing a 1.67 kb EcoRV-Smal fragment that included a portion of Exon 4 and all of Exon 5 with the PGKneo marker gene (See Fig. 1A) from the pPNT vector [22]. The targeting construct was linearized with NotI and electroporated into R1 ES cells [23] under conditions described previously [24]. ES cells were selected with G418 (300 μg/ml; Life Technologies Inc., Gaithersburg, MD) and gancyclovir (2 μM; gift of Syntex, Palo Alto, CA). Doubly resistant clones were screened for gene targeting by Southern blot analysis of BglI digested genomic DNA. Blots were hybridized with an Exon 6 specific probe that was external to the gene targeting construct. Correctly targeted ES cells were injected into C57BL/6J blastocysts to produce chimeric mice using standard procedures. Heterozygous offspring from germline competent chimeras were intercrossed to produce wild type (+/+), heterozygous (+/-) and homozygous knockout (-/-) mice. At all generations, +/- breeding pairs were used. Results presented here are from mice derived from the F2+ generations. All animals were of a mixed C57BL/6J × Strain 129Sv/SvJ genetic background."}