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PMC:1440874 / 7139-7510 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1641 4-8 WDT denotes that
T1642 9-16 VBD denotes removed
T1643 17-21 NN denotes exon
T1644 22-24 CD denotes 18
T1645 25-27 IN denotes of
T1646 28-31 DT denotes the
T1647 37-41 NN denotes gene
T1648 32-36 NN denotes Atrx
T1649 41-42 . denotes .
T1650 42-285 sentence denotes Exon 18 encodes the first of the seven motifs composing the conserved SNF2-like domain of Atrx (Figure 1); mutation of the corresponding motif of the yeast SNF2 protein has been shown to severely impair SWI/SNF-dependent gene expression [12].
T1651 43-47 NN denotes Exon
T1652 51-58 VBZ denotes encodes
T1653 48-50 CD denotes 18
T1654 221-226 VBN denotes shown
T1655 59-62 DT denotes the
T1656 63-68 JJ denotes first
T1657 69-71 IN denotes of
T1658 72-75 DT denotes the
T1659 82-88 NNS denotes motifs
T1660 76-81 CD denotes seven
T1661 89-98 VBG denotes composing
T1662 99-102 DT denotes the
T1663 123-129 NN denotes domain
T1664 103-112 VBN denotes conserved
T1665 113-117 NN denotes SNF2
T1666 118-122 JJ denotes like
T1667 117-118 HYPH denotes -
T1668 130-132 IN denotes of
T1669 133-137 NN denotes Atrx
T1670 138-139 -LRB- denotes (
T1671 139-145 NN denotes Figure
T1672 146-147 CD denotes 1
T1673 147-148 -RRB- denotes )
T1674 148-149 : denotes ;
T1675 150-158 NN denotes mutation
T1676 159-161 IN denotes of
T1677 162-165 DT denotes the
T1678 180-185 NN denotes motif
T1679 166-179 VBG denotes corresponding
T1680 186-188 IN denotes of
T1681 189-192 DT denotes the
T1682 204-211 NN denotes protein
T1683 193-198 NN denotes yeast
T1684 199-203 NN denotes SNF2
T1685 212-215 VBZ denotes has
T1686 216-220 VBN denotes been
T1687 227-229 TO denotes to
T1688 239-245 VB denotes impair
T1689 230-238 RB denotes severely
T1690 246-249 NN denotes SWI
T1691 250-253 NN denotes SNF
T1692 249-250 HYPH denotes /
T1693 254-263 JJ denotes dependent
T1694 253-254 HYPH denotes -
T1695 269-279 NN denotes expression
T1696 264-268 NN denotes gene
T1697 280-281 -LRB- denotes [
T1698 281-283 CD denotes 12
T1699 283-284 -RRB- denotes ]
T1700 284-285 . denotes .
T1702 286-289 DT denotes The
T1703 290-297 NN denotes failure
T1704 344-353 VBD denotes suggested
T1705 298-300 TO denotes to
T1706 301-308 VB denotes recover
T1707 309-317 VBN denotes targeted
T1708 318-324 NNS denotes clones
T1709 325-329 IN denotes with
T1710 330-335 DT denotes these
T1711 336-343 NNS denotes vectors
T1712 354-358 IN denotes that
T1713 368-370 VB denotes be
T1714 359-363 NN denotes Atrx
T1715 364-367 MD denotes may
R892 T1641 T1642 dep that,removed
R894 T1643 T1642 dobj exon,removed
R895 T1644 T1643 nummod 18,exon
R896 T1645 T1643 prep of,exon
R897 T1646 T1647 det the,gene
R898 T1647 T1645 pobj gene,of
R899 T1648 T1647 compound Atrx,gene
R901 T1651 T1652 nsubj Exon,encodes
R902 T1652 T1654 ccomp encodes,shown
R903 T1653 T1651 nummod 18,Exon
R904 T1655 T1656 det the,first
R905 T1656 T1652 dobj first,encodes
R906 T1657 T1656 prep of,first
R907 T1658 T1659 det the,motifs
R908 T1659 T1657 pobj motifs,of
R909 T1660 T1659 nummod seven,motifs
R910 T1661 T1656 acl composing,first
R911 T1662 T1663 det the,domain
R912 T1663 T1661 dobj domain,composing
R913 T1664 T1663 amod conserved,domain
R914 T1665 T1666 npadvmod SNF2,like
R915 T1666 T1663 amod like,domain
R916 T1667 T1666 punct -,like
R917 T1668 T1663 prep of,domain
R918 T1669 T1668 pobj Atrx,of
R919 T1670 T1671 punct (,Figure
R920 T1671 T1652 parataxis Figure,encodes
R921 T1672 T1671 nummod 1,Figure
R922 T1673 T1671 punct ),Figure
R923 T1674 T1654 punct ;,shown
R924 T1675 T1654 nsubjpass mutation,shown
R925 T1676 T1675 prep of,mutation
R926 T1677 T1678 det the,motif
R927 T1678 T1676 pobj motif,of
R928 T1679 T1678 amod corresponding,motif
R929 T1680 T1678 prep of,motif
R930 T1681 T1682 det the,protein
R931 T1682 T1680 pobj protein,of
R932 T1683 T1682 compound yeast,protein
R933 T1684 T1682 compound SNF2,protein
R934 T1685 T1654 aux has,shown
R935 T1686 T1654 auxpass been,shown
R936 T1687 T1688 aux to,impair
R937 T1688 T1654 xcomp impair,shown
R938 T1689 T1688 advmod severely,impair
R939 T1690 T1691 compound SWI,SNF
R940 T1691 T1693 npadvmod SNF,dependent
R941 T1692 T1691 punct /,SNF
R942 T1693 T1695 amod dependent,expression
R943 T1694 T1693 punct -,dependent
R944 T1695 T1688 dobj expression,impair
R945 T1696 T1695 compound gene,expression
R946 T1697 T1698 punct [,12
R947 T1698 T1654 parataxis 12,shown
R948 T1699 T1698 punct ],12
R949 T1700 T1654 punct .,shown
R950 T1702 T1703 det The,failure
R951 T1703 T1704 nsubj failure,suggested
R952 T1705 T1706 aux to,recover
R953 T1706 T1703 acl recover,failure
R954 T1707 T1708 amod targeted,clones
R955 T1708 T1706 dobj clones,recover
R956 T1709 T1706 prep with,recover
R957 T1710 T1711 det these,vectors
R958 T1711 T1709 pobj vectors,with
R959 T1712 T1713 mark that,be
R960 T1713 T1704 advcl be,suggested
R961 T1714 T1713 nsubj Atrx,be
R962 T1715 T1713 aux may,be

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1483 17-21 SO_EXT:0000147 denotes exon
T1484 32-36 PR_EXT:000004503 denotes Atrx
T1485 37-41 SO_EXT:0000704 denotes gene
T1486 43-47 SO_EXT:0000147 denotes Exon
T1487 51-58 SO_EXT:sequence_coding_function denotes encodes
T1488 82-88 SO_EXT:sequence_or_structure_motif denotes motifs
T1489 103-112 SO_EXT:biological_conservation_process_or_quality denotes conserved
T1490 113-117 PR_EXT:P22082 denotes SNF2
T1491 123-129 SO_EXT:0000417 denotes domain
T1492 133-137 PR_EXT:000004503 denotes Atrx
T1493 150-158 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T1494 180-185 SO_EXT:sequence_or_structure_motif denotes motif
T1495 193-198 NCBITaxon_EXT:yeast denotes yeast
T1496 199-203 PR_EXT:P22082 denotes SNF2
T1497 204-211 CHEBI_PR_EXT:protein denotes protein
T1498 246-253 GO:0016514 denotes SWI/SNF
T1499 264-268 SO_EXT:0000704 denotes gene
T1500 264-279 GO:0010467 denotes gene expression
T1501 318-324 SO_EXT:sequence_cloned_entity denotes clones
T1502 336-343 SO_EXT:0000440 denotes vectors
T1503 359-363 PR_EXT:000004503 denotes Atrx

2_test

Id Subject Object Predicate Lexical cue
16628246-8871545-85799746 281-283 8871545 denotes 12
T3548 281-283 8871545 denotes 12

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1403 17-21 SO:0000147 denotes exon
T1404 32-36 PR:000004503 denotes Atrx
T1405 37-41 SO:0000704 denotes gene
T1406 43-47 SO:0000147 denotes Exon
T1407 113-117 PR:P22082 denotes SNF2
T1408 123-129 SO:0000417 denotes domain
T1409 133-137 PR:000004503 denotes Atrx
T1410 199-203 PR:P22082 denotes SNF2
T1411 246-253 GO:0016514 denotes SWI/SNF
T1412 264-268 SO:0000704 denotes gene
T1413 264-279 GO:0010467 denotes gene expression
T1414 336-343 SO:0000440 denotes vectors
T1415 359-363 PR:000004503 denotes Atrx