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PMC:1435744 / 9160-10255 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T28655 0-4 PR_EXT:000014441 denotes mr-s
T28656 5-15 CHEBI_SO_EXT:nucleotide denotes nucleotide
T28657 20-30 CHEBI_SO_EXT:amino_acid denotes amino acid
T28658 31-40 SO_EXT:biological_sequence denotes sequences
T28659 46-50 PR_EXT:000014441 denotes mr-s
T28660 51-61 CHEBI_SO_EXT:nucleotide denotes nucleotide
T28661 66-77 CHEBI_SO_EXT:amino_acid denotes amino acids
T28662 78-87 SO_EXT:biological_sequence denotes sequences
T28663 95-106 CHEBI_SO_EXT:amino_acid denotes amino acids
T28664 119-125 SO_EXT:0000417 denotes domain
T28665 126-134 SO_EXT:biological_sequence denotes sequence
T28666 175-182 GO:0005634 denotes nuclear
T28667 175-202 SO_EXT:0001528 denotes nuclear localization signal
T28668 183-195 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T28669 239-254 GO:0043631 denotes polyadenylation
T28670 239-273 SO_EXT:0000551 denotes polyadenylation termination signal
T28671 296-302 SO_EXT:0000417 denotes domain
T28672 303-312 SO_EXT:biological_sequence denotes sequences
T28673 321-327 SO_EXT:0000417 denotes domain
T28674 339-347 CHEBI_PR_EXT:protein denotes proteins
T28675 358-371 SO_EXT:0001117 denotes alpha helices
T28676 390-399 SO_EXT:biological_conservation_process_or_quality denotes Conserved
T28677 400-410 CHEBI_SO_EXT:amino_acid denotes amino acid
T28678 411-419 CHEBI_EXT:residue denotes residues
T28679 474-482 CHEBI_EXT:residue denotes residues
T28680 547-558 SO_EXT:sequence_alteration_process denotes mutagenesis
T28681 613-619 SO_EXT:0000417 denotes domain
T28682 631-639 CHEBI_PR_EXT:protein denotes proteins
T28683 641-651 CHEBI_SO_EXT:amino_acid denotes Amino acid
T28684 652-661 SO_EXT:biological_sequence denotes sequences
T28685 767-780 SO_EXT:sequence_substitution_entity_or_process denotes substitutions
T28686 823-833 CHEBI_SO_EXT:amino_acid denotes amino acid
T28687 834-843 SO_EXT:biological_sequence denotes sequences
T28688 848-853 NCBITaxon:10088 denotes mouse
T28689 855-858 NCBITaxon:10114 denotes rat
T28690 860-865 NCBITaxon:9606 denotes human
T28691 867-872 NCBITaxon_UBERON_EXT:chick denotes chick
T28692 877-886 NCBITaxon:7955 denotes zebrafish
T28693 887-891 PR_EXT:000014441 denotes mr-s
T28694 892-900 CHEBI_PR_EXT:protein denotes proteins
T28695 936-943 SO_EXT:0000417 denotes domains
T28696 998-1003 NCBITaxon:10088 denotes mouse
T28697 1004-1011 CHEBI_PR_EXT:protein denotes protein
T28698 1030-1038 SO_EXT:biological_sequence denotes sequence
T28699 1059-1064 NCBITaxon:10088 denotes mouse
T28700 1065-1072 CHEBI_PR_EXT:protein denotes protein

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T28636 0-4 PR:000014441 denotes mr-s
T28637 46-50 PR:000014441 denotes mr-s
T28638 119-125 SO:0000417 denotes domain
T28639 175-182 GO:0005634 denotes nuclear
T28640 175-202 SO:0001528 denotes nuclear localization signal
T28641 239-254 GO:0043631 denotes polyadenylation
T28642 239-273 SO:0000551 denotes polyadenylation termination signal
T28643 296-302 SO:0000417 denotes domain
T28644 321-327 SO:0000417 denotes domain
T28645 358-371 SO:0001117 denotes alpha helices
T28646 613-619 SO:0000417 denotes domain
T28647 848-853 NCBITaxon:10088 denotes mouse
T28648 855-858 NCBITaxon:10114 denotes rat
T28649 860-865 NCBITaxon:9606 denotes human
T28650 877-886 NCBITaxon:7955 denotes zebrafish
T28651 887-891 PR:000014441 denotes mr-s
T28652 936-943 SO:0000417 denotes domains
T28653 998-1003 NCBITaxon:10088 denotes mouse
T28654 1059-1064 NCBITaxon:10088 denotes mouse

craft-sa-dev

Id Subject Object Predicate Lexical cue
T28701 0-2 NN denotes mr
T28702 3-4 NN denotes s
T28703 2-3 HYPH denotes -
T28704 5-15 NN denotes nucleotide
T28705 31-40 NNS denotes sequences
T28706 16-19 CC denotes and
T28707 20-25 NN denotes amino
T28708 26-30 NN denotes acid
T28709 40-41 . denotes .
T28710 41-88 sentence denotes (A) mr-s nucleotide and amino acids sequences.
T28711 42-43 -LRB- denotes (
T28712 43-44 LS denotes A
T28713 78-87 NNS denotes sequences
T28714 44-45 -RRB- denotes )
T28715 46-48 NN denotes mr
T28716 49-50 NN denotes s
T28717 48-49 HYPH denotes -
T28718 51-61 NN denotes nucleotide
T28719 62-65 CC denotes and
T28720 66-71 NN denotes amino
T28721 72-77 NNS denotes acids
T28722 87-88 . denotes .
T28723 88-203 sentence denotes Boxed amino acids are the SAM domain sequence and the dashed box indicates a putative nuclear localization signal.
T28724 89-94 VBN denotes Boxed
T28725 101-106 NNS denotes acids
T28726 95-100 NN denotes amino
T28727 107-110 VBP denotes are
T28728 111-114 DT denotes the
T28729 126-134 NN denotes sequence
T28730 115-118 NN denotes SAM
T28731 119-125 NN denotes domain
T28732 135-138 CC denotes and
T28733 139-142 DT denotes the
T28734 150-153 NN denotes box
T28735 143-149 JJ denotes dashed
T28736 154-163 VBZ denotes indicates
T28737 164-165 DT denotes a
T28738 196-202 NN denotes signal
T28739 166-174 JJ denotes putative
T28740 175-182 JJ denotes nuclear
T28741 183-195 NN denotes localization
T28742 202-203 . denotes .
T28743 203-274 sentence denotes The underline indicates a putative polyadenylation termination signal.
T28744 204-207 DT denotes The
T28745 208-217 NN denotes underline
T28746 218-227 VBZ denotes indicates
T28747 228-229 DT denotes a
T28748 267-273 NN denotes signal
T28749 230-238 JJ denotes putative
T28750 239-254 NN denotes polyadenylation
T28751 255-266 NN denotes termination
T28752 273-274 . denotes .
T28753 274-348 sentence denotes (B) Alignment of SAM domain sequences for SAM domain-containing proteins.
T28754 275-276 -LRB- denotes (
T28755 276-277 LS denotes B
T28756 279-288 NN denotes Alignment
T28757 277-278 -RRB- denotes )
T28758 289-291 IN denotes of
T28759 292-295 NN denotes SAM
T28760 296-302 NN denotes domain
T28761 303-312 NNS denotes sequences
T28762 313-316 IN denotes for
T28763 317-320 NN denotes SAM
T28764 321-327 NN denotes domain
T28765 328-338 VBG denotes containing
T28766 327-328 HYPH denotes -
T28767 339-347 NN denotes proteins
T28768 347-348 . denotes .
T28769 348-389 sentence denotes The five alpha helices are marked H1-H5.
T28770 349-352 DT denotes The
T28771 364-371 NNS denotes helices
T28772 353-357 CD denotes five
T28773 358-363 NN denotes alpha
T28774 376-382 VBN denotes marked
T28775 372-375 VBP denotes are
T28776 383-385 NN denotes H1
T28777 385-386 SYM denotes -
T28778 386-388 NN denotes H5
T28779 388-389 . denotes .
T28780 389-513 sentence denotes Conserved amino acid residues are shown with a dark shadow and functionally similar residues are shown with a light shadow.
T28781 390-399 VBN denotes Conserved
T28782 411-419 NNS denotes residues
T28783 400-405 NN denotes amino
T28784 406-410 NN denotes acid
T28785 424-429 VBN denotes shown
T28786 420-423 VBP denotes are
T28787 430-434 IN denotes with
T28788 435-436 DT denotes a
T28789 442-448 NN denotes shadow
T28790 437-441 JJ denotes dark
T28791 449-452 CC denotes and
T28792 453-465 RB denotes functionally
T28793 466-473 JJ denotes similar
T28794 474-482 NNS denotes residues
T28795 487-492 VBN denotes shown
T28796 483-486 VBP denotes are
T28797 493-497 IN denotes with
T28798 498-499 DT denotes a
T28799 506-512 NN denotes shadow
T28800 500-505 JJ denotes light
T28801 512-513 . denotes .
T28802 513-583 sentence denotes The sites that were targeted for mutagenesis are indicated by arrows.
T28803 514-517 DT denotes The
T28804 518-523 NNS denotes sites
T28805 563-572 VBN denotes indicated
T28806 524-528 WDT denotes that
T28807 534-542 VBN denotes targeted
T28808 529-533 VBD denotes were
T28809 543-546 IN denotes for
T28810 547-558 NN denotes mutagenesis
T28811 559-562 VBP denotes are
T28812 573-575 IN denotes by
T28813 576-582 NNS denotes arrows
T28814 582-583 . denotes .
T28815 583-640 sentence denotes (C) Phylogenetic tree of SAM domain-containing proteins.
T28816 584-585 -LRB- denotes (
T28817 585-586 LS denotes C
T28818 601-605 NN denotes tree
T28819 586-587 -RRB- denotes )
T28820 588-600 JJ denotes Phylogenetic
T28821 606-608 IN denotes of
T28822 609-612 NN denotes SAM
T28823 613-619 NN denotes domain
T28824 620-630 VBG denotes containing
T28825 619-620 HYPH denotes -
T28826 631-639 NN denotes proteins
T28827 639-640 . denotes .
T28828 640-724 sentence denotes Amino acid sequences were analyzed by the neighbor-joining method in MacVector 7.2.
T28829 641-646 NN denotes Amino
T28830 647-651 NN denotes acid
T28831 652-661 NNS denotes sequences
T28832 667-675 VBN denotes analyzed
T28833 662-666 VBD denotes were
T28834 676-678 IN denotes by
T28835 679-682 DT denotes the
T28836 700-706 NN denotes method
T28837 683-691 NN denotes neighbor
T28838 692-699 VBG denotes joining
T28839 691-692 HYPH denotes -
T28840 707-709 IN denotes in
T28841 710-719 NNP denotes MacVector
T28842 720-723 CD denotes 7.2
T28843 723-724 . denotes .
T28844 724-790 sentence denotes Branch lengths reflect the mean number of substitutions per site.
T28845 725-731 NN denotes Branch
T28846 732-739 NNS denotes lengths
T28847 740-747 VBP denotes reflect
T28848 748-751 DT denotes the
T28849 757-763 NN denotes number
T28850 752-756 NN denotes mean
T28851 764-766 IN denotes of
T28852 767-780 NNS denotes substitutions
T28853 781-784 IN denotes per
T28854 785-789 NN denotes site
T28855 789-790 . denotes .
T28856 790-901 sentence denotes (D) Schematic comparison of the amino acid sequences for mouse, rat, human, chick and zebrafish mr-s proteins.
T28857 791-792 -LRB- denotes (
T28858 792-793 LS denotes D
T28859 805-815 NN denotes comparison
T28860 793-794 -RRB- denotes )
T28861 795-804 JJ denotes Schematic
T28862 816-818 IN denotes of
T28863 819-822 DT denotes the
T28864 834-843 NNS denotes sequences
T28865 823-828 NN denotes amino
T28866 829-833 NN denotes acid
T28867 844-847 IN denotes for
T28868 848-853 NN denotes mouse
T28869 892-900 NN denotes proteins
T28870 853-855 , denotes ,
T28871 855-858 NN denotes rat
T28872 858-860 , denotes ,
T28873 860-865 JJ denotes human
T28874 865-867 , denotes ,
T28875 867-872 NN denotes chick
T28876 873-876 CC denotes and
T28877 877-886 NN denotes zebrafish
T28878 887-889 NN denotes mr
T28879 890-891 NN denotes s
T28880 889-890 HYPH denotes -
T28881 900-901 . denotes .
T28882 901-1021 sentence denotes The percent similarity of the SAM domains and other regions to the corresponding regions of the mouse protein is shown.
T28883 902-905 DT denotes The
T28884 914-924 NN denotes similarity
T28885 906-913 NN denotes percent
T28886 1015-1020 VBN denotes shown
T28887 925-927 IN denotes of
T28888 928-931 DT denotes the
T28889 936-943 NNS denotes domains
T28890 932-935 NN denotes SAM
T28891 944-947 CC denotes and
T28892 948-953 JJ denotes other
T28893 954-961 NNS denotes regions
T28894 962-964 IN denotes to
T28895 965-968 DT denotes the
T28896 983-990 NNS denotes regions
T28897 969-982 VBG denotes corresponding
T28898 991-993 IN denotes of
T28899 994-997 DT denotes the
T28900 1004-1011 NN denotes protein
T28901 998-1003 NN denotes mouse
T28902 1012-1014 VBZ denotes is
T28903 1020-1021 . denotes .
T28904 1021-1095 sentence denotes Overall sequence similarity with the mouse protein is shown on the right.
T28905 1022-1029 JJ denotes Overall
T28906 1039-1049 NN denotes similarity
T28907 1030-1038 NN denotes sequence
T28908 1076-1081 VBN denotes shown
T28909 1050-1054 IN denotes with
T28910 1055-1058 DT denotes the
T28911 1065-1072 NN denotes protein
T28912 1059-1064 NN denotes mouse
T28913 1073-1075 VBZ denotes is
T28914 1082-1084 IN denotes on
T28915 1085-1088 DT denotes the
T28916 1089-1094 NN denotes right
T28917 1094-1095 . denotes .
R8157 T28701 T28702 nmod mr,s
R8158 T28702 T28704 nmod s,nucleotide
R8159 T28703 T28702 punct -,s
R8160 T28704 T28705 nmod nucleotide,sequences
R8161 T28706 T28704 cc and,nucleotide
R8162 T28707 T28708 compound amino,acid
R8163 T28708 T28704 conj acid,nucleotide
R8164 T28709 T28705 punct .,sequences
R8165 T28711 T28712 punct (,A
R8166 T28712 T28713 meta A,sequences
R8167 T28714 T28712 punct ),A
R8168 T28715 T28716 nmod mr,s
R8169 T28716 T28718 nmod s,nucleotide
R8170 T28717 T28716 punct -,s
R8171 T28718 T28713 nmod nucleotide,sequences
R8172 T28719 T28718 cc and,nucleotide
R8173 T28720 T28721 compound amino,acids
R8174 T28721 T28718 conj acids,nucleotide
R8175 T28722 T28713 punct .,sequences
R8176 T28724 T28725 amod Boxed,acids
R8177 T28725 T28727 nsubj acids,are
R8178 T28726 T28725 compound amino,acids
R8179 T28728 T28729 det the,sequence
R8180 T28729 T28727 attr sequence,are
R8181 T28730 T28731 compound SAM,domain
R8182 T28731 T28729 compound domain,sequence
R8183 T28732 T28727 cc and,are
R8184 T28733 T28734 det the,box
R8185 T28734 T28736 nsubj box,indicates
R8186 T28735 T28734 amod dashed,box
R8187 T28736 T28727 conj indicates,are
R8188 T28737 T28738 det a,signal
R8189 T28738 T28736 dobj signal,indicates
R8190 T28739 T28738 amod putative,signal
R8191 T28740 T28741 amod nuclear,localization
R8192 T28741 T28738 compound localization,signal
R8193 T28742 T28736 punct .,indicates
R8194 T28744 T28745 det The,underline
R8195 T28745 T28746 nsubj underline,indicates
R8196 T28747 T28748 det a,signal
R8197 T28748 T28746 dobj signal,indicates
R8198 T28749 T28748 amod putative,signal
R8199 T28750 T28751 compound polyadenylation,termination
R8200 T28751 T28748 compound termination,signal
R8201 T28752 T28746 punct .,indicates
R8202 T28754 T28755 punct (,B
R8203 T28755 T28756 meta B,Alignment
R8204 T28757 T28755 punct ),B
R8205 T28758 T28756 prep of,Alignment
R8206 T28759 T28760 compound SAM,domain
R8207 T28760 T28761 compound domain,sequences
R8208 T28761 T28758 pobj sequences,of
R8209 T28762 T28761 prep for,sequences
R8210 T28763 T28764 compound SAM,domain
R8211 T28764 T28765 npadvmod domain,containing
R8212 T28765 T28767 amod containing,proteins
R8213 T28766 T28765 punct -,containing
R8214 T28767 T28762 pobj proteins,for
R8215 T28768 T28756 punct .,Alignment
R8216 T28770 T28771 det The,helices
R8217 T28771 T28774 nsubjpass helices,marked
R8218 T28772 T28771 nummod five,helices
R8219 T28773 T28771 compound alpha,helices
R8220 T28775 T28774 auxpass are,marked
R8221 T28776 T28774 oprd H1,marked
R8222 T28777 T28778 punct -,H5
R8223 T28778 T28776 prep H5,H1
R8224 T28779 T28774 punct .,marked
R8225 T28781 T28782 amod Conserved,residues
R8226 T28782 T28785 nsubjpass residues,shown
R8227 T28783 T28784 compound amino,acid
R8228 T28784 T28782 compound acid,residues
R8229 T28786 T28785 auxpass are,shown
R8230 T28787 T28785 prep with,shown
R8231 T28788 T28789 det a,shadow
R8232 T28789 T28787 pobj shadow,with
R8233 T28790 T28789 amod dark,shadow
R8234 T28791 T28785 cc and,shown
R8235 T28792 T28793 advmod functionally,similar
R8236 T28793 T28794 amod similar,residues
R8237 T28794 T28795 nsubjpass residues,shown
R8238 T28795 T28785 conj shown,shown
R8239 T28796 T28795 auxpass are,shown
R8240 T28797 T28795 prep with,shown
R8241 T28798 T28799 det a,shadow
R8242 T28799 T28797 pobj shadow,with
R8243 T28800 T28799 amod light,shadow
R8244 T28801 T28795 punct .,shown
R8245 T28803 T28804 det The,sites
R8246 T28804 T28805 nsubjpass sites,indicated
R8247 T28806 T28807 dep that,targeted
R8248 T28807 T28804 relcl targeted,sites
R8249 T28808 T28807 auxpass were,targeted
R8250 T28809 T28807 prep for,targeted
R8251 T28810 T28809 pobj mutagenesis,for
R8252 T28811 T28805 auxpass are,indicated
R8253 T28812 T28805 prep by,indicated
R8254 T28813 T28812 pobj arrows,by
R8255 T28814 T28805 punct .,indicated
R8256 T28816 T28817 punct (,C
R8257 T28817 T28818 meta C,tree
R8258 T28819 T28817 punct ),C
R8259 T28820 T28818 amod Phylogenetic,tree
R8260 T28821 T28818 prep of,tree
R8261 T28822 T28823 compound SAM,domain
R8262 T28823 T28824 npadvmod domain,containing
R8263 T28824 T28826 amod containing,proteins
R8264 T28825 T28824 punct -,containing
R8265 T28826 T28821 pobj proteins,of
R8266 T28827 T28818 punct .,tree
R8267 T28829 T28830 compound Amino,acid
R8268 T28830 T28831 compound acid,sequences
R8269 T28831 T28832 nsubjpass sequences,analyzed
R8270 T28833 T28832 auxpass were,analyzed
R8271 T28834 T28832 prep by,analyzed
R8272 T28835 T28836 det the,method
R8273 T28836 T28834 pobj method,by
R8274 T28837 T28838 npadvmod neighbor,joining
R8275 T28838 T28836 amod joining,method
R8276 T28839 T28838 punct -,joining
R8277 T28840 T28832 prep in,analyzed
R8278 T28841 T28840 pobj MacVector,in
R8279 T28842 T28841 nummod 7.2,MacVector
R8280 T28843 T28832 punct .,analyzed
R8281 T28845 T28846 compound Branch,lengths
R8282 T28846 T28847 nsubj lengths,reflect
R8283 T28848 T28849 det the,number
R8284 T28849 T28847 dobj number,reflect
R8285 T28850 T28849 compound mean,number
R8286 T28851 T28849 prep of,number
R8287 T28852 T28851 pobj substitutions,of
R8288 T28853 T28852 prep per,substitutions
R8289 T28854 T28853 pobj site,per
R8290 T28855 T28847 punct .,reflect
R8291 T28857 T28858 punct (,D
R8292 T28858 T28859 meta D,comparison
R8293 T28860 T28858 punct ),D
R8294 T28861 T28859 amod Schematic,comparison
R8295 T28862 T28859 prep of,comparison
R8296 T28863 T28864 det the,sequences
R8297 T28864 T28862 pobj sequences,of
R8298 T28865 T28866 compound amino,acid
R8299 T28866 T28864 compound acid,sequences
R8300 T28867 T28864 prep for,sequences
R8301 T28868 T28869 nmod mouse,proteins
R8302 T28869 T28867 pobj proteins,for
R8303 T28870 T28868 punct ", ",mouse
R8304 T28871 T28868 conj rat,mouse
R8305 T28872 T28871 punct ", ",rat
R8306 T28873 T28871 amod human,rat
R8307 T28874 T28871 punct ", ",rat
R8308 T28875 T28871 conj chick,rat
R8309 T28876 T28875 cc and,chick
R8310 T28877 T28875 conj zebrafish,chick
R8311 T28878 T28879 compound mr,s
R8312 T28879 T28869 compound s,proteins
R8313 T28880 T28879 punct -,s
R8314 T28881 T28859 punct .,comparison
R8315 T28883 T28884 det The,similarity
R8316 T28884 T28886 nsubjpass similarity,shown
R8317 T28885 T28884 compound percent,similarity
R8318 T28887 T28884 prep of,similarity
R8319 T28888 T28889 det the,domains
R8320 T28889 T28887 pobj domains,of
R8321 T28890 T28889 compound SAM,domains
R8322 T28891 T28889 cc and,domains
R8323 T28892 T28893 amod other,regions
R8324 T28893 T28889 conj regions,domains
R8325 T28894 T28884 prep to,similarity
R8326 T28895 T28896 det the,regions
R8327 T28896 T28894 pobj regions,to
R8328 T28897 T28896 amod corresponding,regions
R8329 T28898 T28896 prep of,regions
R8330 T28899 T28900 det the,protein
R8331 T28900 T28898 pobj protein,of
R8332 T28901 T28900 compound mouse,protein
R8333 T28902 T28886 auxpass is,shown
R8334 T28903 T28886 punct .,shown
R8335 T28905 T28906 amod Overall,similarity
R8336 T28906 T28908 nsubjpass similarity,shown
R8337 T28907 T28906 compound sequence,similarity
R8338 T28909 T28906 prep with,similarity
R8339 T28910 T28911 det the,protein
R8340 T28911 T28909 pobj protein,with
R8341 T28912 T28911 compound mouse,protein
R8342 T28913 T28908 auxpass is,shown
R8343 T28914 T28908 prep on,shown
R8344 T28915 T28916 det the,right
R8345 T28916 T28914 pobj right,on
R8346 T28917 T28908 punct .,shown