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PMC:1435744 / 131-652 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T827 37-44 SO:0000417 denotes domains
T828 128-135 SO:0000417 denotes modules
T829 142-148 SO:0000417 denotes domain
T830 350-356 SO:0000417 denotes domain
T831 400-409 GO:0010467 denotes expressed
T832 413-420 UBERON:0000966 denotes retinal
T833 413-435 CL:0010009 denotes retinal photoreceptors
T834 444-456 UBERON:0001905 denotes pineal gland
T835 475-480 NCBITaxon:10088 denotes mouse
T836 481-485 PR:000014441 denotes mr-s
T837 487-519 PR:000014441 denotes major retinal SAM domain protein
T838 493-500 UBERON:0000966 denotes retinal
T839 505-511 SO:0000417 denotes domain

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T903 25-30 SO_EXT:sequence_or_structure_motif denotes motif
T904 37-44 SO_EXT:0000417 denotes domains
T905 53-61 CHEBI_EXT:residue denotes residues
T906 100-107 CHEBI_PR_EXT:protein denotes protein
T907 108-115 CHEBI_PR_EXT:protein denotes protein
T908 128-135 SO_EXT:0000417 denotes modules
T909 142-148 SO_EXT:0000417 denotes domain
T910 179-187 CHEBI_PR_EXT:protein denotes proteins
T911 220-228 CHEBI_PR_EXT:protein denotes proteins
T912 244-257 GO_EXT:transcription denotes transcription
T913 244-265 GO_EXT:transcription_factor denotes transcription factors
T914 295-302 SO_EXT:sequence_cloning_process denotes cloning
T915 350-356 SO_EXT:0000417 denotes domain
T916 368-375 CHEBI_PR_EXT:protein denotes protein
T917 400-409 GO:0010467 denotes expressed
T918 413-420 UBERON:0000966 denotes retinal
T919 413-435 CL:0010009 denotes retinal photoreceptors
T920 444-456 UBERON:0001905 denotes pineal gland
T921 475-480 NCBITaxon:10088 denotes mouse
T922 481-485 PR_EXT:000014441 denotes mr-s
T923 487-519 PR_EXT:000014441 denotes major retinal SAM domain protein
T924 493-500 UBERON:0000966 denotes retinal
T925 505-511 SO_EXT:0000417 denotes domain
T926 512-519 CHEBI_PR_EXT:protein denotes protein

craft-sa-dev

Id Subject Object Predicate Lexical cue
T1025 0-10 sentence denotes Background
T1026 0-10 NN denotes Background
T1027 10-136 sentence denotes Sterile alpha motif (SAM) domains are ~70 residues long and have been reported as common protein-protein interaction modules.
T1028 11-18 JJ denotes Sterile
T1029 25-30 NN denotes motif
T1030 19-24 NN denotes alpha
T1031 37-44 NNS denotes domains
T1032 31-32 -LRB- denotes (
T1033 32-35 NN denotes SAM
T1034 35-36 -RRB- denotes )
T1035 45-48 VBP denotes are
T1036 49-50 SYM denotes ~
T1037 50-52 CD denotes 70
T1038 53-61 NNS denotes residues
T1039 62-66 JJ denotes long
T1040 67-70 CC denotes and
T1041 71-75 VBP denotes have
T1042 81-89 VBN denotes reported
T1043 76-80 VBN denotes been
T1044 90-92 IN denotes as
T1045 93-99 JJ denotes common
T1046 128-135 NNS denotes modules
T1047 100-107 NN denotes protein
T1048 108-115 NN denotes protein
T1049 107-108 HYPH denotes -
T1050 116-127 NN denotes interaction
T1051 135-136 . denotes .
T1052 136-266 sentence denotes This domain is found in a large number of proteins, including Polycomb group (PcG) proteins and ETS family transcription factors.
T1053 137-141 DT denotes This
T1054 142-148 NN denotes domain
T1055 152-157 VBN denotes found
T1056 149-151 VBZ denotes is
T1057 158-160 IN denotes in
T1058 161-162 DT denotes a
T1059 169-175 NN denotes number
T1060 163-168 JJ denotes large
T1061 176-178 IN denotes of
T1062 179-187 NN denotes proteins
T1063 187-189 , denotes ,
T1064 189-198 VBG denotes including
T1065 199-207 NN denotes Polycomb
T1066 208-213 NN denotes group
T1067 220-228 NN denotes proteins
T1068 214-215 -LRB- denotes (
T1069 215-218 NN denotes PcG
T1070 218-219 -RRB- denotes )
T1071 229-232 CC denotes and
T1072 233-236 NN denotes ETS
T1073 237-243 NN denotes family
T1074 258-265 NNS denotes factors
T1075 244-257 NN denotes transcription
T1076 265-266 . denotes .
T1077 266-521 sentence denotes In this work, we report the cloning and functional characterization of a novel SAM domain-containing protein, which is predominantly expressed in retinal photoreceptors and the pineal gland and is designated mouse mr-s (major retinal SAM domain protein).
T1078 267-269 IN denotes In
T1079 284-290 VBP denotes report
T1080 270-274 DT denotes this
T1081 275-279 NN denotes work
T1082 279-281 , denotes ,
T1083 281-283 PRP denotes we
T1084 291-294 DT denotes the
T1085 295-302 NN denotes cloning
T1086 303-306 CC denotes and
T1087 307-317 JJ denotes functional
T1088 318-334 NN denotes characterization
T1089 335-337 IN denotes of
T1090 338-339 DT denotes a
T1091 368-375 NN denotes protein
T1092 340-345 JJ denotes novel
T1093 346-349 NN denotes SAM
T1094 350-356 NN denotes domain
T1095 357-367 VBG denotes containing
T1096 356-357 HYPH denotes -
T1097 375-377 , denotes ,
T1098 377-382 WDT denotes which
T1099 400-409 VBN denotes expressed
T1100 383-385 VBZ denotes is
T1101 386-399 RB denotes predominantly
T1102 410-412 IN denotes in
T1103 413-420 JJ denotes retinal
T1104 421-435 NNS denotes photoreceptors
T1105 436-439 CC denotes and
T1106 440-443 DT denotes the
T1107 451-456 NN denotes gland
T1108 444-450 JJ denotes pineal
T1109 457-460 CC denotes and
T1110 461-463 VBZ denotes is
T1111 464-474 VBN denotes designated
T1112 475-480 NN denotes mouse
T1113 484-485 NN denotes s
T1114 481-483 NN denotes mr
T1115 483-484 HYPH denotes -
T1116 486-487 -LRB- denotes (
T1117 512-519 NN denotes protein
T1118 487-492 JJ denotes major
T1119 493-500 JJ denotes retinal
T1120 501-504 NN denotes SAM
T1121 505-511 NN denotes domain
T1122 519-520 -RRB- denotes )
T1123 520-521 . denotes .
R21 T1029 T1031 nmod motif,domains
R22 T1030 T1029 nmod alpha,motif
R23 T1031 T1035 nsubj domains,are
R24 T1032 T1029 punct (,motif
R25 T1033 T1029 appos SAM,motif
R26 T1034 T1031 punct ),domains
R34 T1043 T1042 auxpass been,reported
R37 T1046 T1044 pobj modules,as
R38 T1047 T1048 compound protein,protein
R40 T1049 T1048 punct -,protein
R41 T1050 T1046 compound interaction,modules
R48 T1059 T1057 pobj number,in
R49 T1060 T1059 amod large,number
R56 T1067 T1064 pobj proteins,including
R57 T1068 T1066 punct (,group
R58 T1069 T1066 appos PcG,group
R59 T1070 T1067 punct ),proteins
R63 T1074 T1067 conj factors,proteins
R64 T1075 T1074 compound transcription,factors
R78 T1091 T1089 pobj protein,of
R79 T1092 T1091 amod novel,protein
R80 T1093 T1094 compound SAM,domain
R81 T1094 T1095 npadvmod domain,containing
R83 T1096 T1095 punct -,containing
R86 T1099 T1091 relcl expressed,protein
R87 T1100 T1099 auxpass is,expressed
R88 T1101 T1099 advmod predominantly,expressed
R94 T1107 T1104 conj gland,photoreceptors
R95 T1108 T1107 amod pineal,gland
R100 T1113 T1111 oprd s,designated
R101 T1114 T1113 compound mr,s
R102 T1115 T1113 punct -,s
R104 T1117 T1113 parataxis protein,s
R105 T1118 T1117 amod major,protein
R106 T1119 T1117 amod retinal,protein
R107 T1120 T1121 compound SAM,domain
R108 T1121 T1117 compound domain,protein
R51 T1062 T1061 pobj proteins,of
R20 T1028 T1029 amod Sterile,motif
R27 T1036 T1037 punct ~,70
R28 T1037 T1038 nummod 70,residues
R29 T1038 T1039 npadvmod residues,long
R30 T1039 T1035 acomp long,are
R31 T1040 T1035 cc and,are
R32 T1041 T1042 aux have,reported
R35 T1044 T1042 prep as,reported
R36 T1045 T1046 amod common,modules
R39 T1048 T1050 compound protein,interaction
R42 T1051 T1035 punct .,are
R43 T1053 T1054 det This,domain
R44 T1054 T1055 nsubjpass domain,found
R45 T1056 T1055 auxpass is,found
R46 T1057 T1055 prep in,found
R47 T1058 T1059 det a,number
R50 T1061 T1059 prep of,number
R52 T1063 T1059 punct ", ",number
R53 T1064 T1059 prep including,number
R54 T1065 T1066 nmod Polycomb,group
R55 T1066 T1067 nmod group,proteins
R60 T1071 T1067 cc and,proteins
R61 T1072 T1073 compound ETS,family
R62 T1073 T1074 compound family,factors
R65 T1076 T1055 punct .,found
R66 T1078 T1079 prep In,report
R67 T1080 T1081 det this,work
R68 T1081 T1078 pobj work,In
R69 T1082 T1079 punct ", ",report
R70 T1083 T1079 nsubj we,report
R71 T1084 T1085 det the,cloning
R72 T1085 T1079 dobj cloning,report
R73 T1086 T1085 cc and,cloning
R74 T1087 T1088 amod functional,characterization
R75 T1088 T1085 conj characterization,cloning
R76 T1089 T1085 prep of,cloning
R77 T1090 T1091 det a,protein
R82 T1095 T1091 amod containing,protein
R84 T1097 T1091 punct ", ",protein
R85 T1098 T1099 dep which,expressed
R89 T1102 T1099 prep in,expressed
R90 T1103 T1104 amod retinal,photoreceptors
R91 T1104 T1102 pobj photoreceptors,in
R92 T1105 T1104 cc and,photoreceptors
R93 T1106 T1107 det the,gland
R96 T1109 T1099 cc and,expressed
R97 T1110 T1111 auxpass is,designated
R98 T1111 T1099 conj designated,expressed
R99 T1112 T1113 compound mouse,s
R103 T1116 T1117 punct (,protein
R109 T1122 T1117 punct ),protein
R110 T1123 T1079 punct .,report
R33 T1042 T1035 conj reported,are