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PMC:1420271 / 5868-6067 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T3826 40-44 PR:000006847 denotes ESG1
T3827 45-49 SO:0000704 denotes gene
T3828 67-76 NCBITaxon:2 denotes bacterial
T3829 67-98 SO:0000153 denotes bacterial artificial chromosome
T3830 100-103 SO:0000153 denotes BAC
T3831 127-133 SO:0000112 denotes primer
T3832 173-177 SO:0000704 denotes gene
T3833 187-198 SO:0000336 denotes pseudogenes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T3935 11-14 CHEBI_SO_EXT:DNA denotes DNA
T3936 40-44 PR_EXT:000006847 denotes ESG1
T3937 45-49 SO_EXT:0000704 denotes gene
T3938 67-76 NCBITaxon:2 denotes bacterial
T3939 67-98 SO_EXT:0000153 denotes bacterial artificial chromosome
T3940 88-98 GO_SO_EXT:chromosome denotes chromosome
T3941 100-103 SO_EXT:0000153 denotes BAC
T3942 105-108 CHEBI_SO_EXT:DNA denotes DNA
T3943 127-133 SO_EXT:0000112 denotes primer
T3944 173-177 SO_EXT:0000704 denotes gene
T3945 187-198 SO_EXT:0000336 denotes pseudogenes

craft-sa-dev

Id Subject Object Predicate Lexical cue
T4279 0-199 sentence denotes To obtain DNA fragments containing the ESG1 gene, we screened the bacterial artificial chromosome (BAC) DNA pool by PCR using primer pairs that would only amplify the real gene, not the pseudogenes.
T4280 1-3 TO denotes To
T4281 4-10 VB denotes obtain
T4282 54-62 VBD denotes screened
T4283 11-14 NN denotes DNA
T4284 15-24 NNS denotes fragments
T4285 25-35 VBG denotes containing
T4286 36-39 DT denotes the
T4287 45-49 NN denotes gene
T4288 40-44 NN denotes ESG1
T4289 49-51 , denotes ,
T4290 51-53 PRP denotes we
T4291 63-66 DT denotes the
T4292 109-113 NN denotes pool
T4293 67-76 JJ denotes bacterial
T4294 88-98 NN denotes chromosome
T4295 77-87 JJ denotes artificial
T4296 99-100 -LRB- denotes (
T4297 100-103 NN denotes BAC
T4298 103-104 -RRB- denotes )
T4299 105-108 NN denotes DNA
T4300 114-116 IN denotes by
T4301 117-120 NN denotes PCR
T4302 121-126 VBG denotes using
T4303 127-133 NN denotes primer
T4304 134-139 NNS denotes pairs
T4305 140-144 WDT denotes that
T4306 156-163 VB denotes amplify
T4307 145-150 MD denotes would
T4308 151-155 RB denotes only
T4309 164-167 DT denotes the
T4310 173-177 NN denotes gene
T4311 168-172 JJ denotes real
T4312 177-179 , denotes ,
T4313 179-182 RB denotes not
T4314 187-198 NNS denotes pseudogenes
T4315 183-186 DT denotes the
T4316 198-199 . denotes .
R969 T4280 T4281 aux To,obtain
R970 T4281 T4282 advcl obtain,screened
R971 T4283 T4284 compound DNA,fragments
R972 T4284 T4281 dobj fragments,obtain
R973 T4285 T4284 acl containing,fragments
R974 T4286 T4287 det the,gene
R975 T4287 T4285 dobj gene,containing
R976 T4288 T4287 compound ESG1,gene
R977 T4289 T4282 punct ", ",screened
R978 T4290 T4282 nsubj we,screened
R979 T4291 T4292 det the,pool
R980 T4292 T4282 dobj pool,screened
R981 T4293 T4294 amod bacterial,chromosome
R982 T4294 T4292 nmod chromosome,pool
R983 T4295 T4294 amod artificial,chromosome
R984 T4296 T4294 punct (,chromosome
R985 T4297 T4294 appos BAC,chromosome
R986 T4298 T4292 punct ),pool
R987 T4299 T4292 compound DNA,pool
R988 T4300 T4282 prep by,screened
R989 T4301 T4300 pobj PCR,by
R990 T4302 T4282 advcl using,screened
R991 T4303 T4304 compound primer,pairs
R992 T4304 T4302 dobj pairs,using
R993 T4305 T4306 dep that,amplify
R994 T4306 T4304 relcl amplify,pairs
R995 T4307 T4306 aux would,amplify
R996 T4308 T4306 advmod only,amplify
R997 T4309 T4310 det the,gene
R998 T4310 T4306 dobj gene,amplify
R999 T4311 T4310 amod real,gene
R1000 T4312 T4306 punct ", ",amplify
R1001 T4313 T4314 neg not,pseudogenes
R1002 T4314 T4306 dep pseudogenes,amplify
R1003 T4315 T4314 det the,pseudogenes
R1004 T4316 T4282 punct .,screened