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PMC:1420271 / 12728-13168 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13911 0-4 SO:0000704 denotes Gene
T13912 0-15 GO:0010467 denotes Gene expression
T13913 28-32 PR:000006847 denotes ESG1
T13914 38-46 CL:0002322 denotes ES cells
T13915 101-109 CL:0002322 denotes ES cells
T13916 114-118 PR:000006847 denotes ESG1
T13917 124-132 CL:0002322 denotes ES cells
T13918 151-154 CHEBI:37987 denotes Cy3
T13919 159-162 CHEBI:37989 denotes Cy5
T13920 191-201 GO:0097617 denotes hybridized
T13921 213-218 NCBITaxon:10088 denotes Mouse
T13922 340-344 PR:000006847 denotes ESG1
T13923 352-356 PR:000006847 denotes ESG1
T13924 384-394 GO:0010467 denotes expression
T13925 398-402 PR:000006847 denotes ESG1
T13926 404-408 PR:000013044 denotes Oct3
T13927 415-419 PR:000005257 denotes CDK4

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13928 0-4 SO_EXT:0000704 denotes Gene
T13929 0-15 GO:0010467 denotes Gene expression
T13930 28-32 PR_EXT:000006847 denotes ESG1
T13931 33-37 SO_EXT:sequence_nullness denotes null
T13932 38-46 CL:0002322 denotes ES cells
T13933 41-46 CL_GO_EXT:cell denotes cells
T13934 51-54 CHEBI_SO_EXT:DNA denotes DNA
T13935 82-85 CHEBI_SO_EXT:RNA denotes RNA
T13936 91-100 SO_EXT:wild_type_entity_or_quality denotes wild-type
T13937 101-109 CL:0002322 denotes ES cells
T13938 104-109 CL_GO_EXT:cell denotes cells
T13939 114-118 PR_EXT:000006847 denotes ESG1
T13940 119-123 SO_EXT:sequence_nullness denotes null
T13941 124-132 CL:0002322 denotes ES cells
T13942 127-132 CL_GO_EXT:cell denotes cells
T13943 138-145 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T13944 151-154 CHEBI:37987 denotes Cy3
T13945 159-162 CHEBI:37989 denotes Cy5
T13946 191-201 GO:0097617 denotes hybridized
T13947 213-218 NCBITaxon:10088 denotes Mouse
T13948 278-284 SO_EXT:sequence_cloned_entity denotes clones
T13949 322-326 CL_GO_EXT:cell denotes Cell
T13950 340-344 PR_EXT:000006847 denotes ESG1
T13951 344-345 SO_EXT:normal_or_wild_type_or_present denotes +
T13952 346-347 SO_EXT:sequence_nullness_or_absence denotes -
T13953 352-356 PR_EXT:000006847 denotes ESG1
T13954 356-357 SO_EXT:sequence_nullness_or_absence denotes -
T13955 358-359 SO_EXT:sequence_nullness_or_absence denotes -
T13956 360-365 CL_GO_EXT:cell denotes cells
T13957 384-394 GO:0010467 denotes expression
T13958 398-402 PR_EXT:000006847 denotes ESG1
T13959 404-408 PR_EXT:000013044 denotes Oct3
T13960 415-419 PR_EXT:000005257 denotes CDK4

craft-sa-dev

Id Subject Object Predicate Lexical cue
T13961 0-4 NN denotes Gene
T13962 5-15 NN denotes expression
T13963 16-24 NNS denotes analyses
T13964 25-27 IN denotes of
T13965 28-32 NN denotes ESG1
T13966 33-37 JJ denotes null
T13967 32-33 HYPH denotes -
T13968 41-46 NNS denotes cells
T13969 38-40 NN denotes ES
T13970 46-47 . denotes .
T13971 47-75 sentence denotes A) DNA microarray analyses.
T13972 48-49 LS denotes A
T13973 66-74 NNS denotes analyses
T13974 49-50 -RRB- denotes )
T13975 51-54 NN denotes DNA
T13976 55-65 NN denotes microarray
T13977 74-75 . denotes .
T13978 75-177 sentence denotes Total RNA from wild-type ES cells and ESG1-null ES cells were labeled with Cy3 and Cy5, respectively.
T13979 76-81 JJ denotes Total
T13980 82-85 NN denotes RNA
T13981 138-145 VBN denotes labeled
T13982 86-90 IN denotes from
T13983 91-95 JJ denotes wild
T13984 96-100 NN denotes type
T13985 95-96 HYPH denotes -
T13986 104-109 NNS denotes cells
T13987 101-103 NN denotes ES
T13988 110-113 CC denotes and
T13989 114-118 NN denotes ESG1
T13990 119-123 JJ denotes null
T13991 118-119 HYPH denotes -
T13992 127-132 NNS denotes cells
T13993 124-126 NN denotes ES
T13994 133-137 VBD denotes were
T13995 146-150 IN denotes with
T13996 151-154 NN denotes Cy3
T13997 155-158 CC denotes and
T13998 159-162 NN denotes Cy5
T13999 162-164 , denotes ,
T14000 164-176 RB denotes respectively
T14001 176-177 . denotes .
T14002 177-245 sentence denotes Samples were hybridized to Agilent Mouse Developmental Microarrays.
T14003 178-185 NNS denotes Samples
T14004 191-201 VBN denotes hybridized
T14005 186-190 VBD denotes were
T14006 202-204 IN denotes to
T14007 205-212 NNP denotes Agilent
T14008 233-244 NNS denotes Microarrays
T14009 213-218 NN denotes Mouse
T14010 219-232 JJ denotes Developmental
T14011 244-245 . denotes .
T14012 245-295 sentence denotes The averages of two independent clones are shown.
T14013 246-249 DT denotes The
T14014 250-258 NNS denotes averages
T14015 289-294 VBN denotes shown
T14016 259-261 IN denotes of
T14017 262-265 CD denotes two
T14018 278-284 NNS denotes clones
T14019 266-277 JJ denotes independent
T14020 285-288 VBP denotes are
T14021 294-295 . denotes .
T14022 295-321 sentence denotes B) Western blot analyses.
T14023 296-297 LS denotes B
T14024 312-320 NNS denotes analyses
T14025 297-298 -RRB- denotes )
T14026 299-306 NNP denotes Western
T14027 307-311 NN denotes blot
T14028 320-321 . denotes .
T14029 321-440 sentence denotes Cell lysates from ESG1+/- and ESG1-/- cells were examined for expression of ESG1, Oct3/4 and CDK4 with immunoblotting.
T14030 322-326 NN denotes Cell
T14031 327-334 NNS denotes lysates
T14032 371-379 VBN denotes examined
T14033 335-339 IN denotes from
T14034 340-344 NN denotes ESG1
T14035 360-365 NNS denotes cells
T14036 344-345 SYM denotes +
T14037 345-346 HYPH denotes /
T14038 346-347 SYM denotes -
T14039 348-351 CC denotes and
T14040 352-356 NN denotes ESG1
T14041 356-357 SYM denotes -
T14042 357-358 HYPH denotes /
T14043 358-359 SYM denotes -
T14044 366-370 VBD denotes were
T14045 380-383 IN denotes for
T14046 384-394 NN denotes expression
T14047 395-397 IN denotes of
T14048 398-402 NN denotes ESG1
T14049 402-404 , denotes ,
T14050 404-408 NN denotes Oct3
T14051 408-409 HYPH denotes /
T14052 409-410 CD denotes 4
T14053 411-414 CC denotes and
T14054 415-419 NN denotes CDK4
T14055 420-424 IN denotes with
T14056 425-439 NN denotes immunoblotting
T14057 439-440 . denotes .
R3959 T13961 T13962 compound Gene,expression
R3960 T13962 T13963 compound expression,analyses
R3961 T13964 T13963 prep of,analyses
R3962 T13965 T13966 npadvmod ESG1,null
R3963 T13966 T13968 amod null,cells
R3964 T13967 T13966 punct -,null
R3965 T13968 T13964 pobj cells,of
R3966 T13969 T13968 compound ES,cells
R3967 T13970 T13963 punct .,analyses
R3968 T13972 T13973 meta A,analyses
R3969 T13974 T13972 punct ),A
R3970 T13975 T13973 compound DNA,analyses
R3971 T13976 T13973 compound microarray,analyses
R3972 T13977 T13973 punct .,analyses
R3973 T13979 T13980 amod Total,RNA
R3974 T13980 T13981 nsubjpass RNA,labeled
R3975 T13982 T13980 prep from,RNA
R3976 T13983 T13984 amod wild,type
R3977 T13984 T13986 compound type,cells
R3978 T13985 T13984 punct -,type
R3979 T13986 T13982 pobj cells,from
R3980 T13987 T13986 compound ES,cells
R3981 T13988 T13986 cc and,cells
R3982 T13989 T13990 npadvmod ESG1,null
R3983 T13990 T13992 amod null,cells
R3984 T13991 T13990 punct -,null
R3985 T13992 T13986 conj cells,cells
R3986 T13993 T13992 compound ES,cells
R3987 T13994 T13981 auxpass were,labeled
R3988 T13995 T13981 prep with,labeled
R3989 T13996 T13995 pobj Cy3,with
R3990 T13997 T13996 cc and,Cy3
R3991 T13998 T13996 conj Cy5,Cy3
R3992 T13999 T13981 punct ", ",labeled
R3993 T14000 T13981 advmod respectively,labeled
R3994 T14001 T13981 punct .,labeled
R3995 T14003 T14004 nsubjpass Samples,hybridized
R3996 T14005 T14004 auxpass were,hybridized
R3997 T14006 T14004 prep to,hybridized
R3998 T14007 T14008 nmod Agilent,Microarrays
R3999 T14008 T14006 pobj Microarrays,to
R4000 T14009 T14008 nmod Mouse,Microarrays
R4001 T14010 T14008 amod Developmental,Microarrays
R4002 T14011 T14004 punct .,hybridized
R4003 T14013 T14014 det The,averages
R4004 T14014 T14015 nsubjpass averages,shown
R4005 T14016 T14014 prep of,averages
R4006 T14017 T14018 nummod two,clones
R4007 T14018 T14016 pobj clones,of
R4008 T14019 T14018 amod independent,clones
R4009 T14020 T14015 auxpass are,shown
R4010 T14021 T14015 punct .,shown
R4011 T14023 T14024 meta B,analyses
R4012 T14025 T14023 punct ),B
R4013 T14026 T14027 compound Western,blot
R4014 T14027 T14024 compound blot,analyses
R4015 T14028 T14024 punct .,analyses
R4016 T14030 T14031 compound Cell,lysates
R4017 T14031 T14032 nsubjpass lysates,examined
R4018 T14033 T14031 prep from,lysates
R4019 T14034 T14035 nmod ESG1,cells
R4020 T14035 T14033 pobj cells,from
R4021 T14036 T14034 punct +,ESG1
R4022 T14037 T14034 punct /,ESG1
R4023 T14038 T14034 punct -,ESG1
R4024 T14039 T14034 cc and,ESG1
R4025 T14040 T14034 conj ESG1,ESG1
R4026 T14041 T14040 punct -,ESG1
R4027 T14042 T14040 punct /,ESG1
R4028 T14043 T14040 punct -,ESG1
R4029 T14044 T14032 auxpass were,examined
R4030 T14045 T14032 prep for,examined
R4031 T14046 T14045 pobj expression,for
R4032 T14047 T14046 prep of,expression
R4033 T14048 T14047 pobj ESG1,of
R4034 T14049 T14048 punct ", ",ESG1
R4035 T14050 T14048 conj Oct3,ESG1
R4036 T14051 T14050 punct /,Oct3
R4037 T14052 T14050 nummod 4,Oct3
R4038 T14053 T14050 cc and,Oct3
R4039 T14054 T14050 conj CDK4,Oct3
R4040 T14055 T14032 prep with,examined
R4041 T14056 T14055 pobj immunoblotting,with
R4042 T14057 T14032 punct .,examined