PMC:1420271 / 11837-12717 JSONTXT

Annnotations TAB JSON ListView MergeView

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T6171","span":{"begin":195,"end":199},"obj":"SO:0000704"},{"id":"T6172","span":{"begin":234,"end":238},"obj":"PR:000006847"},{"id":"T6173","span":{"begin":242,"end":250},"obj":"CL:0002322"},{"id":"T6174","span":{"begin":268,"end":278},"obj":"GO:0010467"},{"id":"T6175","span":{"begin":282,"end":289},"obj":"CL:0002322"},{"id":"T6176","span":{"begin":297,"end":302},"obj":"SO:0000704"},{"id":"T6177","span":{"begin":312,"end":317},"obj":"PR:000010968"},{"id":"T6178","span":{"begin":322,"end":326},"obj":"PR:000013044"},{"id":"T6179","span":{"begin":344,"end":348},"obj":"PR:000006847"},{"id":"T6180","span":{"begin":352,"end":360},"obj":"CL:0002322"},{"id":"T6181","span":{"begin":382,"end":386},"obj":"PR:000013044"},{"id":"T6182","span":{"begin":389,"end":399},"obj":"GO:0010467"},{"id":"T6183","span":{"begin":459,"end":463},"obj":"SO:0000704"},{"id":"T6184","span":{"begin":459,"end":474},"obj":"GO:0010467"},{"id":"T6185","span":{"begin":513,"end":521},"obj":"CL:0002322"},{"id":"T6186","span":{"begin":526,"end":530},"obj":"PR:000006847"},{"id":"T6187","span":{"begin":534,"end":542},"obj":"CL:0002322"},{"id":"T6188","span":{"begin":552,"end":557},"obj":"SO:0000704"},{"id":"T6189","span":{"begin":605,"end":609},"obj":"PR:000006847"},{"id":"T6190","span":{"begin":630,"end":634},"obj":"PR:000009450"},{"id":"T6191","span":{"begin":638,"end":641},"obj":"PR:000014397"},{"id":"T6192","span":{"begin":643,"end":647},"obj":"PR:000003172"},{"id":"T6193","span":{"begin":649,"end":654},"obj":"PR:000013428"},{"id":"T6194","span":{"begin":665,"end":670},"obj":"PR:000000216"},{"id":"T6195","span":{"begin":678,"end":683},"obj":"SO:0000704"},{"id":"T6196","span":{"begin":693,"end":702},"obj":"GO:0065007"},{"id":"T6197","span":{"begin":729,"end":733},"obj":"PR:000006847"},{"id":"T6198","span":{"begin":741,"end":745},"obj":"PR:000006847"},{"id":"T6199","span":{"begin":777,"end":783},"obj":"SO:0000417"},{"id":"T6200","span":{"begin":816,"end":821},"obj":"SO:0000704"},{"id":"T6162","span":{"begin":3,"end":4},"obj":"CL:0002322"},{"id":"T6163","span":{"begin":4,"end":5},"obj":"CHEBI:51686"},{"id":"T6164","span":{"begin":16,"end":20},"obj":"SO:0000704"},{"id":"T6165","span":{"begin":16,"end":31},"obj":"GO:0010467"},{"id":"T6166","span":{"begin":44,"end":48},"obj":"PR:000006847"},{"id":"T6167","span":{"begin":52,"end":60},"obj":"CL:0002322"},{"id":"T6168","span":{"begin":126,"end":131},"obj":"SO:0000704"},{"id":"T6169","span":{"begin":158,"end":166},"obj":"CL:0002322"},{"id":"T6170","span":{"begin":168,"end":172},"obj":"PR:000006847"}],"text":"We examined the gene expression profiles of ESG1-/- ES cells using oligonucleotide-based DNA microarrays representing ~20,000 genes. In comparison to control ES cells, ESG1 was identified as the gene reduced to the greatest extent in ESG1-/- ES cells (Figure 6A). The expression of ES cell marker genes, such as Nanog and Oct3/4, was normal in ESG1-/- ES cells. We confirmed normal Oct3/4 expression at protein levels by Western blot (Figure 6B). The overall gene expression profiles were similar between control ES cells and ESG1-/- ES cells. Several genes exhibited a greater than two-fold reduction in ESG1-/- cells, including Krt1-8, Pem, Ctgf, Ptgs2, Igf2 and Inhba. These genes might be regulated directly or indirectly by ESG1. Since ESG1 contains a KH-type RNA-binding domain, it may stabilize mRNA of these genes. Further studied are required to clarify this possibility."}

    craft-ca-core-ex-dev

    {"project":"craft-ca-core-ex-dev","denotations":[{"id":"T6307","span":{"begin":0,"end":1},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T6327","span":{"begin":240,"end":241},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6328","span":{"begin":242,"end":250},"obj":"CL:0002322"},{"id":"T6329","span":{"begin":245,"end":250},"obj":"CL_GO_EXT:cell"},{"id":"T6330","span":{"begin":268,"end":278},"obj":"GO:0010467"},{"id":"T6331","span":{"begin":282,"end":289},"obj":"CL:0002322"},{"id":"T6332","span":{"begin":285,"end":289},"obj":"CL_GO_EXT:cell"},{"id":"T6333","span":{"begin":290,"end":296},"obj":"CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag"},{"id":"T6334","span":{"begin":297,"end":302},"obj":"SO_EXT:0000704"},{"id":"T6335","span":{"begin":312,"end":317},"obj":"PR_EXT:000010968"},{"id":"T6336","span":{"begin":322,"end":326},"obj":"PR_EXT:000013044"},{"id":"T6337","span":{"begin":344,"end":348},"obj":"PR_EXT:000006847"},{"id":"T6338","span":{"begin":348,"end":349},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6339","span":{"begin":350,"end":351},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6340","span":{"begin":352,"end":360},"obj":"CL:0002322"},{"id":"T6341","span":{"begin":355,"end":360},"obj":"CL_GO_EXT:cell"},{"id":"T6342","span":{"begin":382,"end":386},"obj":"PR_EXT:000013044"},{"id":"T6343","span":{"begin":389,"end":399},"obj":"GO:0010467"},{"id":"T6344","span":{"begin":403,"end":410},"obj":"CHEBI_PR_EXT:protein"},{"id":"T6345","span":{"begin":459,"end":463},"obj":"SO_EXT:0000704"},{"id":"T6346","span":{"begin":459,"end":474},"obj":"GO:0010467"},{"id":"T6347","span":{"begin":513,"end":521},"obj":"CL:0002322"},{"id":"T6348","span":{"begin":516,"end":521},"obj":"CL_GO_EXT:cell"},{"id":"T6349","span":{"begin":526,"end":530},"obj":"PR_EXT:000006847"},{"id":"T6350","span":{"begin":530,"end":531},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6351","span":{"begin":532,"end":533},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6352","span":{"begin":534,"end":542},"obj":"CL:0002322"},{"id":"T6353","span":{"begin":537,"end":542},"obj":"CL_GO_EXT:cell"},{"id":"T6354","span":{"begin":552,"end":557},"obj":"SO_EXT:0000704"},{"id":"T6355","span":{"begin":605,"end":609},"obj":"PR_EXT:000006847"},{"id":"T6356","span":{"begin":609,"end":610},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6357","span":{"begin":611,"end":612},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6358","span":{"begin":613,"end":618},"obj":"CL_GO_EXT:cell"},{"id":"T6359","span":{"begin":630,"end":634},"obj":"PR_EXT:000009450"},{"id":"T6360","span":{"begin":638,"end":641},"obj":"PR_EXT:000014397"},{"id":"T6361","span":{"begin":643,"end":647},"obj":"PR_EXT:000003172"},{"id":"T6362","span":{"begin":649,"end":654},"obj":"PR_EXT:000013428"},{"id":"T6363","span":{"begin":656,"end":660},"obj":"CHEBI_PR_EXT:insulin_like_growth_factor_2"},{"id":"T6364","span":{"begin":665,"end":670},"obj":"PR_EXT:000000216"},{"id":"T6365","span":{"begin":678,"end":683},"obj":"SO_EXT:0000704"},{"id":"T6366","span":{"begin":693,"end":702},"obj":"GO:0065007"},{"id":"T6367","span":{"begin":729,"end":733},"obj":"PR_EXT:000006847"},{"id":"T6368","span":{"begin":741,"end":745},"obj":"PR_EXT:000006847"},{"id":"T6369","span":{"begin":765,"end":768},"obj":"CHEBI_SO_EXT:RNA"},{"id":"T6370","span":{"begin":769,"end":776},"obj":"CHEMINF_GO_EXT:chemical_binding_or_bond_formation"},{"id":"T6371","span":{"begin":777,"end":783},"obj":"SO_EXT:0000417"},{"id":"T6372","span":{"begin":802,"end":806},"obj":"CHEBI_SO_EXT:mRNA"},{"id":"T6373","span":{"begin":816,"end":821},"obj":"SO_EXT:0000704"},{"id":"T6308","span":{"begin":3,"end":4},"obj":"CL:0002322"},{"id":"T6309","span":{"begin":3,"end":4},"obj":"CL_GO_EXT:cell"},{"id":"T6310","span":{"begin":4,"end":5},"obj":"CHEBI:51686"},{"id":"T6311","span":{"begin":16,"end":20},"obj":"SO_EXT:0000704"},{"id":"T6312","span":{"begin":16,"end":31},"obj":"GO:0010467"},{"id":"T6313","span":{"begin":44,"end":48},"obj":"PR_EXT:000006847"},{"id":"T6314","span":{"begin":48,"end":49},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6315","span":{"begin":50,"end":51},"obj":"SO_EXT:sequence_nullness_or_absence"},{"id":"T6316","span":{"begin":52,"end":60},"obj":"CL:0002322"},{"id":"T6317","span":{"begin":55,"end":60},"obj":"CL_GO_EXT:cell"},{"id":"T6318","span":{"begin":67,"end":82},"obj":"CHEBI_SO_EXT:oligonucleotide"},{"id":"T6319","span":{"begin":89,"end":92},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T6320","span":{"begin":126,"end":131},"obj":"SO_EXT:0000704"},{"id":"T6321","span":{"begin":158,"end":166},"obj":"CL:0002322"},{"id":"T6322","span":{"begin":161,"end":166},"obj":"CL_GO_EXT:cell"},{"id":"T6323","span":{"begin":168,"end":172},"obj":"PR_EXT:000006847"},{"id":"T6324","span":{"begin":195,"end":199},"obj":"SO_EXT:0000704"},{"id":"T6325","span":{"begin":234,"end":238},"obj":"PR_EXT:000006847"},{"id":"T6326","span":{"begin":238,"end":239},"obj":"SO_EXT:sequence_nullness_or_absence"}],"text":"We examined the gene expression profiles of ESG1-/- ES cells using oligonucleotide-based DNA microarrays representing ~20,000 genes. In comparison to control ES cells, ESG1 was identified as the gene reduced to the greatest extent in ESG1-/- ES cells (Figure 6A). The expression of ES cell marker genes, such as Nanog and Oct3/4, was normal in ESG1-/- ES cells. We confirmed normal Oct3/4 expression at protein levels by Western blot (Figure 6B). The overall gene expression profiles were similar between control ES cells and ESG1-/- ES cells. Several genes exhibited a greater than two-fold reduction in ESG1-/- cells, including Krt1-8, Pem, Ctgf, Ptgs2, Igf2 and Inhba. These genes might be regulated directly or indirectly by ESG1. Since ESG1 contains a KH-type RNA-binding domain, it may stabilize mRNA of these genes. Further studied are required to clarify this possibility."}

    craft-sa-dev

    {"project":"craft-sa-dev","denotations":[{"id":"T6815","span":{"begin":49,"end":50},"obj":"HYPH"},{"id":"T6816","span":{"begin":50,"end":51},"obj":"SYM"},{"id":"T6817","span":{"begin":52,"end":54},"obj":"NN"},{"id":"T6818","span":{"begin":61,"end":66},"obj":"VBG"},{"id":"T6819","span":{"begin":67,"end":82},"obj":"NN"},{"id":"T6820","span":{"begin":83,"end":88},"obj":"VBN"},{"id":"T6821","span":{"begin":82,"end":83},"obj":"HYPH"},{"id":"T6822","span":{"begin":93,"end":104},"obj":"NNS"},{"id":"T6823","span":{"begin":89,"end":92},"obj":"NN"},{"id":"T6824","span":{"begin":105,"end":117},"obj":"VBG"},{"id":"T6825","span":{"begin":118,"end":119},"obj":"SYM"},{"id":"T6826","span":{"begin":119,"end":125},"obj":"CD"},{"id":"T6827","span":{"begin":126,"end":131},"obj":"NNS"},{"id":"T6828","span":{"begin":131,"end":132},"obj":"."},{"id":"T6829","span":{"begin":132,"end":263},"obj":"sentence"},{"id":"T6830","span":{"begin":133,"end":135},"obj":"IN"},{"id":"T6831","span":{"begin":177,"end":187},"obj":"VBN"},{"id":"T6832","span":{"begin":136,"end":146},"obj":"NN"},{"id":"T6833","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T6834","span":{"begin":150,"end":157},"obj":"NN"},{"id":"T6835","span":{"begin":161,"end":166},"obj":"NNS"},{"id":"T6836","span":{"begin":158,"end":160},"obj":"NN"},{"id":"T6837","span":{"begin":166,"end":168},"obj":","},{"id":"T6838","span":{"begin":168,"end":172},"obj":"NN"},{"id":"T6839","span":{"begin":173,"end":176},"obj":"VBD"},{"id":"T6840","span":{"begin":188,"end":190},"obj":"IN"},{"id":"T6841","span":{"begin":191,"end":194},"obj":"DT"},{"id":"T6842","span":{"begin":195,"end":199},"obj":"NN"},{"id":"T6843","span":{"begin":200,"end":207},"obj":"VBN"},{"id":"T6844","span":{"begin":208,"end":210},"obj":"IN"},{"id":"T6845","span":{"begin":211,"end":214},"obj":"DT"},{"id":"T6846","span":{"begin":224,"end":230},"obj":"NN"},{"id":"T6847","span":{"begin":215,"end":223},"obj":"JJS"},{"id":"T6848","span":{"begin":231,"end":233},"obj":"IN"},{"id":"T6849","span":{"begin":234,"end":238},"obj":"NN"},{"id":"T6850","span":{"begin":245,"end":250},"obj":"NNS"},{"id":"T6851","span":{"begin":238,"end":239},"obj":"SYM"},{"id":"T6852","span":{"begin":239,"end":240},"obj":"HYPH"},{"id":"T6853","span":{"begin":240,"end":241},"obj":"SYM"},{"id":"T6854","span":{"begin":242,"end":244},"obj":"NN"},{"id":"T6855","span":{"begin":251,"end":252},"obj":"-LRB-"},{"id":"T6856","span":{"begin":259,"end":261},"obj":"NN"},{"id":"T6857","span":{"begin":252,"end":258},"obj":"NN"},{"id":"T6858","span":{"begin":261,"end":262},"obj":"-RRB-"},{"id":"T6859","span":{"begin":262,"end":263},"obj":"."},{"id":"T6860","span":{"begin":263,"end":361},"obj":"sentence"},{"id":"T6861","span":{"begin":264,"end":267},"obj":"DT"},{"id":"T6862","span":{"begin":268,"end":278},"obj":"NN"},{"id":"T6863","span":{"begin":330,"end":333},"obj":"VBD"},{"id":"T6864","span":{"begin":279,"end":281},"obj":"IN"},{"id":"T6865","span":{"begin":282,"end":284},"obj":"NN"},{"id":"T6866","span":{"begin":285,"end":289},"obj":"NN"},{"id":"T6867","span":{"begin":297,"end":302},"obj":"NNS"},{"id":"T6868","span":{"begin":290,"end":296},"obj":"NN"},{"id":"T6869","span":{"begin":302,"end":304},"obj":","},{"id":"T6870","span":{"begin":304,"end":308},"obj":"JJ"},{"id":"T6871","span":{"begin":309,"end":311},"obj":"IN"},{"id":"T6872","span":{"begin":312,"end":317},"obj":"NN"},{"id":"T6873","span":{"begin":318,"end":321},"obj":"CC"},{"id":"T6874","span":{"begin":322,"end":326},"obj":"NN"},{"id":"T6875","span":{"begin":326,"end":327},"obj":"HYPH"},{"id":"T6876","span":{"begin":327,"end":328},"obj":"CD"},{"id":"T6877","span":{"begin":328,"end":330},"obj":","},{"id":"T6878","span":{"begin":334,"end":340},"obj":"JJ"},{"id":"T6879","span":{"begin":341,"end":343},"obj":"IN"},{"id":"T6880","span":{"begin":344,"end":348},"obj":"NN"},{"id":"T6881","span":{"begin":355,"end":360},"obj":"NNS"},{"id":"T6882","span":{"begin":348,"end":349},"obj":"SYM"},{"id":"T6883","span":{"begin":349,"end":350},"obj":"HYPH"},{"id":"T6884","span":{"begin":350,"end":351},"obj":"SYM"},{"id":"T6885","span":{"begin":352,"end":354},"obj":"NN"},{"id":"T6886","span":{"begin":360,"end":361},"obj":"."},{"id":"T6887","span":{"begin":361,"end":446},"obj":"sentence"},{"id":"T6888","span":{"begin":362,"end":364},"obj":"PRP"},{"id":"T6889","span":{"begin":365,"end":374},"obj":"VBD"},{"id":"T6890","span":{"begin":375,"end":381},"obj":"JJ"},{"id":"T6891","span":{"begin":389,"end":399},"obj":"NN"},{"id":"T6892","span":{"begin":382,"end":386},"obj":"NN"},{"id":"T6893","span":{"begin":386,"end":387},"obj":"HYPH"},{"id":"T6894","span":{"begin":387,"end":388},"obj":"CD"},{"id":"T6895","span":{"begin":400,"end":402},"obj":"IN"},{"id":"T6897","span":{"begin":411,"end":417},"obj":"NNS"},{"id":"T6898","span":{"begin":418,"end":420},"obj":"IN"},{"id":"T6899","span":{"begin":421,"end":428},"obj":"NNP"},{"id":"T6900","span":{"begin":429,"end":433},"obj":"NN"},{"id":"T6901","span":{"begin":434,"end":435},"obj":"-LRB-"},{"id":"T6902","span":{"begin":442,"end":444},"obj":"NN"},{"id":"T6903","span":{"begin":435,"end":441},"obj":"NN"},{"id":"T6904","span":{"begin":444,"end":445},"obj":"-RRB-"},{"id":"T6905","span":{"begin":445,"end":446},"obj":"."},{"id":"T6906","span":{"begin":446,"end":543},"obj":"sentence"},{"id":"T6907","span":{"begin":447,"end":450},"obj":"DT"},{"id":"T6908","span":{"begin":475,"end":483},"obj":"NNS"},{"id":"T6909","span":{"begin":451,"end":458},"obj":"JJ"},{"id":"T6910","span":{"begin":459,"end":463},"obj":"NN"},{"id":"T6911","span":{"begin":464,"end":474},"obj":"NN"},{"id":"T6912","span":{"begin":484,"end":488},"obj":"VBD"},{"id":"T6913","span":{"begin":489,"end":496},"obj":"JJ"},{"id":"T6914","span":{"begin":497,"end":504},"obj":"IN"},{"id":"T6915","span":{"begin":505,"end":512},"obj":"NN"},{"id":"T6916","span":{"begin":516,"end":521},"obj":"NNS"},{"id":"T6917","span":{"begin":513,"end":515},"obj":"NN"},{"id":"T6918","span":{"begin":522,"end":525},"obj":"CC"},{"id":"T6919","span":{"begin":526,"end":530},"obj":"NN"},{"id":"T6920","span":{"begin":537,"end":542},"obj":"NNS"},{"id":"T6921","span":{"begin":530,"end":531},"obj":"SYM"},{"id":"T6922","span":{"begin":531,"end":532},"obj":"HYPH"},{"id":"T6923","span":{"begin":532,"end":533},"obj":"SYM"},{"id":"T6924","span":{"begin":534,"end":536},"obj":"NN"},{"id":"T6925","span":{"begin":542,"end":543},"obj":"."},{"id":"T6926","span":{"begin":543,"end":671},"obj":"sentence"},{"id":"T6927","span":{"begin":544,"end":551},"obj":"JJ"},{"id":"T6928","span":{"begin":552,"end":557},"obj":"NNS"},{"id":"T6929","span":{"begin":558,"end":567},"obj":"VBD"},{"id":"T6930","span":{"begin":568,"end":569},"obj":"DT"},{"id":"T6931","span":{"begin":592,"end":601},"obj":"NN"},{"id":"T6932","span":{"begin":570,"end":577},"obj":"JJR"},{"id":"T6933","span":{"begin":583,"end":591},"obj":"JJ"},{"id":"T6934","span":{"begin":578,"end":582},"obj":"IN"},{"id":"T6935","span":{"begin":602,"end":604},"obj":"IN"},{"id":"T6936","span":{"begin":605,"end":609},"obj":"NN"},{"id":"T6937","span":{"begin":613,"end":618},"obj":"NNS"},{"id":"T6938","span":{"begin":609,"end":610},"obj":"SYM"},{"id":"T6939","span":{"begin":610,"end":611},"obj":"HYPH"},{"id":"T6940","span":{"begin":611,"end":612},"obj":"SYM"},{"id":"T6941","span":{"begin":618,"end":620},"obj":","},{"id":"T6942","span":{"begin":620,"end":629},"obj":"VBG"},{"id":"T6943","span":{"begin":630,"end":634},"obj":"NN"},{"id":"T6944","span":{"begin":634,"end":635},"obj":"HYPH"},{"id":"T6945","span":{"begin":635,"end":636},"obj":"CD"},{"id":"T6946","span":{"begin":636,"end":638},"obj":","},{"id":"T6947","span":{"begin":638,"end":641},"obj":"NN"},{"id":"T6948","span":{"begin":641,"end":643},"obj":","},{"id":"T6949","span":{"begin":643,"end":647},"obj":"NN"},{"id":"T6950","span":{"begin":647,"end":649},"obj":","},{"id":"T6951","span":{"begin":649,"end":654},"obj":"NN"},{"id":"T6952","span":{"begin":654,"end":656},"obj":","},{"id":"T6953","span":{"begin":656,"end":660},"obj":"NN"},{"id":"T6954","span":{"begin":661,"end":664},"obj":"CC"},{"id":"T6955","span":{"begin":665,"end":670},"obj":"NN"},{"id":"T6956","span":{"begin":670,"end":671},"obj":"."},{"id":"T6957","span":{"begin":671,"end":734},"obj":"sentence"},{"id":"T6958","span":{"begin":672,"end":677},"obj":"DT"},{"id":"T6959","span":{"begin":678,"end":683},"obj":"NNS"},{"id":"T6960","span":{"begin":693,"end":702},"obj":"VBN"},{"id":"T6961","span":{"begin":684,"end":689},"obj":"MD"},{"id":"T6962","span":{"begin":690,"end":692},"obj":"VB"},{"id":"T6963","span":{"begin":703,"end":711},"obj":"RB"},{"id":"T6964","span":{"begin":712,"end":714},"obj":"CC"},{"id":"T6965","span":{"begin":715,"end":725},"obj":"RB"},{"id":"T6966","span":{"begin":726,"end":728},"obj":"IN"},{"id":"T6967","span":{"begin":729,"end":733},"obj":"NN"},{"id":"T6968","span":{"begin":733,"end":734},"obj":"."},{"id":"T6969","span":{"begin":734,"end":822},"obj":"sentence"},{"id":"T6970","span":{"begin":735,"end":740},"obj":"IN"},{"id":"T6971","span":{"begin":746,"end":754},"obj":"VBZ"},{"id":"T6972","span":{"begin":741,"end":745},"obj":"NN"},{"id":"T6973","span":{"begin":792,"end":801},"obj":"VB"},{"id":"T6974","span":{"begin":755,"end":756},"obj":"DT"},{"id":"T6975","span":{"begin":777,"end":783},"obj":"NN"},{"id":"T6976","span":{"begin":757,"end":759},"obj":"NN"},{"id":"T6977","span":{"begin":760,"end":764},"obj":"NN"},{"id":"T6978","span":{"begin":759,"end":760},"obj":"HYPH"},{"id":"T6979","span":{"begin":765,"end":768},"obj":"NN"},{"id":"T6980","span":{"begin":769,"end":776},"obj":"VBG"},{"id":"T6981","span":{"begin":768,"end":769},"obj":"HYPH"},{"id":"T6982","span":{"begin":783,"end":785},"obj":","},{"id":"T6983","span":{"begin":785,"end":787},"obj":"PRP"},{"id":"T6984","span":{"begin":788,"end":791},"obj":"MD"},{"id":"T6985","span":{"begin":802,"end":806},"obj":"NN"},{"id":"T6986","span":{"begin":807,"end":809},"obj":"IN"},{"id":"T6987","span":{"begin":810,"end":815},"obj":"DT"},{"id":"T6988","span":{"begin":816,"end":821},"obj":"NNS"},{"id":"T6989","span":{"begin":821,"end":822},"obj":"."},{"id":"T6990","span":{"begin":822,"end":880},"obj":"sentence"},{"id":"T6991","span":{"begin":823,"end":830},"obj":"RB"},{"id":"T6992","span":{"begin":831,"end":838},"obj":"VBN"},{"id":"T6993","span":{"begin":843,"end":851},"obj":"VBN"},{"id":"T6994","span":{"begin":839,"end":842},"obj":"VBP"},{"id":"T6995","span":{"begin":852,"end":854},"obj":"TO"},{"id":"T6996","span":{"begin":855,"end":862},"obj":"VB"},{"id":"T6997","span":{"begin":863,"end":867},"obj":"DT"},{"id":"T6998","span":{"begin":868,"end":879},"obj":"NN"},{"id":"T6999","span":{"begin":879,"end":880},"obj":"."},{"id":"T6798","span":{"begin":0,"end":4},"obj":"sentence"},{"id":"T6799","span":{"begin":3,"end":4},"obj":"NNS"},{"id":"T6800","span":{"begin":0,"end":1},"obj":"NN"},{"id":"T6801","span":{"begin":1,"end":2},"obj":"JJ"},{"id":"T6802","span":{"begin":4,"end":6},"obj":"sentence"},{"id":"T6810","span":{"begin":21,"end":31},"obj":"NN"},{"id":"T6811","span":{"begin":41,"end":43},"obj":"IN"},{"id":"T6812","span":{"begin":44,"end":48},"obj":"NN"},{"id":"T6813","span":{"begin":55,"end":60},"obj":"NNS"},{"id":"T6814","span":{"begin":48,"end":49},"obj":"SYM"},{"id":"T6803","span":{"begin":5,"end":6},"obj":"NN"},{"id":"T6804","span":{"begin":4,"end":5},"obj":"NN"},{"id":"T6805","span":{"begin":6,"end":132},"obj":"sentence"},{"id":"T6806","span":{"begin":6,"end":11},"obj":"VBD"},{"id":"T6807","span":{"begin":12,"end":15},"obj":"DT"},{"id":"T6808","span":{"begin":32,"end":40},"obj":"NNS"},{"id":"T6809","span":{"begin":16,"end":20},"obj":"NN"},{"id":"T6896","span":{"begin":403,"end":410},"obj":"NN"}],"relations":[{"id":"R1653","pred":"dobj","subj":"T6822","obj":"T6818"},{"id":"R1654","pred":"compound","subj":"T6823","obj":"T6822"},{"id":"R1655","pred":"acl","subj":"T6824","obj":"T6822"},{"id":"R1656","pred":"punct","subj":"T6825","obj":"T6826"},{"id":"R1657","pred":"nummod","subj":"T6826","obj":"T6827"},{"id":"R1658","pred":"dobj","subj":"T6827","obj":"T6824"},{"id":"R1659","pred":"punct","subj":"T6828","obj":"T6806"},{"id":"R1660","pred":"prep","subj":"T6830","obj":"T6831"},{"id":"R1661","pred":"pobj","subj":"T6832","obj":"T6830"},{"id":"R1662","pred":"prep","subj":"T6833","obj":"T6832"},{"id":"R1663","pred":"compound","subj":"T6834","obj":"T6835"},{"id":"R1664","pred":"pobj","subj":"T6835","obj":"T6833"},{"id":"R1665","pred":"compound","subj":"T6836","obj":"T6835"},{"id":"R1666","pred":"punct","subj":"T6837","obj":"T6831"},{"id":"R1667","pred":"nsubjpass","subj":"T6838","obj":"T6831"},{"id":"R1668","pred":"auxpass","subj":"T6839","obj":"T6831"},{"id":"R1669","pred":"prep","subj":"T6840","obj":"T6831"},{"id":"R1670","pred":"det","subj":"T6841","obj":"T6842"},{"id":"R1671","pred":"pobj","subj":"T6842","obj":"T6840"},{"id":"R1672","pred":"acl","subj":"T6843","obj":"T6842"},{"id":"R1673","pred":"prep","subj":"T6844","obj":"T6843"},{"id":"R1674","pred":"det","subj":"T6845","obj":"T6846"},{"id":"R1675","pred":"pobj","subj":"T6846","obj":"T6844"},{"id":"R1676","pred":"amod","subj":"T6847","obj":"T6846"},{"id":"R1677","pred":"prep","subj":"T6848","obj":"T6843"},{"id":"R1678","pred":"nmod","subj":"T6849","obj":"T6850"},{"id":"R1679","pred":"pobj","subj":"T6850","obj":"T6848"},{"id":"R1680","pred":"punct","subj":"T6851","obj":"T6849"},{"id":"R1681","pred":"punct","subj":"T6852","obj":"T6849"},{"id":"R1682","pred":"punct","subj":"T6853","obj":"T6849"},{"id":"R1683","pred":"compound","subj":"T6854","obj":"T6850"},{"id":"R1684","pred":"punct","subj":"T6855","obj":"T6856"},{"id":"R1685","pred":"parataxis","subj":"T6856","obj":"T6842"},{"id":"R1686","pred":"compound","subj":"T6857","obj":"T6856"},{"id":"R1687","pred":"punct","subj":"T6858","obj":"T6856"},{"id":"R1688","pred":"punct","subj":"T6859","obj":"T6831"},{"id":"R1689","pred":"det","subj":"T6861","obj":"T6862"},{"id":"R1690","pred":"nsubj","subj":"T6862","obj":"T6863"},{"id":"R1691","pred":"prep","subj":"T6864","obj":"T6862"},{"id":"R1692","pred":"compound","subj":"T6865","obj":"T6866"},{"id":"R1693","pred":"compound","subj":"T6866","obj":"T6867"},{"id":"R1694","pred":"pobj","subj":"T6867","obj":"T6864"},{"id":"R1695","pred":"compound","subj":"T6868","obj":"T6867"},{"id":"R1696","pred":"punct","subj":"T6869","obj":"T6867"},{"id":"R1697","pred":"amod","subj":"T6870","obj":"T6871"},{"id":"R1698","pred":"prep","subj":"T6871","obj":"T6867"},{"id":"R1699","pred":"pobj","subj":"T6872","obj":"T6871"},{"id":"R1700","pred":"cc","subj":"T6873","obj":"T6872"},{"id":"R1701","pred":"conj","subj":"T6874","obj":"T6872"},{"id":"R1702","pred":"punct","subj":"T6875","obj":"T6874"},{"id":"R1703","pred":"nummod","subj":"T6876","obj":"T6874"},{"id":"R1704","pred":"punct","subj":"T6877","obj":"T6863"},{"id":"R1705","pred":"acomp","subj":"T6878","obj":"T6863"},{"id":"R1706","pred":"prep","subj":"T6879","obj":"T6863"},{"id":"R1707","pred":"nmod","subj":"T6880","obj":"T6881"},{"id":"R1708","pred":"pobj","subj":"T6881","obj":"T6879"},{"id":"R1709","pred":"punct","subj":"T6882","obj":"T6880"},{"id":"R1710","pred":"punct","subj":"T6883","obj":"T6880"},{"id":"R1711","pred":"punct","subj":"T6884","obj":"T6880"},{"id":"R1712","pred":"compound","subj":"T6885","obj":"T6881"},{"id":"R1713","pred":"punct","subj":"T6886","obj":"T6863"},{"id":"R1714","pred":"nsubj","subj":"T6888","obj":"T6889"},{"id":"R1715","pred":"amod","subj":"T6890","obj":"T6891"},{"id":"R1716","pred":"dobj","subj":"T6891","obj":"T6889"},{"id":"R1717","pred":"nmod","subj":"T6892","obj":"T6891"},{"id":"R1718","pred":"punct","subj":"T6893","obj":"T6892"},{"id":"R1719","pred":"nummod","subj":"T6894","obj":"T6892"},{"id":"R1720","pred":"prep","subj":"T6895","obj":"T6891"},{"id":"R1721","pred":"compound","subj":"T6896","obj":"T6897"},{"id":"R1722","pred":"pobj","subj":"T6897","obj":"T6895"},{"id":"R1723","pred":"prep","subj":"T6898","obj":"T6889"},{"id":"R1724","pred":"compound","subj":"T6899","obj":"T6900"},{"id":"R1725","pred":"pobj","subj":"T6900","obj":"T6898"},{"id":"R1726","pred":"punct","subj":"T6901","obj":"T6902"},{"id":"R1727","pred":"parataxis","subj":"T6902","obj":"T6889"},{"id":"R1728","pred":"compound","subj":"T6903","obj":"T6902"},{"id":"R1729","pred":"punct","subj":"T6904","obj":"T6902"},{"id":"R1730","pred":"punct","subj":"T6905","obj":"T6889"},{"id":"R1731","pred":"det","subj":"T6907","obj":"T6908"},{"id":"R1732","pred":"nsubj","subj":"T6908","obj":"T6912"},{"id":"R1733","pred":"amod","subj":"T6909","obj":"T6908"},{"id":"R1734","pred":"compound","subj":"T6910","obj":"T6911"},{"id":"R1735","pred":"compound","subj":"T6911","obj":"T6908"},{"id":"R1736","pred":"acomp","subj":"T6913","obj":"T6912"},{"id":"R1737","pred":"prep","subj":"T6914","obj":"T6912"},{"id":"R1738","pred":"compound","subj":"T6915","obj":"T6916"},{"id":"R1739","pred":"pobj","subj":"T6916","obj":"T6914"},{"id":"R1740","pred":"compound","subj":"T6917","obj":"T6916"},{"id":"R1741","pred":"cc","subj":"T6918","obj":"T6916"},{"id":"R1742","pred":"nmod","subj":"T6919","obj":"T6920"},{"id":"R1743","pred":"conj","subj":"T6920","obj":"T6916"},{"id":"R1744","pred":"punct","subj":"T6921","obj":"T6919"},{"id":"R1745","pred":"punct","subj":"T6922","obj":"T6919"},{"id":"R1746","pred":"punct","subj":"T6923","obj":"T6919"},{"id":"R1747","pred":"compound","subj":"T6924","obj":"T6920"},{"id":"R1748","pred":"punct","subj":"T6925","obj":"T6912"},{"id":"R1749","pred":"amod","subj":"T6927","obj":"T6928"},{"id":"R1750","pred":"nsubj","subj":"T6928","obj":"T6929"},{"id":"R1751","pred":"det","subj":"T6930","obj":"T6931"},{"id":"R1752","pred":"dobj","subj":"T6931","obj":"T6929"},{"id":"R1753","pred":"amod","subj":"T6932","obj":"T6933"},{"id":"R1754","pred":"nummod","subj":"T6933","obj":"T6931"},{"id":"R1755","pred":"quantmod","subj":"T6934","obj":"T6933"},{"id":"R1756","pred":"prep","subj":"T6935","obj":"T6929"},{"id":"R1757","pred":"nmod","subj":"T6936","obj":"T6937"},{"id":"R1758","pred":"pobj","subj":"T6937","obj":"T6935"},{"id":"R1759","pred":"punct","subj":"T6938","obj":"T6936"},{"id":"R1760","pred":"punct","subj":"T6939","obj":"T6936"},{"id":"R1761","pred":"punct","subj":"T6940","obj":"T6936"},{"id":"R1762","pred":"punct","subj":"T6941","obj":"T6929"},{"id":"R1763","pred":"prep","subj":"T6942","obj":"T6929"},{"id":"R1764","pred":"pobj","subj":"T6943","obj":"T6942"},{"id":"R1765","pred":"punct","subj":"T6944","obj":"T6943"},{"id":"R1766","pred":"nummod","subj":"T6945","obj":"T6943"},{"id":"R1767","pred":"punct","subj":"T6946","obj":"T6943"},{"id":"R1768","pred":"conj","subj":"T6947","obj":"T6943"},{"id":"R1769","pred":"punct","subj":"T6948","obj":"T6947"},{"id":"R1770","pred":"conj","subj":"T6949","obj":"T6947"},{"id":"R1771","pred":"punct","subj":"T6950","obj":"T6949"},{"id":"R1772","pred":"conj","subj":"T6951","obj":"T6949"},{"id":"R1773","pred":"punct","subj":"T6952","obj":"T6951"},{"id":"R1774","pred":"conj","subj":"T6953","obj":"T6951"},{"id":"R1775","pred":"cc","subj":"T6954","obj":"T6953"},{"id":"R1776","pred":"conj","subj":"T6955","obj":"T6953"},{"id":"R1777","pred":"punct","subj":"T6956","obj":"T6929"},{"id":"R1778","pred":"det","subj":"T6958","obj":"T6959"},{"id":"R1779","pred":"nsubjpass","subj":"T6959","obj":"T6960"},{"id":"R1780","pred":"aux","subj":"T6961","obj":"T6960"},{"id":"R1781","pred":"auxpass","subj":"T6962","obj":"T6960"},{"id":"R1782","pred":"advmod","subj":"T6963","obj":"T6960"},{"id":"R1637","pred":"nmod","subj":"T6804","obj":"T6803"},{"id":"R1638","pred":"det","subj":"T6807","obj":"T6808"},{"id":"R1639","pred":"dobj","subj":"T6808","obj":"T6806"},{"id":"R1640","pred":"compound","subj":"T6809","obj":"T6808"},{"id":"R1641","pred":"compound","subj":"T6810","obj":"T6808"},{"id":"R1642","pred":"prep","subj":"T6811","obj":"T6808"},{"id":"R1643","pred":"nmod","subj":"T6812","obj":"T6813"},{"id":"R1644","pred":"pobj","subj":"T6813","obj":"T6811"},{"id":"R1645","pred":"punct","subj":"T6814","obj":"T6812"},{"id":"R1646","pred":"punct","subj":"T6815","obj":"T6812"},{"id":"R1647","pred":"punct","subj":"T6816","obj":"T6812"},{"id":"R1648","pred":"compound","subj":"T6817","obj":"T6813"},{"id":"R1649","pred":"advcl","subj":"T6818","obj":"T6806"},{"id":"R1650","pred":"npadvmod","subj":"T6819","obj":"T6820"},{"id":"R1651","pred":"amod","subj":"T6820","obj":"T6822"},{"id":"R1652","pred":"punct","subj":"T6821","obj":"T6820"},{"id":"R1783","pred":"cc","subj":"T6964","obj":"T6963"},{"id":"R1784","pred":"conj","subj":"T6965","obj":"T6963"},{"id":"R1785","pred":"agent","subj":"T6966","obj":"T6960"},{"id":"R1786","pred":"pobj","subj":"T6967","obj":"T6966"},{"id":"R1787","pred":"punct","subj":"T6968","obj":"T6960"},{"id":"R1788","pred":"mark","subj":"T6970","obj":"T6971"},{"id":"R1789","pred":"advcl","subj":"T6971","obj":"T6973"},{"id":"R1790","pred":"nsubj","subj":"T6972","obj":"T6971"},{"id":"R1791","pred":"det","subj":"T6974","obj":"T6975"},{"id":"R1792","pred":"dobj","subj":"T6975","obj":"T6971"},{"id":"R1793","pred":"nmod","subj":"T6976","obj":"T6977"},{"id":"R1794","pred":"nmod","subj":"T6977","obj":"T6975"},{"id":"R1795","pred":"punct","subj":"T6978","obj":"T6977"},{"id":"R1796","pred":"npadvmod","subj":"T6979","obj":"T6980"},{"id":"R1797","pred":"amod","subj":"T6980","obj":"T6975"},{"id":"R1798","pred":"punct","subj":"T6981","obj":"T6980"},{"id":"R1799","pred":"punct","subj":"T6982","obj":"T6973"},{"id":"R1800","pred":"nsubj","subj":"T6983","obj":"T6973"},{"id":"R1801","pred":"aux","subj":"T6984","obj":"T6973"},{"id":"R1802","pred":"dobj","subj":"T6985","obj":"T6973"},{"id":"R1803","pred":"prep","subj":"T6986","obj":"T6985"},{"id":"R1804","pred":"det","subj":"T6987","obj":"T6988"},{"id":"R1805","pred":"pobj","subj":"T6988","obj":"T6986"},{"id":"R1806","pred":"punct","subj":"T6989","obj":"T6973"},{"id":"R1807","pred":"advmod","subj":"T6991","obj":"T6992"},{"id":"R1808","pred":"nsubjpass","subj":"T6992","obj":"T6993"},{"id":"R1809","pred":"auxpass","subj":"T6994","obj":"T6993"},{"id":"R1810","pred":"aux","subj":"T6995","obj":"T6996"},{"id":"R1811","pred":"advcl","subj":"T6996","obj":"T6993"},{"id":"R1812","pred":"det","subj":"T6997","obj":"T6998"},{"id":"R1813","pred":"dobj","subj":"T6998","obj":"T6996"},{"id":"R1814","pred":"punct","subj":"T6999","obj":"T6993"}],"text":"We examined the gene expression profiles of ESG1-/- ES cells using oligonucleotide-based DNA microarrays representing ~20,000 genes. In comparison to control ES cells, ESG1 was identified as the gene reduced to the greatest extent in ESG1-/- ES cells (Figure 6A). The expression of ES cell marker genes, such as Nanog and Oct3/4, was normal in ESG1-/- ES cells. We confirmed normal Oct3/4 expression at protein levels by Western blot (Figure 6B). The overall gene expression profiles were similar between control ES cells and ESG1-/- ES cells. Several genes exhibited a greater than two-fold reduction in ESG1-/- cells, including Krt1-8, Pem, Ctgf, Ptgs2, Igf2 and Inhba. These genes might be regulated directly or indirectly by ESG1. Since ESG1 contains a KH-type RNA-binding domain, it may stabilize mRNA of these genes. Further studied are required to clarify this possibility."}