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PMC:1420271 / 10268-10733 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6141 28-36 CL:0002322 denotes ES cells
T6142 62-68 SO:0000440 denotes vector
T6143 92-100 CL:0002322 denotes ES cells
T6144 109-113 CHEBI:42768 denotes G418
T6145 164-168 PR:000006847 denotes ESG1
T6146 244-248 PR:000006847 denotes ESG1
T6147 301-307 SO:0000440 denotes vector
T6148 330-336 SO:0000440 denotes vector
T6149 419-425 SO:0000440 denotes vector

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6263 28-36 CL:0002322 denotes ES cells
T6264 31-36 CL_GO_EXT:cell denotes cells
T6265 56-61 GO_EXT:beta_geo denotes β-geo
T6266 62-68 SO_EXT:0000440 denotes vector
T6267 92-100 CL:0002322 denotes ES cells
T6268 95-100 CL_GO_EXT:cell denotes cells
T6269 109-113 CHEBI:42768 denotes G418
T6270 164-168 PR_EXT:000006847 denotes ESG1
T6271 169-177 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6272 244-248 PR_EXT:000006847 denotes ESG1
T6273 258-263 CL_GO_EXT:cell denotes cells
T6274 283-289 SO_EXT:sequence_cloned_entity denotes clones
T6275 295-300 GO_EXT:beta_geo denotes β-geo
T6276 301-307 SO_EXT:0000440 denotes vector
T6277 312-320 SO_EXT:sequence_substitution_process denotes replaced
T6278 330-336 SO_EXT:0000440 denotes vector
T6279 352-357 CL_GO_EXT:cell denotes cells
T6280 401-407 SO_EXT:sequence_cloned_entity denotes clones
T6281 413-418 GO_EXT:beta_geo denotes β-geo
T6282 419-425 SO_EXT:0000440 denotes vector

craft-sa-dev

Id Subject Object Predicate Lexical cue
T6561 0-4 sentence denotes To o
T6562 0-1 VBN denotes T
T6563 1-2 NN denotes o
T6564 3-4 IN denotes o
T6565 4-6 sentence denotes bt
T6566 4-5 IN denotes b
T6567 5-6 JJ denotes t
T6568 6-12 sentence denotes ain ho
T6569 10-12 VBN denotes ho
T6570 6-7 CC denotes a
T6611 139-141 , denotes ,
T6612 141-143 CD denotes 49
T6613 149-159 JJ denotes homozygous
T6614 160-163 IN denotes for
T6615 164-168 NN denotes ESG1
T6616 169-177 NN denotes deletion
T6617 177-178 . denotes .
T6618 178-276 sentence denotes Northern blot and western blot analyses confirmed the absence of ESG1 in these cells (Figure 4C).
T6619 179-187 NNP denotes Northern
T6620 188-192 NN denotes blot
T6621 210-218 NNS denotes analyses
T6622 193-196 CC denotes and
T6623 197-204 NNP denotes western
T6624 205-209 NN denotes blot
T6625 219-228 VBD denotes confirmed
T6626 229-232 DT denotes the
T6627 233-240 NN denotes absence
T6628 241-243 IN denotes of
T6629 244-248 NN denotes ESG1
T6630 249-251 IN denotes in
T6631 252-257 DT denotes these
T6632 258-263 NNS denotes cells
T6633 264-265 -LRB- denotes (
T6634 272-274 NN denotes 4C
T6635 265-271 NN denotes Figure
T6636 274-275 -RRB- denotes )
T6637 275-276 . denotes .
T6638 276-380 sentence denotes In 29 clones, the β-geo vector had replaced the HygR vector, such that the cells remained heterozygous.
T6639 277-279 IN denotes In
T6640 312-320 VBN denotes replaced
T6641 280-282 CD denotes 29
T6642 283-289 NNS denotes clones
T6643 289-291 , denotes ,
T6644 291-294 DT denotes the
T6645 301-307 NN denotes vector
T6646 295-296 NN denotes β
T6647 297-300 NN denotes geo
T6648 296-297 HYPH denotes -
T6649 308-311 VBD denotes had
T6650 321-324 DT denotes the
T6651 330-336 NN denotes vector
T6652 325-329 NN denotes HygR
T6653 336-338 , denotes ,
T6654 338-342 JJ denotes such
T6655 358-366 VBD denotes remained
T6656 343-347 IN denotes that
T6657 348-351 DT denotes the
T6658 352-357 NNS denotes cells
T6659 367-379 JJ denotes heterozygous
T6660 379-380 . denotes .
T6661 380-465 sentence denotes In the remaining 27 clones, the β-geo vector was integrated at non-homologous sites.
T6662 381-383 IN denotes In
T6663 430-440 VBN denotes integrated
T6664 384-387 DT denotes the
T6665 401-407 NNS denotes clones
T6666 388-397 VBG denotes remaining
T6667 398-400 CD denotes 27
T6668 407-409 , denotes ,
T6669 409-412 DT denotes the
T6670 419-425 NN denotes vector
T6671 413-414 NN denotes β
T6672 415-418 NN denotes geo
T6673 414-415 HYPH denotes -
T6674 426-429 VBD denotes was
T6675 441-443 IN denotes at
T6676 444-458 JJ denotes non-homologous
T6677 459-464 NNS denotes sites
T6678 464-465 . denotes .
T6573 12-14 sentence denotes mo
T6574 12-13 VBG denotes m
T6575 13-14 JJ denotes o
T6576 14-21 sentence denotes zygous
T6607 109-113 NN denotes G418
T6608 114-123 JJ denotes resistant
T6609 113-114 HYPH denotes -
T6610 133-139 VBN denotes tested
T6571 7-8 WDT denotes i
T6572 8-9 NNP denotes n
T6577 14-20 JJ denotes zygous
T6578 21-23 sentence denotes mu
T6579 21-22 VBN denotes m
T6580 22-23 RB denotes u
T6581 23-28 sentence denotes tant
T6582 23-24 DT denotes t
T6583 24-26 NN denotes an
T6584 26-27 NNS denotes t
T6585 28-101 sentence denotes ES cells, we introduced the β-geo vector into HygR heterozygous ES cells.
T6586 41-51 VBD denotes introduced
T6587 31-36 NNS denotes cells
T6588 28-30 NN denotes ES
T6589 36-38 , denotes ,
T6590 38-40 PRP denotes we
T6591 52-55 DT denotes the
T6592 62-68 NN denotes vector
T6593 56-57 NN denotes β
T6594 58-61 NN denotes geo
T6595 57-58 HYPH denotes -
T6596 69-73 IN denotes into
T6597 74-78 NN denotes HygR
T6598 79-91 JJ denotes heterozygous
T6599 95-100 NNS denotes cells
T6600 92-94 NN denotes ES
T6601 100-101 . denotes .
T6602 101-178 sentence denotes Of 105 G418-resistant colonies tested, 49 were homozygous for ESG1 deletion.
T6603 102-104 IN denotes Of
T6604 144-148 VBD denotes were
T6605 105-108 CD denotes 105
T6606 124-132 NNS denotes colonies
R1443 T6562 T6563 amod T,o
R1444 T6564 T6563 prep o,o
R1469 T6613 T6604 acomp homozygous,were
R1470 T6614 T6613 prep for,homozygous
R1471 T6615 T6616 compound ESG1,deletion
R1472 T6616 T6614 pobj deletion,for
R1473 T6617 T6604 punct .,were
R1474 T6619 T6620 nmod Northern,blot
R1475 T6620 T6621 nmod blot,analyses
R1476 T6621 T6625 nsubj analyses,confirmed
R1477 T6622 T6620 cc and,blot
R1478 T6623 T6624 compound western,blot
R1479 T6624 T6620 conj blot,blot
R1480 T6626 T6627 det the,absence
R1481 T6627 T6625 dobj absence,confirmed
R1482 T6628 T6627 prep of,absence
R1483 T6629 T6628 pobj ESG1,of
R1484 T6630 T6627 prep in,absence
R1485 T6631 T6632 det these,cells
R1486 T6632 T6630 pobj cells,in
R1487 T6633 T6634 punct (,4C
R1488 T6634 T6625 parataxis 4C,confirmed
R1489 T6635 T6634 compound Figure,4C
R1490 T6636 T6634 punct ),4C
R1491 T6637 T6625 punct .,confirmed
R1492 T6639 T6640 prep In,replaced
R1493 T6641 T6642 nummod 29,clones
R1494 T6642 T6639 pobj clones,In
R1495 T6643 T6640 punct ", ",replaced
R1496 T6644 T6645 det the,vector
R1497 T6645 T6640 nsubj vector,replaced
R1498 T6646 T6647 compound β,geo
R1499 T6647 T6645 compound geo,vector
R1500 T6648 T6647 punct -,geo
R1501 T6649 T6640 aux had,replaced
R1502 T6650 T6651 det the,vector
R1503 T6651 T6640 dobj vector,replaced
R1504 T6652 T6651 compound HygR,vector
R1505 T6653 T6640 punct ", ",replaced
R1506 T6654 T6655 amod such,remained
R1507 T6655 T6640 advcl remained,replaced
R1508 T6656 T6655 mark that,remained
R1509 T6657 T6658 det the,cells
R1510 T6658 T6655 nsubj cells,remained
R1511 T6659 T6655 acomp heterozygous,remained
R1512 T6660 T6640 punct .,replaced
R1513 T6662 T6663 prep In,integrated
R1514 T6664 T6665 det the,clones
R1515 T6665 T6662 pobj clones,In
R1516 T6666 T6665 amod remaining,clones
R1517 T6667 T6665 nummod 27,clones
R1518 T6668 T6663 punct ", ",integrated
R1519 T6669 T6670 det the,vector
R1520 T6670 T6663 nsubjpass vector,integrated
R1521 T6671 T6672 compound β,geo
R1522 T6672 T6670 compound geo,vector
R1523 T6673 T6672 punct -,geo
R1524 T6674 T6663 auxpass was,integrated
R1525 T6675 T6663 prep at,integrated
R1526 T6676 T6677 amod non-homologous,sites
R1527 T6677 T6675 pobj sites,at
R1528 T6678 T6663 punct .,integrated
R1445 T6582 T6583 det t,an
R1446 T6588 T6587 compound ES,cells
R1447 T6589 T6586 punct ", ",introduced
R1448 T6590 T6586 nsubj we,introduced
R1449 T6591 T6592 det the,vector
R1450 T6592 T6586 dobj vector,introduced
R1451 T6593 T6594 compound β,geo
R1452 T6594 T6592 compound geo,vector
R1453 T6595 T6594 punct -,geo
R1454 T6596 T6586 prep into,introduced
R1455 T6597 T6598 npadvmod HygR,heterozygous
R1456 T6598 T6599 amod heterozygous,cells
R1457 T6599 T6596 pobj cells,into
R1458 T6600 T6599 compound ES,cells
R1459 T6601 T6586 punct .,introduced
R1460 T6603 T6604 prep Of,were
R1461 T6605 T6606 nummod 105,colonies
R1462 T6606 T6603 pobj colonies,Of
R1463 T6607 T6608 npadvmod G418,resistant
R1464 T6608 T6606 amod resistant,colonies
R1465 T6609 T6608 punct -,resistant
R1466 T6610 T6606 acl tested,colonies
R1467 T6611 T6604 punct ", ",were
R1468 T6612 T6604 nsubj 49,were