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PMC:1359074 / 9025-9184 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4651 154-158 NN denotes mice
T4650 151-153 JJ denotes WT
T4649 148-150 IN denotes in
T4648 139-147 VB denotes observed
T4647 128-138 NN denotes expression
T4646 125-127 IN denotes in
T4645 117-124 NN denotes decline
T4644 113-116 DT denotes the
T4643 110-112 TO denotes to
T4642 101-109 NN denotes contrast
T4641 98-100 IN denotes in
T4640 96-97 -COMMA- denotes ,
T4639 92-96 NN denotes mice
T4638 85-91 JJ denotes mutant
T4637 82-84 IN denotes in
T4636 75-81 NN denotes points
T4635 70-74 NN denotes time
T4634 65-69 DT denotes both
T4633 62-64 IN denotes at
T4632 55-61 NN denotes levels
T4631 50-54 JJ denotes high
T4630 47-49 IN denotes at
T4629 37-46 VB denotes expressed
T4628 34-36 VB denotes is
T4627 29-33 NN denotes gene
T4626 26-28 JJ denotes ɛy
T4625 22-25 DT denotes the
T4624 20-21 -COMMA- denotes ,
T4623 19-20 CD denotes 1
T4622 12-18 NN denotes Figure
T4621 9-11 IN denotes in
T4620 3-8 VB denotes shown
T4619 0-2 IN denotes As
R3190 T4620 T4619 arg2Of shown,As
R3191 T4620 T4621 arg1Of shown,in
R3192 T4622 T4621 arg2Of Figure,in
R3193 T4622 T4623 arg1Of Figure,1
R3194 T4627 T4625 arg1Of gene,the
R3195 T4627 T4626 arg1Of gene,ɛy
R3196 T4627 T4628 arg1Of gene,is
R3197 T4627 T4629 arg2Of gene,expressed
R3198 T4629 T4619 arg1Of expressed,As
R3199 T4629 T4624 arg1Of expressed,","
R3200 T4629 T4628 arg2Of expressed,is
R3201 T4629 T4630 arg1Of expressed,at
R3202 T4629 T4633 arg1Of expressed,at
R3203 T4629 T4637 arg1Of expressed,in
R3204 T4629 T4640 arg1Of expressed,","
R3205 T4629 T4641 arg1Of expressed,in
R3206 T4632 T4630 arg2Of levels,at
R3207 T4632 T4631 arg1Of levels,high
R3208 T4636 T4633 arg2Of points,at
R3209 T4636 T4634 arg1Of points,both
R3210 T4636 T4635 arg1Of points,time
R3211 T4639 T4637 arg2Of mice,in
R3212 T4639 T4638 arg1Of mice,mutant
R3213 T4641 T4643 arg1Of in,to
R3214 T4642 T4641 arg2Of contrast,in
R3215 T4645 T4641 arg3Of decline,in
R3216 T4645 T4644 arg1Of decline,the
R3217 T4645 T4646 arg1Of decline,in
R3218 T4647 T4646 arg2Of expression,in
R3219 T4647 T4648 arg2Of expression,observed
R3220 T4648 T4649 arg1Of observed,in
R3221 T4651 T4649 arg2Of mice,in
R3222 T4651 T4650 arg1Of mice,WT

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4479 26-28 Protein denotes ɛy

sentences

Id Subject Object Predicate Lexical cue
T4431 0-159 Sentence denotes As shown in Figure 1, the ɛy gene is expressed at high levels at both time points in mutant mice, in contrast to the decline in expression observed in WT mice.
T60 0-159 Sentence denotes As shown in Figure 1, the ɛy gene is expressed at high levels at both time points in mutant mice, in contrast to the decline in expression observed in WT mice.

simple1

Id Subject Object Predicate Lexical cue
T4519 26-28 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5419 37-46 Gene_expression denotes expressed
T5407 26-28 Protein denotes ɛy
R3875 T5407 T5419 themeOf ɛy,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4897 128-138 Gene_expression denotes expression
T4896 37-46 Gene_expression denotes expressed
T4885 26-28 Protein denotes ɛy
R3455 T4885 T4896 themeOf ɛy,expressed
R3456 T4885 T4897 themeOf ɛy,expression

DLUT931

Id Subject Object Predicate Lexical cue
T4935 128-138 Gene_expression denotes expression
T4934 37-46 Gene_expression denotes expressed
T4922 26-28 Protein denotes ɛy
R3467 T4922 T4934 themeOf ɛy,expressed
R3468 T4922 T4935 themeOf ɛy,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5345 151-158 Protein denotes WT mice
T5398 113-158 Regulation denotes the decline in expression observed in WT mice
T5396 9-61 Gene_expression denotes in Figure 1, the ɛy gene is expressed at high levels
T5371 22-33 Protein denotes the ɛy gene
T5367 26-28 Protein denotes ɛy
T5355 85-96 Protein denotes mutant mice
R3867 T5371 T5396 themeOf the ɛy gene,"in Figure 1, the ɛy gene is expressed at high levels"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5092 158-159 . denotes .
T5091 154-158 NNS denotes mice
T5090 151-153 NNP denotes WT
T5089 148-150 IN denotes in
T5088 139-147 VBN denotes observed
T5087 128-138 NN denotes expression
T5086 125-127 IN denotes in
T5085 117-124 NN denotes decline
T5084 113-116 DT denotes the
T5083 110-112 TO denotes to
T5082 101-109 NN denotes contrast
T5081 98-100 IN denotes in
T5080 96-97 , denotes ,
T5079 92-96 NNS denotes mice
T5078 85-91 JJ denotes mutant
T5077 82-84 IN denotes in
T5076 75-81 NNS denotes points
T5075 70-74 NN denotes time
T5074 65-69 DT denotes both
T5073 62-64 IN denotes at
T5072 55-61 NNS denotes levels
T5071 50-54 JJ denotes high
T5070 47-49 IN denotes at
T5069 37-46 VBN denotes expressed
T5068 34-36 VBZ denotes is
T5067 29-33 NN denotes gene
T5066 26-28 JJ denotes ɛy
T5065 22-25 DT denotes the
T5064 20-21 , denotes ,
T5063 19-20 CD denotes 1
T5062 12-18 NN denotes Figure
T5061 9-11 IN denotes in
T5060 3-8 VBN denotes shown
T5059 0-2 IN denotes As
R3590 T5059 T5060 mark As,shown
R3591 T5060 T5069 advcl shown,expressed
R3592 T5061 T5060 prep in,shown
R3593 T5062 T5061 pobj Figure,in
R3594 T5063 T5062 nummod 1,Figure
R3595 T5064 T5069 punct ",",expressed
R3596 T5065 T5067 det the,gene
R3597 T5066 T5067 amod ɛy,gene
R3598 T5067 T5069 nsubjpass gene,expressed
R3599 T5068 T5069 auxpass is,expressed
R3600 T5069 T5069 ROOT expressed,expressed
R3601 T5070 T5069 prep at,expressed
R3602 T5071 T5072 amod high,levels
R3603 T5072 T5070 pobj levels,at
R3604 T5073 T5072 prep at,levels
R3605 T5074 T5075 det both,time
R3606 T5075 T5076 compound time,points
R3607 T5076 T5073 pobj points,at
R3608 T5077 T5072 prep in,levels
R3609 T5078 T5079 amod mutant,mice
R3610 T5079 T5077 pobj mice,in
R3611 T5080 T5069 punct ",",expressed
R3612 T5081 T5069 prep in,expressed
R3613 T5082 T5081 pobj contrast,in
R3614 T5083 T5082 prep to,contrast
R3615 T5084 T5085 det the,decline
R3616 T5085 T5083 pobj decline,to
R3617 T5086 T5085 prep in,decline
R3618 T5087 T5086 pobj expression,in
R3619 T5088 T5085 acl observed,decline
R3620 T5089 T5088 prep in,observed
R3621 T5090 T5091 compound WT,mice
R3622 T5091 T5089 pobj mice,in
R3623 T5092 T5069 punct .,expressed

testone

Id Subject Object Predicate Lexical cue
T4386 128-138 Gene_expression denotes expression
T4385 37-46 Gene_expression denotes expressed
T4374 26-28 Protein denotes ɛy
R3065 T4374 T4386 themeOf ɛy,expression
R3066 T4374 T4385 themeOf ɛy,expressed

test3

Id Subject Object Predicate Lexical cue
T4412 26-28 Protein denotes ɛy
T4397 26-28 Protein denotes ɛy