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PMC:1359074 / 8539-8700 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4561 153-160 NN denotes targets
T4560 142-152 JJ denotes downstream
T4559 137-141 NN denotes Sox6
T4558 128-136 VB denotes identify
T4557 125-127 TO denotes to
T4556 111-124 NN denotes hybridization
T4555 99-110 JJ denotes subtractive
T4554 93-98 VB denotes using
T4553 87-92 NN denotes mouse
T4552 80-86 NN denotes p 100H
T4551 76-79 DT denotes the
T4550 73-75 IN denotes in
T4549 62-72 NN denotes transcript
T4548 50-61 VB denotes upregulated
T4547 47-49 DT denotes an
T4546 44-46 IN denotes as
T4545 33-43 VB denotes identified
T4544 23-32 RB denotes initially
T4543 19-22 VB denotes was
T4542 14-18 NN denotes gene
T4541 7-13 NN denotes globin
T4540 4-6 JJ denotes ɛy
T4539 0-3 DT denotes The
R3110 T4542 T4539 arg1Of gene,The
R3111 T4542 T4540 arg1Of gene,ɛy
R3112 T4542 T4541 arg1Of gene,globin
R3113 T4542 T4543 arg1Of gene,was
R3114 T4542 T4545 arg2Of gene,identified
R3115 T4545 T4543 arg2Of identified,was
R3116 T4545 T4544 arg1Of identified,initially
R3117 T4545 T4546 arg1Of identified,as
R3118 T4549 T4546 arg2Of transcript,as
R3119 T4549 T4547 arg1Of transcript,an
R3120 T4549 T4548 arg2Of transcript,upregulated
R3121 T4549 T4550 arg1Of transcript,in
R3122 T4553 T4550 arg2Of mouse,in
R3123 T4553 T4551 arg1Of mouse,the
R3124 T4553 T4552 arg1Of mouse,p 100H
R3125 T4553 T4554 arg1Of mouse,using
R3126 T4554 T4557 modOf using,to
R3127 T4556 T4554 arg2Of hybridization,using
R3128 T4556 T4555 arg1Of hybridization,subtractive
R3129 T4558 T4557 arg1Of identify,to
R3130 T4561 T4558 arg2Of targets,identify
R3131 T4561 T4559 arg1Of targets,Sox6
R3132 T4561 T4560 arg1Of targets,downstream

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4477 137-141 Protein denotes Sox6
T4476 4-13 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4877 137-141 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T4440 7-13 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T4488 7-13 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T4428 0-161 Sentence denotes The ɛy globin gene was initially identified as an upregulated transcript in the p 100H mouse using subtractive hybridization to identify Sox6 downstream targets.
T57 0-161 Sentence denotes The ɛy globin gene was initially identified as an upregulated transcript in the p 100H mouse using subtractive hybridization to identify Sox6 downstream targets.

simple1

Id Subject Object Predicate Lexical cue
T4517 137-141 Protein denotes Sox6
T4516 4-13 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5418 50-61 Positive_regulation denotes upregulated
T5417 153-160 Regulation denotes targets
T5405 137-141 Protein denotes Sox6
T5404 4-13 Protein denotes ɛy globin
R3873 T5404 T5418 themeOf ɛy globin,upregulated
R3874 T5405 T5417 themeOf Sox6,targets

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4895 153-160 Regulation denotes targets
T4883 137-141 Protein denotes Sox6
T4882 4-13 Protein denotes ɛy globin
R3454 T4883 T4895 themeOf Sox6,targets

DLUT931

Id Subject Object Predicate Lexical cue
T4933 153-160 Regulation denotes targets
T4920 137-141 Protein denotes Sox6
T4919 4-13 Protein denotes ɛy globin
R3466 T4920 T4933 themeOf Sox6,targets

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5400 47-160 Positive_regulation denotes an upregulated transcript in the p 100H mouse using subtractive hybridization to identify Sox6 downstream targets
T5394 0-18 Protein denotes The ɛy globin gene
T5368 7-13 Protein denotes globin
T5357 0-18 Protein denotes The ɛy globin gene
T5348 137-152 Protein denotes Sox6 downstream
T5347 47-160 Protein denotes an upregulated transcript in the p 100H mouse using subtractive hybridization to identify Sox6 downstream targets
R3865 T5347 T5400 themeOf an upregulated transcript in the p 100H mouse using subtractive hybridization to identify Sox6 downstream targets,an upregulated transcript in the p 100H mouse using subtractive hybridization to identify Sox6 downstream targets

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4999 160-161 . denotes .
T4998 153-160 NNS denotes targets
T4997 142-152 JJ denotes downstream
T4996 137-141 JJ denotes Sox6
T4995 128-136 VB denotes identify
T4994 125-127 TO denotes to
T4993 111-124 NN denotes hybridization
T4992 99-110 JJ denotes subtractive
T4991 93-98 VBG denotes using
T4990 87-92 NN denotes mouse
T4989 80-86 JJ denotes p 100H
T4988 76-79 DT denotes the
T4987 73-75 IN denotes in
T4986 62-72 NN denotes transcript
T4985 50-61 JJ denotes upregulated
T4984 47-49 DT denotes an
T4983 44-46 IN denotes as
T4982 33-43 VBN denotes identified
T4981 23-32 RB denotes initially
T4980 19-22 VBD denotes was
T4979 14-18 NN denotes gene
T4978 7-13 NN denotes globin
T4977 4-6 JJ denotes ɛy
T4976 0-3 DT denotes The
R3507 T4976 T4979 det The,gene
R3508 T4977 T4979 amod ɛy,gene
R3509 T4978 T4979 compound globin,gene
R3510 T4979 T4982 nsubjpass gene,identified
R3511 T4980 T4982 auxpass was,identified
R3512 T4981 T4982 advmod initially,identified
R3513 T4982 T4982 ROOT identified,identified
R3514 T4983 T4982 prep as,identified
R3515 T4984 T4986 det an,transcript
R3516 T4985 T4986 amod upregulated,transcript
R3517 T4986 T4983 pobj transcript,as
R3518 T4987 T4986 prep in,transcript
R3519 T4988 T4990 det the,mouse
R3520 T4989 T4990 amod p 100H,mouse
R3521 T4990 T4987 pobj mouse,in
R3522 T4991 T4986 acl using,transcript
R3523 T4992 T4993 amod subtractive,hybridization
R3524 T4993 T4991 dobj hybridization,using
R3525 T4994 T4995 aux to,identify
R3526 T4995 T4991 xcomp identify,using
R3527 T4996 T4998 amod Sox6,targets
R3528 T4997 T4998 amod downstream,targets
R3529 T4998 T4995 dobj targets,identify
R3530 T4999 T4982 punct .,identified

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T4500 50-61 Positive_regulation denotes upregulated
T4499 137-160 Protein denotes Sox6 downstream targets
T4498 7-18 Protein denotes globin gene
R3093 T4498 T4500 themeOf globin gene,upregulated

testone

Id Subject Object Predicate Lexical cue
T4372 137-141 Protein denotes Sox6
T4371 4-13 Protein denotes ɛy globin

test3

Id Subject Object Predicate Lexical cue
T4410 137-141 Protein denotes Sox6
T4409 4-13 Protein denotes ɛy globin
T4395 137-141 Protein denotes Sox6
T4394 4-13 Protein denotes ɛy globin