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PMC:1359074 / 8160-8311 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2660 144-150 NN denotes globin
T2659 141-143 JJ denotes ɛy
T2658 138-140 IN denotes of
T2657 130-137 NN denotes pattern
T2656 119-129 NN denotes expression
T2655 110-118 JJ denotes opposite
T2654 106-109 DT denotes the
T2653 104-105 -COMMA- denotes ,
T2652 99-104 NN denotes liver
T2651 93-98 JJ denotes fetal
T2650 90-92 IN denotes in
T2649 80-89 VB denotes expressed
T2648 77-79 VB denotes is
T2647 73-76 CC denotes but
T2646 71-72 -COMMA- denotes ,
T2645 64-71 NN denotes islands
T2644 58-63 NN denotes blood
T2643 54-57 NN denotes sac
T2642 49-53 NN denotes yolk
T2641 46-48 IN denotes in
T2640 36-45 VB denotes expressed
T2639 32-35 RB denotes not
T2638 29-31 VB denotes is
T2637 24-28 NN denotes Sox6
T2636 22-23 -COMMA- denotes ,
T2635 18-22 NN denotes mice
T2634 16-17 -RRB- denotes )
T2633 14-16 JJ denotes WT
T2632 13-14 -LRB- denotes (
T2631 3-12 JJ denotes wild-type
T2630 0-2 IN denotes In
R1725 T2657 T2653 arg2Of pattern,","
R1726 T2657 T2654 arg1Of pattern,the
R1727 T2657 T2655 arg1Of pattern,opposite
R1728 T2657 T2656 arg1Of pattern,expression
R1729 T2657 T2658 arg1Of pattern,of
R1730 T2660 T2658 arg2Of globin,of
R1731 T2660 T2659 arg1Of globin,ɛy
R1801 T2631 T2632 arg1Of wild-type,(
R1803 T2633 T2632 arg2Of WT,(
R1804 T2634 T2632 arg3Of ),(
R1806 T2635 T2630 arg2Of mice,In
R1807 T2635 T2631 arg1Of mice,wild-type
R1810 T2637 T2638 arg1Of Sox6,is
R1812 T2637 T2640 arg2Of Sox6,expressed
R1813 T2637 T2648 arg1Of Sox6,is
R1814 T2637 T2649 arg2Of Sox6,expressed
R1815 T2640 T2638 arg2Of expressed,is
R1817 T2640 T2639 arg1Of expressed,not
R1818 T2640 T2641 arg1Of expressed,in
R1819 T2640 T2647 arg1Of expressed,but
R1821 T2645 T2641 arg2Of islands,in
R1823 T2645 T2642 arg1Of islands,yolk
R1824 T2645 T2643 arg1Of islands,sac
R1825 T2645 T2644 arg1Of islands,blood
R1827 T2647 T2630 arg1Of but,In
R1829 T2647 T2636 arg1Of but,","
R1830 T2647 T2646 arg1Of but,","
R1831 T2649 T2647 arg2Of expressed,but
R1833 T2649 T2648 arg2Of expressed,is
R1834 T2649 T2650 arg1Of expressed,in
R1835 T2652 T2650 arg2Of liver,in
R1838 T2652 T2651 arg1Of liver,fetal
R1839 T2652 T2653 arg1Of liver,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1465 141-150 Protein denotes ɛy globin
T1464 24-28 Protein denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T1275 144-150 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T1481 144-150 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T1497 49-53 http://purl.obolibrary.org/obo/GO_0060417 denotes yolk

sentences

Id Subject Object Predicate Lexical cue
T1233 0-151 Sentence denotes In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin.
T53 0-151 Sentence denotes In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin.

simple1

Id Subject Object Predicate Lexical cue
T1692 141-150 Protein denotes ɛy globin
T1691 24-28 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4297 119-129 Gene_expression denotes expression
T4296 36-45 Gene_expression denotes expressed
T4295 80-89 Gene_expression denotes expressed
T4270 141-150 Protein denotes ɛy globin
T4269 24-28 Protein denotes Sox6
R3052 T4269 T4296 themeOf Sox6,expressed
R3053 T4269 T4295 themeOf Sox6,expressed
R3054 T4270 T4295 themeOf ɛy globin,expressed
R3055 T4270 T4297 themeOf ɛy globin,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2760 119-129 Gene_expression denotes expression
T2759 80-89 Gene_expression denotes expressed
T2758 36-45 Gene_expression denotes expressed
T2734 141-150 Protein denotes ɛy globin
T2733 24-28 Protein denotes Sox6
R1842 T2733 T2758 themeOf Sox6,expressed
R1843 T2733 T2759 themeOf Sox6,expressed
R1845 T2734 T2760 themeOf ɛy globin,expression

DLUT931

Id Subject Object Predicate Lexical cue
T2843 119-129 Gene_expression denotes expression
T2842 80-89 Gene_expression denotes expressed
T2841 36-45 Gene_expression denotes expressed
T2812 141-150 Protein denotes ɛy globin
T2811 24-28 Protein denotes Sox6
R1876 T2811 T2841 themeOf Sox6,expressed
R1877 T2811 T2842 themeOf Sox6,expressed
R1879 T2812 T2843 themeOf ɛy globin,expression
R1880 T2812 T2842 themeOf ɛy globin,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue Negation
T4099 49-71 Entity denotes yolk sac blood islands
T4095 18-22 Protein denotes mice
T4050 18-28 Protein denotes mice, Sox6
T4046 141-150 Protein denotes ɛy globin
T4198 0-71 Gene_expression denotes In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands true
R2978 T4050 T4198 themeOf "mice, Sox6","In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3917 150-151 . denotes .
T3916 144-150 NN denotes globin
T3915 141-143 JJ denotes ɛy
T3914 138-140 IN denotes of
T3913 130-137 NN denotes pattern
T3912 119-129 NN denotes expression
T3911 110-118 JJ denotes opposite
T3910 106-109 DT denotes the
T3909 104-105 , denotes ,
T3908 99-104 NN denotes liver
T3907 93-98 JJ denotes fetal
T3906 90-92 IN denotes in
T3905 80-89 VBN denotes expressed
T3904 77-79 VBZ denotes is
T3903 73-76 CC denotes but
T3902 71-72 , denotes ,
T3901 64-71 NNS denotes islands
T3900 58-63 NN denotes blood
T3899 54-57 NN denotes sac
T3898 49-53 NN denotes yolk
T3897 46-48 IN denotes in
T3896 36-45 VBN denotes expressed
T3895 32-35 RB denotes not
T3894 29-31 VBZ denotes is
T3893 24-28 NNP denotes Sox6
T3892 22-23 , denotes ,
T3891 18-22 NNS denotes mice
T3890 16-17 -RRB- denotes )
T3889 14-16 NNP denotes WT
T3888 13-14 -LRB- denotes (
T3887 3-12 JJ denotes wild-type
T3886 0-2 IN denotes In
R2845 T3886 T3896 prep In,expressed
R2847 T3887 T3891 nmod wild-type,mice
R2848 T3888 T3889 punct (,WT
R2849 T3889 T3887 appos WT,wild-type
R2851 T3890 T3889 punct ),WT
R2852 T3891 T3886 pobj mice,In
R2853 T3892 T3896 punct ",",expressed
R2855 T3893 T3896 nsubjpass Sox6,expressed
R2856 T3894 T3896 auxpass is,expressed
R2857 T3895 T3896 neg not,expressed
R2860 T3896 T3896 ROOT expressed,expressed
R2862 T3897 T3896 prep in,expressed
R2863 T3898 T3901 compound yolk,islands
R2866 T3899 T3901 compound sac,islands
R2867 T3900 T3901 compound blood,islands
R2869 T3901 T3897 pobj islands,in
R2870 T3902 T3896 punct ",",expressed
R2871 T3903 T3896 cc but,expressed
R2872 T3904 T3905 auxpass is,expressed
R2873 T3905 T3896 conj expressed,expressed
R2874 T3906 T3905 prep in,expressed
R2876 T3907 T3908 amod fetal,liver
R2877 T3908 T3906 pobj liver,in
R2879 T3909 T3905 punct ",",expressed
R2880 T3910 T3913 det the,pattern
R2882 T3911 T3913 amod opposite,pattern
R2883 T3912 T3913 compound expression,pattern
R2884 T3913 T3905 conj pattern,expressed
R2886 T3914 T3913 prep of,pattern
R2887 T3915 T3916 amod ɛy,globin
R2889 T3916 T3914 pobj globin,of
R2890 T3917 T3896 punct .,expressed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1583 119-129 Gene_expression denotes expression
T1582 80-89 Gene_expression denotes expressed
T1581 80-89 Gene_expression denotes expressed
T1580 36-45 Gene_expression denotes expressed
T1579 141-150 Protein denotes ɛy globin
T1578 24-28 Protein denotes Sox6
R795 T1578 T1580 themeOf Sox6,expressed
R796 T1578 T1581 themeOf Sox6,expressed
R797 T1579 T1582 themeOf ɛy globin,expressed
R798 T1579 T1583 themeOf ɛy globin,expression

testone

Id Subject Object Predicate Lexical cue
T1063 119-129 Gene_expression denotes expression
T1062 80-89 Gene_expression denotes expressed
T1061 36-45 Gene_expression denotes expressed
T1028 141-150 Protein denotes ɛy globin
T1027 24-28 Protein denotes Sox6
R626 T1027 T1062 themeOf Sox6,expressed
R627 T1027 T1063 themeOf Sox6,expression
R628 T1027 T1061 themeOf Sox6,expressed
R629 T1028 T1063 themeOf ɛy globin,expression

test3

Id Subject Object Predicate Lexical cue
T1116 141-150 Protein denotes ɛy globin
T1115 24-28 Protein denotes Sox6
T1191 141-150 Protein denotes ɛy globin
T1190 24-28 Protein denotes Sox6