PMC:1359074 / 8160-8311
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1465","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T1464","span":{"begin":24,"end":28},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T1275","span":{"begin":144,"end":150},"obj":"http://purl.obolibrary.org/obo/GO_0005344"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T1481","span":{"begin":144,"end":150},"obj":"http://purl.obolibrary.org/obo/GO_0005344"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T1497","span":{"begin":49,"end":53},"obj":"http://purl.obolibrary.org/obo/GO_0060417"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
sentences
{"project":"sentences","denotations":[{"id":"T1233","span":{"begin":0,"end":151},"obj":"Sentence"},{"id":"T53","span":{"begin":0,"end":151},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
simple1
{"project":"simple1","denotations":[{"id":"T1692","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T1691","span":{"begin":24,"end":28},"obj":"Protein"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T4297","span":{"begin":119,"end":129},"obj":"Gene_expression"},{"id":"T4296","span":{"begin":36,"end":45},"obj":"Gene_expression"},{"id":"T4295","span":{"begin":80,"end":89},"obj":"Gene_expression"},{"id":"T4270","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T4269","span":{"begin":24,"end":28},"obj":"Protein"}],"relations":[{"id":"R3052","pred":"themeOf","subj":"T4269","obj":"T4296"},{"id":"R3053","pred":"themeOf","subj":"T4269","obj":"T4295"},{"id":"R3054","pred":"themeOf","subj":"T4270","obj":"T4295"},{"id":"R3055","pred":"themeOf","subj":"T4270","obj":"T4297"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T2760","span":{"begin":119,"end":129},"obj":"Gene_expression"},{"id":"T2759","span":{"begin":80,"end":89},"obj":"Gene_expression"},{"id":"T2758","span":{"begin":36,"end":45},"obj":"Gene_expression"},{"id":"T2734","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T2733","span":{"begin":24,"end":28},"obj":"Protein"}],"relations":[{"id":"R1842","pred":"themeOf","subj":"T2733","obj":"T2758"},{"id":"R1843","pred":"themeOf","subj":"T2733","obj":"T2759"},{"id":"R1845","pred":"themeOf","subj":"T2734","obj":"T2760"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T2843","span":{"begin":119,"end":129},"obj":"Gene_expression"},{"id":"T2842","span":{"begin":80,"end":89},"obj":"Gene_expression"},{"id":"T2841","span":{"begin":36,"end":45},"obj":"Gene_expression"},{"id":"T2812","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T2811","span":{"begin":24,"end":28},"obj":"Protein"}],"relations":[{"id":"R1876","pred":"themeOf","subj":"T2811","obj":"T2841"},{"id":"R1877","pred":"themeOf","subj":"T2811","obj":"T2842"},{"id":"R1879","pred":"themeOf","subj":"T2812","obj":"T2843"},{"id":"R1880","pred":"themeOf","subj":"T2812","obj":"T2842"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T4099","span":{"begin":49,"end":71},"obj":"Entity"},{"id":"T4095","span":{"begin":18,"end":22},"obj":"Protein"},{"id":"T4050","span":{"begin":18,"end":28},"obj":"Protein"},{"id":"T4046","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T4198","span":{"begin":0,"end":71},"obj":"Gene_expression"}],"relations":[{"id":"R2978","pred":"themeOf","subj":"T4050","obj":"T4198"}],"attributes":[{"id":"M5","pred":"Negation","subj":"T4198","obj":"true"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T3917","span":{"begin":150,"end":151},"obj":"."},{"id":"T3916","span":{"begin":144,"end":150},"obj":"NN"},{"id":"T3915","span":{"begin":141,"end":143},"obj":"JJ"},{"id":"T3914","span":{"begin":138,"end":140},"obj":"IN"},{"id":"T3913","span":{"begin":130,"end":137},"obj":"NN"},{"id":"T3912","span":{"begin":119,"end":129},"obj":"NN"},{"id":"T3911","span":{"begin":110,"end":118},"obj":"JJ"},{"id":"T3910","span":{"begin":106,"end":109},"obj":"DT"},{"id":"T3909","span":{"begin":104,"end":105},"obj":","},{"id":"T3908","span":{"begin":99,"end":104},"obj":"NN"},{"id":"T3907","span":{"begin":93,"end":98},"obj":"JJ"},{"id":"T3906","span":{"begin":90,"end":92},"obj":"IN"},{"id":"T3905","span":{"begin":80,"end":89},"obj":"VBN"},{"id":"T3904","span":{"begin":77,"end":79},"obj":"VBZ"},{"id":"T3903","span":{"begin":73,"end":76},"obj":"CC"},{"id":"T3902","span":{"begin":71,"end":72},"obj":","},{"id":"T3901","span":{"begin":64,"end":71},"obj":"NNS"},{"id":"T3900","span":{"begin":58,"end":63},"obj":"NN"},{"id":"T3899","span":{"begin":54,"end":57},"obj":"NN"},{"id":"T3898","span":{"begin":49,"end":53},"obj":"NN"},{"id":"T3897","span":{"begin":46,"end":48},"obj":"IN"},{"id":"T3896","span":{"begin":36,"end":45},"obj":"VBN"},{"id":"T3895","span":{"begin":32,"end":35},"obj":"RB"},{"id":"T3894","span":{"begin":29,"end":31},"obj":"VBZ"},{"id":"T3893","span":{"begin":24,"end":28},"obj":"NNP"},{"id":"T3892","span":{"begin":22,"end":23},"obj":","},{"id":"T3891","span":{"begin":18,"end":22},"obj":"NNS"},{"id":"T3890","span":{"begin":16,"end":17},"obj":"-RRB-"},{"id":"T3889","span":{"begin":14,"end":16},"obj":"NNP"},{"id":"T3888","span":{"begin":13,"end":14},"obj":"-LRB-"},{"id":"T3887","span":{"begin":3,"end":12},"obj":"JJ"},{"id":"T3886","span":{"begin":0,"end":2},"obj":"IN"}],"relations":[{"id":"R2845","pred":"prep","subj":"T3886","obj":"T3896"},{"id":"R2847","pred":"nmod","subj":"T3887","obj":"T3891"},{"id":"R2848","pred":"punct","subj":"T3888","obj":"T3889"},{"id":"R2849","pred":"appos","subj":"T3889","obj":"T3887"},{"id":"R2851","pred":"punct","subj":"T3890","obj":"T3889"},{"id":"R2852","pred":"pobj","subj":"T3891","obj":"T3886"},{"id":"R2853","pred":"punct","subj":"T3892","obj":"T3896"},{"id":"R2855","pred":"nsubjpass","subj":"T3893","obj":"T3896"},{"id":"R2856","pred":"auxpass","subj":"T3894","obj":"T3896"},{"id":"R2857","pred":"neg","subj":"T3895","obj":"T3896"},{"id":"R2860","pred":"ROOT","subj":"T3896","obj":"T3896"},{"id":"R2862","pred":"prep","subj":"T3897","obj":"T3896"},{"id":"R2863","pred":"compound","subj":"T3898","obj":"T3901"},{"id":"R2866","pred":"compound","subj":"T3899","obj":"T3901"},{"id":"R2867","pred":"compound","subj":"T3900","obj":"T3901"},{"id":"R2869","pred":"pobj","subj":"T3901","obj":"T3897"},{"id":"R2870","pred":"punct","subj":"T3902","obj":"T3896"},{"id":"R2871","pred":"cc","subj":"T3903","obj":"T3896"},{"id":"R2872","pred":"auxpass","subj":"T3904","obj":"T3905"},{"id":"R2873","pred":"conj","subj":"T3905","obj":"T3896"},{"id":"R2874","pred":"prep","subj":"T3906","obj":"T3905"},{"id":"R2876","pred":"amod","subj":"T3907","obj":"T3908"},{"id":"R2877","pred":"pobj","subj":"T3908","obj":"T3906"},{"id":"R2879","pred":"punct","subj":"T3909","obj":"T3905"},{"id":"R2880","pred":"det","subj":"T3910","obj":"T3913"},{"id":"R2882","pred":"amod","subj":"T3911","obj":"T3913"},{"id":"R2883","pred":"compound","subj":"T3912","obj":"T3913"},{"id":"R2884","pred":"conj","subj":"T3913","obj":"T3905"},{"id":"R2886","pred":"prep","subj":"T3914","obj":"T3913"},{"id":"R2887","pred":"amod","subj":"T3915","obj":"T3916"},{"id":"R2889","pred":"pobj","subj":"T3916","obj":"T3914"},{"id":"R2890","pred":"punct","subj":"T3917","obj":"T3896"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T1583","span":{"begin":119,"end":129},"obj":"Gene_expression"},{"id":"T1582","span":{"begin":80,"end":89},"obj":"Gene_expression"},{"id":"T1581","span":{"begin":80,"end":89},"obj":"Gene_expression"},{"id":"T1580","span":{"begin":36,"end":45},"obj":"Gene_expression"},{"id":"T1579","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T1578","span":{"begin":24,"end":28},"obj":"Protein"}],"relations":[{"id":"R795","pred":"themeOf","subj":"T1578","obj":"T1580"},{"id":"R796","pred":"themeOf","subj":"T1578","obj":"T1581"},{"id":"R797","pred":"themeOf","subj":"T1579","obj":"T1582"},{"id":"R798","pred":"themeOf","subj":"T1579","obj":"T1583"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
testone
{"project":"testone","denotations":[{"id":"T1063","span":{"begin":119,"end":129},"obj":"Gene_expression"},{"id":"T1062","span":{"begin":80,"end":89},"obj":"Gene_expression"},{"id":"T1061","span":{"begin":36,"end":45},"obj":"Gene_expression"},{"id":"T1028","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T1027","span":{"begin":24,"end":28},"obj":"Protein"}],"relations":[{"id":"R626","pred":"themeOf","subj":"T1027","obj":"T1062"},{"id":"R627","pred":"themeOf","subj":"T1027","obj":"T1063"},{"id":"R628","pred":"themeOf","subj":"T1027","obj":"T1061"},{"id":"R629","pred":"themeOf","subj":"T1028","obj":"T1063"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}
test3
{"project":"test3","denotations":[{"id":"T1116","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T1115","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T1191","span":{"begin":141,"end":150},"obj":"Protein"},{"id":"T1190","span":{"begin":24,"end":28},"obj":"Protein"}],"text":"In wild-type (WT) mice, Sox6 is not expressed in yolk sac blood islands, but is expressed in fetal liver, the opposite expression pattern of ɛy globin."}