PMC:1359074 / 6578-7330 JSONTXT

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    2_test

    {"project":"2_test","denotations":[{"id":"16462943-15730849-85760979","span":{"begin":109,"end":111},"obj":"15730849"},{"id":"16462943-15730849-85760980","span":{"begin":402,"end":404},"obj":"15730849"},{"id":"16462943-15730849-85760981","span":{"begin":616,"end":618},"obj":"15730849"},{"id":"T66161","span":{"begin":109,"end":111},"obj":"15730849"},{"id":"T44001","span":{"begin":402,"end":404},"obj":"15730849"},{"id":"T9633","span":{"begin":616,"end":618},"obj":"15730849"}],"text":"All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins."}

    pmc-enju-pas

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the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1456","span":{"begin":664,"end":665},"obj":"Protein"},{"id":"T1455","span":{"begin":603,"end":604},"obj":"Protein"},{"id":"T1454","span":{"begin":485,"end":489},"obj":"Protein"},{"id":"T1453","span":{"begin":472,"end":479},"obj":"Protein"},{"id":"T1452","span":{"begin":466,"end":470},"obj":"Protein"},{"id":"T1451","span":{"begin":458,"end":464},"obj":"Protein"},{"id":"T1450","span":{"begin":385,"end":386},"obj":"Protein"},{"id":"T1449","span":{"begin":76,"end":77},"obj":"Protein"},{"id":"T1448","span":{"begin":47,"end":55},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1270","span":{"begin":49,"end":55},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T1241","span":{"begin":427,"end":440},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T1476","span":{"begin":49,"end":55},"obj":"http://purl.obolibrary.org/obo/GO_0005344"}],"text":"All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins."}

    GO-CC

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    sentences

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    BioNLP16_Messiy

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    bionlp-st-ge-2016-test-ihmc

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    bionlp-st-ge-2016-spacy-parsed

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    bionlp-st-ge-2016-test-tees

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    test3

    {"project":"test3","denotations":[{"id":"T1168","span":{"begin":76,"end":77},"obj":"Protein"},{"id":"T1167","span":{"begin":47,"end":55},"obj":"Protein"},{"id":"T1166","span":{"begin":33,"end":42},"obj":"Negative_regulation"},{"id":"T1107","span":{"begin":664,"end":665},"obj":"Protein"},{"id":"T1106","span":{"begin":603,"end":604},"obj":"Protein"},{"id":"T1105","span":{"begin":485,"end":489},"obj":"Protein"},{"id":"T1104","span":{"begin":472,"end":479},"obj":"Protein"},{"id":"T1103","span":{"begin":466,"end":470},"obj":"Protein"},{"id":"T1102","span":{"begin":458,"end":464},"obj":"Protein"},{"id":"T1101","span":{"begin":385,"end":386},"obj":"Protein"},{"id":"T1100","span":{"begin":76,"end":77},"obj":"Protein"},{"id":"T1099","span":{"begin":47,"end":55},"obj":"Protein"},{"id":"T1179","span":{"begin":664,"end":665},"obj":"Protein"},{"id":"T1178","span":{"begin":647,"end":656},"obj":"Negative_regulation"},{"id":"T1177","span":{"begin":605,"end":614},"obj":"Negative_regulation"},{"id":"T1176","span":{"begin":603,"end":604},"obj":"Protein"},{"id":"T1175","span":{"begin":594,"end":602},"obj":"Regulation"},{"id":"T1174","span":{"begin":533,"end":537},"obj":"Binding"},{"id":"T1173","span":{"begin":485,"end":489},"obj":"Protein"},{"id":"T1172","span":{"begin":472,"end":479},"obj":"Protein"},{"id":"T1171","span":{"begin":466,"end":470},"obj":"Protein"},{"id":"T1170","span":{"begin":458,"end":464},"obj":"Protein"},{"id":"T1169","span":{"begin":385,"end":386},"obj":"Protein"}],"relations":[{"id":"R662","pred":"themeOf","subj":"T1173","obj":"T1174"},{"id":"R663","pred":"causeOf","subj":"T1173","obj":"T1175"},{"id":"R664","pred":"causeOf","subj":"T1174","obj":"T1175"},{"id":"R665","pred":"themeOf","subj":"T1176","obj":"T1177"},{"id":"R666","pred":"themeOf","subj":"T1177","obj":"T1175"},{"id":"R667","pred":"themeOf","subj":"T1179","obj":"T1178"},{"id":"R656","pred":"themeOf","subj":"T1167","obj":"T1166"},{"id":"R657","pred":"themeOf","subj":"T1168","obj":"T1166"},{"id":"R658","pred":"themeOf","subj":"T1170","obj":"T1174"},{"id":"R659","pred":"themeOf","subj":"T1171","obj":"T1174"},{"id":"R660","pred":"themeOf","subj":"T1172","obj":"T1174"},{"id":"R661","pred":"causeOf","subj":"T1172","obj":"T1175"}],"text":"All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins."}