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PMC:1359074 / 6578-7330 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-15730849-85760979 109-111 15730849 denotes 27
16462943-15730849-85760980 402-404 15730849 denotes 27
16462943-15730849-85760981 616-618 15730849 denotes 27
T66161 109-111 15730849 denotes 27
T44001 402-404 15730849 denotes 27
T9633 616-618 15730849 denotes 27

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2470 657-659 IN denotes of
T2469 647-656 NN denotes silencing
T2468 643-646 DT denotes the
T2467 638-642 IN denotes that
T2466 630-637 VB denotes appears
T2465 627-629 PRP denotes it
T2464 625-626 -COMMA- denotes ,
T2463 621-625 RB denotes Thus
T2462 618-619 -RRB- denotes ]
T2461 616-618 CD denotes 27
T2460 615-616 -LRB- denotes [
T2459 605-614 VB denotes silencing
T2458 603-604 RB denotes ɛ
T2457 594-602 VB denotes regulate
T2456 591-593 TO denotes to
T2455 589-590 -RRB- denotes )
T2454 580-589 NN denotes complexes
T2453 572-579 NN denotes protein
T2452 569-571 IN denotes of
T2451 564-568 NN denotes part
T2450 561-563 IN denotes as
T2449 560-561 -LRB- denotes (
T2448 551-559 NN denotes elements
T2447 547-550 NN denotes DNA
T2446 541-546 DT denotes these
T2445 538-540 TO denotes to
T2444 533-537 VB denotes bind
T2443 524-532 RB denotes directly
T2442 521-523 TO denotes to
T2441 515-520 VB denotes shown
T2440 511-514 CC denotes and
T2439 500-510 VB denotes identified
T2438 495-499 VB denotes been
T2437 490-494 VB denotes have
T2436 485-489 NNP denotes DRED
T2435 481-484 CC denotes and
T2434 479-480 -COMMA- denotes ,
T2433 472-479 NN denotes COUP-TF
T2432 470-471 -COMMA- denotes ,
T2431 466-470 NN denotes YY-1
T2430 464-465 -COMMA- denotes ,
T2429 458-464 NN denotes GATA-1
T2428 455-457 IN denotes as
T2427 450-454 JJ denotes such
T2426 448-449 -COMMA- denotes ,
T2425 441-448 NN denotes factors
T2424 427-440 NN denotes transcription
T2423 413-426 JJ denotes corresponding
T2422 407-412 PRP-DOLLAR- denotes Their
T2421 404-405 -RRB- denotes ]
T2420 402-404 CD denotes 27
T2419 401-402 -LRB- denotes [
T2418 392-400 NN denotes promoter
T2417 387-391 NN denotes gene
T2416 385-386 NN denotes ɛ
T2415 378-384 JJ denotes distal
T2414 374-377 DT denotes the
T2413 370-373 CC denotes and
T2412 361-369 JJ denotes proximal
T2411 357-360 DT denotes the
T2410 352-356 CC denotes both
T2409 349-351 IN denotes in
T2408 338-348 VB denotes identified
T2407 327-337 RB denotes previously
T2406 322-326 VB denotes been
T2405 317-321 VB denotes have
T2404 309-316 NN denotes process
T2403 299-308 NN denotes silencing
T2402 295-298 DT denotes the
T2401 292-294 TO denotes to
T2400 282-291 JJ denotes important
T2399 273-281 NN denotes elements
T2398 269-272 NN denotes DNA
T2397 260-268 JJ denotes multiple
T2396 258-259 -COMMA- denotes ,
T2395 252-258 NN denotes assays
T2394 239-251 NN denotes transfection
T2393 234-238 NN denotes cell
T2392 230-233 CC denotes and
T2391 223-229 NN denotes models
T2390 217-222 NN denotes mouse
T2389 206-216 JJ denotes transgenic
T2388 203-205 IN denotes in
T2387 194-202 NN denotes analyses
T2386 185-193 NN denotes deletion
T2385 176-184 NN denotes promoter
T2384 170-175 VB denotes Using
T2383 158-168 JJ denotes autonomous
T2382 153-157 NN denotes gene
T2381 143-152 RB denotes primarily
T2380 140-142 VB denotes is
T2379 130-139 NN denotes silencing
T2378 125-129 IN denotes that
T2377 114-124 VB denotes suggesting
T2376 112-113 -COMMA- denotes ,
T2375 111-112 -RRB- denotes ]
T2374 109-111 CD denotes 27
T2373 108-109 -LRB- denotes [
T2372 98-107 NN denotes sequences
T2371 89-97 JJ denotes adjacent
T2370 86-88 IN denotes in
T2369 83-85 CC denotes or
T2368 78-82 NN denotes gene
T2367 76-77 NN denotes ɛ
T2366 72-75 DT denotes the
T2365 65-71 IN denotes within
T2364 61-64 VB denotes are
T2363 56-60 NN denotes gene
T2362 49-55 NN denotes globin
T2361 47-48 NN denotes ɛ
T2360 43-46 DT denotes the
T2359 33-42 VB denotes silencing
T2358 29-32 IN denotes for
T2357 17-28 JJ denotes responsible
T2356 8-16 NN denotes elements
T2355 4-7 DT denotes the
T2354 0-3 PDT denotes All
T2484 743-751 NN denotes proteins
T2483 731-742 VB denotes transacting
T2482 727-730 CC denotes and
T2481 718-726 NN denotes elements
T2480 714-717 NN denotes cis
T2479 705-713 JJ denotes multiple
T2478 702-704 IN denotes of
T2477 694-701 NN denotes network
T2476 682-693 JJ denotes complicated
T2475 680-681 DT denotes a
T2474 671-679 VB denotes involves
T2473 666-670 NN denotes gene
T2472 664-665 NN denotes ɛ
T2471 660-663 DT denotes the
R1433 T2356 T2354 arg1Of elements,All
R1434 T2356 T2355 arg1Of elements,the
R1435 T2356 T2357 arg1Of elements,responsible
R1436 T2356 T2364 arg1Of elements,are
R1437 T2356 T2365 arg1Of elements,within
R1438 T2356 T2370 arg1Of elements,in
R1439 T2357 T2358 arg1Of responsible,for
R1441 T2359 T2358 arg2Of silencing,for
R1445 T2363 T2359 arg2Of gene,silencing
R1446 T2363 T2360 arg1Of gene,the
R1447 T2363 T2361 arg1Of gene,ɛ
R1448 T2363 T2362 arg1Of gene,globin
R1449 T2364 T2376 arg1Of are,","
R1450 T2364 T2377 modOf are,suggesting
R1451 T2365 T2369 arg1Of within,or
R1455 T2368 T2365 arg2Of gene,within
R1456 T2368 T2366 arg1Of gene,the
R1457 T2368 T2367 arg1Of gene,ɛ
R1458 T2369 T2364 arg2Of or,are
R1459 T2370 T2369 arg2Of in,or
R1461 T2372 T2370 arg2Of sequences,in
R1462 T2372 T2371 arg1Of sequences,adjacent
R1463 T2372 T2373 arg1Of sequences,[
R1465 T2374 T2373 arg2Of 27,[
R1466 T2375 T2373 arg3Of ],[
R1470 T2379 T2380 arg1Of silencing,is
R1471 T2379 T2383 arg1Of silencing,autonomous
R1472 T2380 T2377 arg2Of is,suggesting
R1473 T2380 T2378 arg1Of is,that
R1474 T2380 T2381 arg1Of is,primarily
R1476 T2383 T2380 arg2Of autonomous,is
R1478 T2383 T2382 arg1Of autonomous,gene
R1482 T2387 T2384 arg2Of analyses,Using
R1483 T2387 T2385 arg1Of analyses,promoter
R1484 T2387 T2386 arg1Of analyses,deletion
R1485 T2387 T2388 arg1Of analyses,in
R1486 T2391 T2389 arg1Of models,transgenic
R1487 T2391 T2390 arg1Of models,mouse
R1488 T2391 T2392 arg1Of models,and
R1489 T2392 T2388 arg2Of and,in
R1491 T2395 T2392 arg2Of assays,and
R1492 T2395 T2393 arg1Of assays,cell
R1493 T2395 T2394 arg1Of assays,transfection
R1497 T2399 T2384 arg1Of elements,Using
R1498 T2399 T2397 arg1Of elements,multiple
R1499 T2399 T2398 arg1Of elements,DNA
R1500 T2399 T2400 arg1Of elements,important
R1501 T2399 T2405 arg1Of elements,have
R1502 T2399 T2406 arg1Of elements,been
R1503 T2399 T2408 arg2Of elements,identified
R1504 T2400 T2401 arg1Of important,to
R1506 T2404 T2401 arg2Of process,to
R1507 T2404 T2402 arg1Of process,the
R1508 T2404 T2403 arg1Of process,silencing
R1509 T2408 T2384 modOf identified,Using
R1510 T2408 T2396 arg1Of identified,","
R1511 T2408 T2405 arg2Of identified,have
R1512 T2408 T2406 arg2Of identified,been
R1513 T2408 T2407 arg1Of identified,previously
R1514 T2408 T2409 arg1Of identified,in
R1515 T2408 T2419 arg1Of identified,[
R1516 T2412 T2413 arg1Of proximal,and
R1520 T2415 T2413 arg2Of distal,and
R1521 T2415 T2414 arg1Of distal,the
R1523 T2418 T2409 arg2Of promoter,in
R1524 T2418 T2410 arg1Of promoter,both
R1525 T2418 T2411 arg1Of promoter,the
R1526 T2418 T2412 arg1Of promoter,proximal
R1527 T2418 T2415 arg1Of promoter,distal
R1528 T2418 T2416 arg1Of promoter,ɛ
R1529 T2418 T2417 arg1Of promoter,gene
R1530 T2420 T2419 arg2Of 27,[
R1532 T2421 T2419 arg3Of ],[
R1534 T2425 T2422 arg1Of factors,Their
R1535 T2425 T2423 arg1Of factors,corresponding
R1536 T2425 T2424 arg1Of factors,transcription
R1537 T2425 T2426 arg1Of factors,","
R1538 T2425 T2428 arg1Of factors,as
R1540 T2425 T2437 arg1Of factors,have
R1541 T2425 T2438 arg1Of factors,been
R1542 T2425 T2439 arg2Of factors,identified
R1543 T2425 T2441 arg2Of factors,shown
R1544 T2425 T2444 arg1Of factors,bind
R1545 T2425 T2457 arg1Of factors,regulate
R1548 T2428 T2427 arg1Of as,such
R1550 T2429 T2430 arg1Of GATA-1,","
R1551 T2430 T2432 arg1Of ",",","
R1552 T2431 T2430 arg2Of YY-1,","
R1553 T2432 T2435 arg1Of ",",and
R1555 T2433 T2432 arg2Of COUP-TF,","
R1556 T2435 T2428 arg2Of and,as
R1557 T2435 T2434 arg1Of and,","
R1558 T2436 T2435 arg2Of DRED,and
R1560 T2439 T2440 arg1Of identified,and
R1561 T2440 T2437 arg2Of and,have
R1562 T2440 T2438 arg2Of and,been
R1563 T2441 T2440 arg2Of shown,and
R1564 T2444 T2441 arg3Of bind,shown
R1565 T2444 T2442 arg1Of bind,to
R1566 T2444 T2443 arg1Of bind,directly
R1567 T2444 T2445 arg1Of bind,to
R1568 T2444 T2449 arg1Of bind,(
R1569 T2444 T2456 modOf bind,to
R1570 T2444 T2459 modOf bind,silencing
R1571 T2444 T2460 arg1Of bind,[
R1573 T2448 T2445 arg2Of elements,to
R1574 T2448 T2446 arg1Of elements,these
R1575 T2448 T2447 arg1Of elements,DNA
R1577 T2450 T2449 arg2Of as,(
R1579 T2451 T2450 arg2Of part,as
R1580 T2451 T2452 arg1Of part,of
R1583 T2454 T2452 arg2Of complexes,of
R1584 T2454 T2453 arg1Of complexes,protein
R1585 T2455 T2449 arg3Of ),(
R1586 T2457 T2456 arg1Of regulate,to
R1587 T2457 T2458 arg1Of regulate,ɛ
R1590 T2461 T2460 arg2Of 27,[
R1591 T2462 T2460 arg3Of ],[
R1598 T2465 T2466 arg1Of it,appears
R1600 T2466 T2463 arg1Of appears,Thus
R1601 T2466 T2464 arg1Of appears,","
R1602 T2469 T2468 arg1Of silencing,the
R1603 T2469 T2470 arg1Of silencing,of
R1604 T2469 T2474 arg1Of silencing,involves
R1605 T2473 T2470 arg2Of gene,of
R1606 T2473 T2471 arg1Of gene,the
R1607 T2473 T2472 arg1Of gene,ɛ
R1608 T2474 T2466 arg2Of involves,appears
R1609 T2474 T2467 arg1Of involves,that
R1610 T2477 T2474 arg2Of network,involves
R1611 T2477 T2475 arg1Of network,a
R1612 T2477 T2476 arg1Of network,complicated
R1613 T2477 T2478 arg1Of network,of
R1617 T2481 T2479 arg1Of elements,multiple
R1618 T2481 T2480 arg1Of elements,cis
R1619 T2481 T2482 arg1Of elements,and
R1621 T2482 T2478 arg2Of and,of
R1622 T2484 T2482 arg2Of proteins,and
R1623 T2484 T2483 arg1Of proteins,transacting

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1456 664-665 Protein denotes ɛ
T1455 603-604 Protein denotes ɛ
T1454 485-489 Protein denotes DRED
T1453 472-479 Protein denotes COUP-TF
T1452 466-470 Protein denotes YY-1
T1451 458-464 Protein denotes GATA-1
T1450 385-386 Protein denotes ɛ
T1449 76-77 Protein denotes ɛ
T1448 47-55 Protein denotes ɛ globin

GO-BP

Id Subject Object Predicate Lexical cue
T1270 49-55 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T1241 427-440 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T1476 49-55 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T1498 572-589 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T1492 234-238 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1226 621-752 Sentence denotes Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins.
T1225 407-620 Sentence denotes Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27].
T1224 170-406 Sentence denotes Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27].
T1223 0-169 Sentence denotes All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous.
T43 0-169 Sentence denotes All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous.
T44 170-406 Sentence denotes Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27].
T45 407-620 Sentence denotes Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27].
T46 621-752 Sentence denotes Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins.

simple1

Id Subject Object Predicate Lexical cue
T1683 664-665 Protein denotes ɛ
T1682 603-604 Protein denotes ɛ
T1681 485-489 Protein denotes DRED
T1680 472-479 Protein denotes COUP-TF
T1679 466-470 Protein denotes YY-1
T1678 458-464 Protein denotes GATA-1
T1677 385-386 Protein denotes ɛ
T1676 76-77 Protein denotes ɛ
T1675 47-55 Protein denotes ɛ globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4291 647-656 Negative_regulation denotes silencing
T4290 605-614 Negative_regulation denotes silencing
T4289 533-537 Binding denotes bind
T4288 594-602 Regulation denotes regulate
T4287 33-42 Negative_regulation denotes silencing
T4261 664-665 Protein denotes ɛ
T4260 603-604 Protein denotes ɛ
T4259 485-489 Protein denotes DRED
T4258 472-479 Protein denotes COUP-TF
T4257 466-470 Protein denotes YY-1
T4256 458-464 Protein denotes GATA-1
T4255 385-386 Protein denotes ɛ
T4254 76-77 Protein denotes ɛ
T4253 47-55 Protein denotes ɛ globin
R3043 T4253 T4287 themeOf ɛ globin,silencing
R3044 T4258 T4289 themeOf COUP-TF,bind
R3045 T4260 T4288 themeOf ɛ,regulate
R3046 T4260 T4290 themeOf ɛ,silencing
R3047 T4261 T4291 themeOf ɛ,silencing

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2753 647-656 Negative_regulation denotes silencing
T2752 605-614 Negative_regulation denotes silencing
T2751 594-602 Regulation denotes regulate
T2750 533-537 Binding denotes bind
T2749 33-42 Negative_regulation denotes silencing
T2725 664-665 Protein denotes ɛ
T2724 603-604 Protein denotes ɛ
T2723 485-489 Protein denotes DRED
T2722 472-479 Protein denotes COUP-TF
T2721 466-470 Protein denotes YY-1
T2720 458-464 Protein denotes GATA-1
T2719 385-386 Protein denotes ɛ
T2718 76-77 Protein denotes ɛ
T2717 47-55 Protein denotes ɛ globin
R1816 T2717 T2749 themeOf ɛ globin,silencing
R1820 T2720 T2750 themeOf GATA-1,bind
R1822 T2724 T2752 themeOf ɛ,silencing
R1826 T2725 T2753 themeOf ɛ,silencing
R1859 T2752 T2751 themeOf silencing,regulate

DLUT931

Id Subject Object Predicate Lexical cue
T2833 647-656 Negative_regulation denotes silencing
T2832 594-602 Regulation denotes regulate
T2831 605-614 Negative_regulation denotes silencing
T2830 33-42 Negative_regulation denotes silencing
T2803 664-665 Protein denotes ɛ
T2802 603-604 Protein denotes ɛ
T2801 485-489 Protein denotes DRED
T2800 472-479 Protein denotes COUP-TF
T2799 466-470 Protein denotes YY-1
T2798 458-464 Protein denotes GATA-1
T2797 385-386 Protein denotes ɛ
T2796 76-77 Protein denotes ɛ
T2795 47-55 Protein denotes ɛ globin
R1878 T2795 T2830 themeOf ɛ globin,silencing
R1882 T2800 T2832 causeOf COUP-TF,regulate
R1883 T2802 T2831 themeOf ɛ,silencing
R1884 T2803 T2833 themeOf ɛ,silencing
R1886 T2831 T2832 themeOf silencing,regulate

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4107 43-60 Protein denotes the ɛ globin gene
T4096 743-751 Protein denotes proteins
T4089 714-717 Protein denotes cis
T4077 385-386 Protein denotes ɛ
T4054 269-272 Entity denotes DNA
T4049 603-604 Protein denotes ɛ
T4035 374-405 Entity denotes the distal ɛ gene promoter [27]
T4033 72-82 Protein denotes the ɛ gene
T4217 594-604 Regulation denotes regulate ɛ
T4193 29-60 Negative_regulation denotes for silencing the ɛ globin gene
T4192 643-670 Negative_regulation denotes the silencing of the ɛ gene
T4186 485-489 Protein denotes DRED
T4181 458-464 Protein denotes GATA-1
T4142 76-77 Protein denotes ɛ
T4140 176-184 Entity denotes promoter
T4136 466-470 Protein denotes YY-1
T4134 153-168 Protein denotes gene autonomous
T4128 43-60 Protein denotes the ɛ globin gene
T4125 657-670 Protein denotes of the ɛ gene
T4124 472-479 Protein denotes COUP-TF
T4158 569-589 Entity denotes of protein complexes
T4156 374-405 Protein denotes the distal ɛ gene promoter [27]
T4174 664-665 Protein denotes ɛ
T4167 547-550 Entity denotes DNA
T4164 47-48 Protein denotes ɛ
T4161 234-238 Entity denotes cell
R2966 T4049 T4217 themeOf ɛ,regulate ɛ
R2962 T4035 T4077 partOf the distal ɛ gene promoter [27],ɛ
R3004 T4125 T4192 themeOf of the ɛ gene,the silencing of the ɛ gene
R3006 T4128 T4193 themeOf the ɛ globin gene,for silencing the ɛ globin gene

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3689 521-523 TO denotes to
T3688 515-520 VBN denotes shown
T3687 511-514 CC denotes and
T3686 500-510 VBN denotes identified
T3685 495-499 VBN denotes been
T3684 490-494 VBP denotes have
T3683 485-489 NNP denotes DRED
T3682 481-484 CC denotes and
T3681 479-480 , denotes ,
T3680 472-479 NNP denotes COUP-TF
T3679 470-471 , denotes ,
T3678 466-470 NNP denotes YY-1
T3677 464-465 , denotes ,
T3676 458-464 NNP denotes GATA-1
T3675 455-457 IN denotes as
T3674 450-454 JJ denotes such
T3673 448-449 , denotes ,
T3672 441-448 NNS denotes factors
T3671 427-440 NN denotes transcription
T3670 413-426 JJ denotes corresponding
T3669 407-412 PRP$ denotes Their
T3668 405-406 . denotes .
T3667 404-405 NNP denotes ]
T3666 402-404 CD denotes 27
T3665 401-402 NNP denotes [
T3664 392-400 NN denotes promoter
T3663 387-391 NN denotes gene
T3662 385-386 NN denotes ɛ
T3661 378-384 JJ denotes distal
T3660 374-377 DT denotes the
T3659 370-373 CC denotes and
T3658 361-369 NN denotes proximal
T3657 357-360 DT denotes the
T3656 352-356 DT denotes both
T3655 349-351 IN denotes in
T3654 338-348 VBN denotes identified
T3653 327-337 RB denotes previously
T3652 322-326 VBN denotes been
T3651 317-321 VBP denotes have
T3650 309-316 NN denotes process
T3649 299-308 VBG denotes silencing
T3648 295-298 DT denotes the
T3647 292-294 TO denotes to
T3646 282-291 JJ denotes important
T3645 273-281 NNS denotes elements
T3644 269-272 NNP denotes DNA
T3643 260-268 JJ denotes multiple
T3642 258-259 , denotes ,
T3641 252-258 NNS denotes assays
T3640 239-251 NN denotes transfection
T3639 234-238 NN denotes cell
T3638 230-233 CC denotes and
T3637 223-229 NNS denotes models
T3636 217-222 NN denotes mouse
T3635 206-216 JJ denotes transgenic
T3634 203-205 IN denotes in
T3633 194-202 NNS denotes analyses
T3632 185-193 NN denotes deletion
T3631 176-184 NN denotes promoter
T3630 170-175 VBG denotes Using
T3629 168-169 . denotes .
T3628 158-168 JJ denotes autonomous
T3627 153-157 NN denotes gene
T3626 143-152 RB denotes primarily
T3625 140-142 VBZ denotes is
T3624 130-139 VBG denotes silencing
T3623 125-129 IN denotes that
T3622 114-124 VBG denotes suggesting
T3621 112-113 , denotes ,
T3620 111-112 NNP denotes ]
T3619 109-111 CD denotes 27
T3618 108-109 NNP denotes [
T3617 98-107 NNS denotes sequences
T3616 89-97 JJ denotes adjacent
T3615 86-88 IN denotes in
T3614 83-85 CC denotes or
T3613 78-82 NN denotes gene
T3612 76-77 NN denotes ɛ
T3611 72-75 DT denotes the
T3610 65-71 IN denotes within
T3609 61-64 VBP denotes are
T3608 56-60 NN denotes gene
T3607 49-55 NN denotes globin
T3606 47-48 NN denotes ɛ
T3605 43-46 DT denotes the
T3604 33-42 VBG denotes silencing
T3603 29-32 IN denotes for
T3602 17-28 JJ denotes responsible
T3601 8-16 NNS denotes elements
T3600 4-7 DT denotes the
T3599 0-3 PDT denotes All
T3733 751-752 . denotes .
T3732 743-751 NNS denotes proteins
T3731 731-742 VBG denotes transacting
T3730 727-730 CC denotes and
T3729 718-726 NNS denotes elements
T3728 714-717 NN denotes cis
T3727 705-713 JJ denotes multiple
T3726 702-704 IN denotes of
T3725 694-701 NN denotes network
T3724 682-693 JJ denotes complicated
T3723 680-681 DT denotes a
T3722 671-679 VBZ denotes involves
T3721 666-670 NN denotes gene
T3720 664-665 NN denotes ɛ
T3719 660-663 DT denotes the
T3718 657-659 IN denotes of
T3717 647-656 NN denotes silencing
T3716 643-646 DT denotes the
T3715 638-642 IN denotes that
T3714 630-637 VBZ denotes appears
T3713 627-629 PRP denotes it
T3712 625-626 , denotes ,
T3711 621-625 RB denotes Thus
T3710 619-620 . denotes .
T3709 618-619 NNP denotes ]
T3708 616-618 CD denotes 27
T3707 615-616 NNP denotes [
T3706 605-614 VBG denotes silencing
T3705 603-604 NN denotes ɛ
T3704 594-602 VB denotes regulate
T3703 591-593 TO denotes to
T3702 589-590 -RRB- denotes )
T3701 580-589 NNS denotes complexes
T3700 572-579 NN denotes protein
T3699 569-571 IN denotes of
T3698 564-568 NN denotes part
T3697 561-563 IN denotes as
T3696 560-561 -LRB- denotes (
T3695 551-559 NNS denotes elements
T3694 547-550 NNP denotes DNA
T3693 541-546 DT denotes these
T3692 538-540 TO denotes to
T3691 533-537 NN denotes bind
T3690 524-532 RB denotes directly
R2582 T3599 T3601 predet All,elements
R2584 T3600 T3601 det the,elements
R2585 T3601 T3609 nsubj elements,are
R2587 T3602 T3601 amod responsible,elements
R2588 T3603 T3602 prep for,responsible
R2589 T3604 T3603 pcomp silencing,for
R2593 T3605 T3608 det the,gene
R2594 T3606 T3608 nmod ɛ,gene
R2596 T3607 T3608 compound globin,gene
R2597 T3608 T3604 dobj gene,silencing
R2599 T3609 T3609 ROOT are,are
R2600 T3610 T3609 prep within,are
R2601 T3611 T3613 det the,gene
R2603 T3612 T3613 compound ɛ,gene
R2604 T3613 T3610 pobj gene,within
R2605 T3614 T3610 cc or,within
R2607 T3615 T3610 conj in,within
R2608 T3616 T3617 amod adjacent,sequences
R2610 T3617 T3615 pobj sequences,in
R2611 T3618 T3620 nmod [,]
R2613 T3619 T3620 nummod 27,]
R2614 T3620 T3609 attr ],are
R2615 T3621 T3609 punct ",",are
R2617 T3622 T3609 advcl suggesting,are
R2618 T3623 T3625 mark that,is
R2619 T3624 T3625 csubj silencing,is
R2620 T3625 T3622 ccomp is,suggesting
R2621 T3626 T3627 advmod primarily,gene
R2622 T3627 T3625 attr gene,is
R2624 T3628 T3627 amod autonomous,gene
R2625 T3629 T3609 punct .,are
R2626 T3630 T3654 csubj Using,identified
R2628 T3631 T3632 compound promoter,deletion
R2629 T3632 T3633 compound deletion,analyses
R2630 T3633 T3630 dobj analyses,Using
R2632 T3634 T3633 prep in,analyses
R2633 T3635 T3637 amod transgenic,models
R2635 T3636 T3637 compound mouse,models
R2636 T3637 T3634 pobj models,in
R2637 T3638 T3637 cc and,models
R2639 T3639 T3640 compound cell,transfection
R2640 T3640 T3641 compound transfection,assays
R2641 T3641 T3637 conj assays,models
R2643 T3642 T3641 punct ",",assays
R2644 T3643 T3645 amod multiple,elements
R2646 T3644 T3645 compound DNA,elements
R2647 T3645 T3641 conj elements,assays
R2648 T3646 T3645 amod important,elements
R2650 T3647 T3646 prep to,important
R2651 T3648 T3650 det the,process
R2652 T3649 T3650 amod silencing,process
R2654 T3650 T3647 pobj process,to
R2655 T3651 T3654 aux have,identified
R2656 T3652 T3654 auxpass been,identified
R2657 T3702 T3688 punct ),shown
R2658 T3653 T3654 advmod previously,identified
R2659 T3654 T3654 ROOT identified,identified
R2660 T3655 T3654 prep in,identified
R2661 T3656 T3658 preconj both,proximal
R2662 T3703 T3704 aux to,regulate
R2663 T3657 T3658 det the,proximal
R2664 T3658 T3655 pobj proximal,in
R2665 T3659 T3658 cc and,proximal
R2666 T3704 T3688 advcl regulate,shown
R2667 T3660 T3664 det the,promoter
R2668 T3661 T3664 amod distal,promoter
R2669 T3662 T3664 compound ɛ,promoter
R2670 T3705 T3704 dobj ɛ,regulate
R2671 T3663 T3664 compound gene,promoter
R2672 T3664 T3658 conj promoter,proximal
R2673 T3665 T3667 nmod [,]
R2674 T3706 T3705 acl silencing,ɛ
R2675 T3666 T3667 nummod 27,]
R2676 T3667 T3664 appos ],promoter
R2677 T3707 T3709 nmod [,]
R2678 T3668 T3654 punct .,identified
R2679 T3669 T3672 poss Their,factors
R2680 T3670 T3672 amod corresponding,factors
R2681 T3708 T3709 nummod 27,]
R2682 T3671 T3672 compound transcription,factors
R2683 T3709 T3706 dobj ],silencing
R2684 T3672 T3686 nsubjpass factors,identified
R2685 T3673 T3672 punct ",",factors
R2686 T3674 T3675 amod such,as
R2687 T3710 T3686 punct .,identified
R2688 T3675 T3672 prep as,factors
R2689 T3676 T3675 pobj GATA-1,as
R2690 T3677 T3676 punct ",",GATA-1
R2691 T3711 T3714 advmod Thus,appears
R2692 T3678 T3676 conj YY-1,GATA-1
R2693 T3679 T3678 punct ",",YY-1
R2694 T3712 T3714 punct ",",appears
R2695 T3680 T3678 conj COUP-TF,YY-1
R2696 T3681 T3680 punct ",",COUP-TF
R2697 T3682 T3680 cc and,COUP-TF
R2698 T3713 T3714 nsubj it,appears
R2699 T3683 T3680 conj DRED,COUP-TF
R2700 T3684 T3686 aux have,identified
R2701 T3685 T3686 auxpass been,identified
R2702 T3714 T3714 ROOT appears,appears
R2703 T3686 T3686 ROOT identified,identified
R2704 T3687 T3686 cc and,identified
R2705 T3688 T3686 conj shown,identified
R2706 T3715 T3722 mark that,involves
R2707 T3689 T3691 aux to,bind
R2708 T3690 T3691 advmod directly,bind
R2709 T3691 T3688 xcomp bind,shown
R2710 T3716 T3717 det the,silencing
R2711 T3692 T3691 prep to,bind
R2712 T3693 T3695 det these,elements
R2713 T3694 T3695 compound DNA,elements
R2714 T3717 T3722 nsubj silencing,involves
R2715 T3695 T3692 pobj elements,to
R2716 T3696 T3695 punct (,elements
R2717 T3697 T3688 prep as,shown
R2718 T3698 T3697 pobj part,as
R2719 T3699 T3698 prep of,part
R2720 T3700 T3701 compound protein,complexes
R2721 T3718 T3717 prep of,silencing
R2722 T3701 T3699 pobj complexes,of
R2723 T3719 T3721 det the,gene
R2724 T3720 T3721 compound ɛ,gene
R2725 T3721 T3718 pobj gene,of
R2727 T3722 T3714 ccomp involves,appears
R2728 T3723 T3725 det a,network
R2731 T3724 T3725 amod complicated,network
R2734 T3725 T3722 dobj network,involves
R2737 T3726 T3725 prep of,network
R2741 T3727 T3729 amod multiple,elements
R2744 T3728 T3729 compound cis,elements
R2748 T3729 T3726 pobj elements,of
R2752 T3730 T3729 cc and,elements
R2755 T3731 T3732 amod transacting,proteins
R2757 T3732 T3729 conj proteins,elements
R2759 T3733 T3714 punct .,appears

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1560 533-537 Binding denotes bind
T1559 472-479 Protein denotes COUP-TF
T1558 466-470 Protein denotes YY-1
T1557 458-464 Protein denotes GATA-1
T1556 33-42 Negative_regulation denotes silencing
T1555 47-60 Protein denotes ɛ globin gene
R779 T1555 T1556 themeOf ɛ globin gene,silencing
R780 T1558 T1560 themeOf YY-1,bind

testone

Id Subject Object Predicate Lexical cue
T1053 647-656 Negative_regulation denotes silencing
T1052 605-614 Negative_regulation denotes silencing
T1051 594-602 Regulation denotes regulate
T1050 533-537 Binding denotes bind
T1049 130-139 Negative_regulation denotes silencing
T1048 33-42 Negative_regulation denotes silencing
T1019 664-665 Protein denotes ɛ
T1018 603-604 Protein denotes ɛ
T1017 485-489 Protein denotes DRED
T1016 472-479 Protein denotes COUP-TF
T1015 466-470 Protein denotes YY-1
T1014 458-464 Protein denotes GATA-1
T1013 385-386 Protein denotes ɛ
T1012 76-77 Protein denotes ɛ
T1011 47-55 Protein denotes ɛ globin
R614 T1011 T1048 themeOf ɛ globin,silencing
R615 T1014 T1050 themeOf GATA-1,bind
R616 T1015 T1050 themeOf YY-1,bind
R617 T1016 T1050 themeOf COUP-TF,bind
R618 T1017 T1050 themeOf DRED,bind
R619 T1018 T1052 themeOf ɛ,silencing
R620 T1019 T1053 themeOf ɛ,silencing
R635 T1050 T1051 causeOf bind,regulate
R636 T1052 T1051 themeOf silencing,regulate

test3

Id Subject Object Predicate Lexical cue
T1168 76-77 Protein denotes ɛ
T1167 47-55 Protein denotes ɛ globin
T1166 33-42 Negative_regulation denotes silencing
T1107 664-665 Protein denotes ɛ
T1106 603-604 Protein denotes ɛ
T1105 485-489 Protein denotes DRED
T1104 472-479 Protein denotes COUP-TF
T1103 466-470 Protein denotes YY-1
T1102 458-464 Protein denotes GATA-1
T1101 385-386 Protein denotes ɛ
T1100 76-77 Protein denotes ɛ
T1099 47-55 Protein denotes ɛ globin
T1179 664-665 Protein denotes ɛ
T1178 647-656 Negative_regulation denotes silencing
T1177 605-614 Negative_regulation denotes silencing
T1176 603-604 Protein denotes ɛ
T1175 594-602 Regulation denotes regulate
T1174 533-537 Binding denotes bind
T1173 485-489 Protein denotes DRED
T1172 472-479 Protein denotes COUP-TF
T1171 466-470 Protein denotes YY-1
T1170 458-464 Protein denotes GATA-1
T1169 385-386 Protein denotes ɛ
R662 T1173 T1174 themeOf DRED,bind
R663 T1173 T1175 causeOf DRED,regulate
R664 T1174 T1175 causeOf bind,regulate
R665 T1176 T1177 themeOf ɛ,silencing
R666 T1177 T1175 themeOf silencing,regulate
R667 T1179 T1178 themeOf ɛ,silencing
R656 T1167 T1166 themeOf ɛ globin,silencing
R657 T1168 T1166 themeOf ɛ,silencing
R658 T1170 T1174 themeOf GATA-1,bind
R659 T1171 T1174 themeOf YY-1,bind
R660 T1172 T1174 themeOf COUP-TF,bind
R661 T1172 T1175 causeOf COUP-TF,regulate