PMC:1359074 / 6578-7330
Annnotations
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
16462943-15730849-85760979 | 109-111 | 15730849 | denotes | 27 |
16462943-15730849-85760980 | 402-404 | 15730849 | denotes | 27 |
16462943-15730849-85760981 | 616-618 | 15730849 | denotes | 27 |
T66161 | 109-111 | 15730849 | denotes | 27 |
T44001 | 402-404 | 15730849 | denotes | 27 |
T9633 | 616-618 | 15730849 | denotes | 27 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2470 | 657-659 | IN | denotes | of |
T2469 | 647-656 | NN | denotes | silencing |
T2468 | 643-646 | DT | denotes | the |
T2467 | 638-642 | IN | denotes | that |
T2466 | 630-637 | VB | denotes | appears |
T2465 | 627-629 | PRP | denotes | it |
T2464 | 625-626 | -COMMA- | denotes | , |
T2463 | 621-625 | RB | denotes | Thus |
T2462 | 618-619 | -RRB- | denotes | ] |
T2461 | 616-618 | CD | denotes | 27 |
T2460 | 615-616 | -LRB- | denotes | [ |
T2459 | 605-614 | VB | denotes | silencing |
T2458 | 603-604 | RB | denotes | ɛ |
T2457 | 594-602 | VB | denotes | regulate |
T2456 | 591-593 | TO | denotes | to |
T2455 | 589-590 | -RRB- | denotes | ) |
T2454 | 580-589 | NN | denotes | complexes |
T2453 | 572-579 | NN | denotes | protein |
T2452 | 569-571 | IN | denotes | of |
T2451 | 564-568 | NN | denotes | part |
T2450 | 561-563 | IN | denotes | as |
T2449 | 560-561 | -LRB- | denotes | ( |
T2448 | 551-559 | NN | denotes | elements |
T2447 | 547-550 | NN | denotes | DNA |
T2446 | 541-546 | DT | denotes | these |
T2445 | 538-540 | TO | denotes | to |
T2444 | 533-537 | VB | denotes | bind |
T2443 | 524-532 | RB | denotes | directly |
T2442 | 521-523 | TO | denotes | to |
T2441 | 515-520 | VB | denotes | shown |
T2440 | 511-514 | CC | denotes | and |
T2439 | 500-510 | VB | denotes | identified |
T2438 | 495-499 | VB | denotes | been |
T2437 | 490-494 | VB | denotes | have |
T2436 | 485-489 | NNP | denotes | DRED |
T2435 | 481-484 | CC | denotes | and |
T2434 | 479-480 | -COMMA- | denotes | , |
T2433 | 472-479 | NN | denotes | COUP-TF |
T2432 | 470-471 | -COMMA- | denotes | , |
T2431 | 466-470 | NN | denotes | YY-1 |
T2430 | 464-465 | -COMMA- | denotes | , |
T2429 | 458-464 | NN | denotes | GATA-1 |
T2428 | 455-457 | IN | denotes | as |
T2427 | 450-454 | JJ | denotes | such |
T2426 | 448-449 | -COMMA- | denotes | , |
T2425 | 441-448 | NN | denotes | factors |
T2424 | 427-440 | NN | denotes | transcription |
T2423 | 413-426 | JJ | denotes | corresponding |
T2422 | 407-412 | PRP-DOLLAR- | denotes | Their |
T2421 | 404-405 | -RRB- | denotes | ] |
T2420 | 402-404 | CD | denotes | 27 |
T2419 | 401-402 | -LRB- | denotes | [ |
T2418 | 392-400 | NN | denotes | promoter |
T2417 | 387-391 | NN | denotes | gene |
T2416 | 385-386 | NN | denotes | ɛ |
T2415 | 378-384 | JJ | denotes | distal |
T2414 | 374-377 | DT | denotes | the |
T2413 | 370-373 | CC | denotes | and |
T2412 | 361-369 | JJ | denotes | proximal |
T2411 | 357-360 | DT | denotes | the |
T2410 | 352-356 | CC | denotes | both |
T2409 | 349-351 | IN | denotes | in |
T2408 | 338-348 | VB | denotes | identified |
T2407 | 327-337 | RB | denotes | previously |
T2406 | 322-326 | VB | denotes | been |
T2405 | 317-321 | VB | denotes | have |
T2404 | 309-316 | NN | denotes | process |
T2403 | 299-308 | NN | denotes | silencing |
T2402 | 295-298 | DT | denotes | the |
T2401 | 292-294 | TO | denotes | to |
T2400 | 282-291 | JJ | denotes | important |
T2399 | 273-281 | NN | denotes | elements |
T2398 | 269-272 | NN | denotes | DNA |
T2397 | 260-268 | JJ | denotes | multiple |
T2396 | 258-259 | -COMMA- | denotes | , |
T2395 | 252-258 | NN | denotes | assays |
T2394 | 239-251 | NN | denotes | transfection |
T2393 | 234-238 | NN | denotes | cell |
T2392 | 230-233 | CC | denotes | and |
T2391 | 223-229 | NN | denotes | models |
T2390 | 217-222 | NN | denotes | mouse |
T2389 | 206-216 | JJ | denotes | transgenic |
T2388 | 203-205 | IN | denotes | in |
T2387 | 194-202 | NN | denotes | analyses |
T2386 | 185-193 | NN | denotes | deletion |
T2385 | 176-184 | NN | denotes | promoter |
T2384 | 170-175 | VB | denotes | Using |
T2383 | 158-168 | JJ | denotes | autonomous |
T2382 | 153-157 | NN | denotes | gene |
T2381 | 143-152 | RB | denotes | primarily |
T2380 | 140-142 | VB | denotes | is |
T2379 | 130-139 | NN | denotes | silencing |
T2378 | 125-129 | IN | denotes | that |
T2377 | 114-124 | VB | denotes | suggesting |
T2376 | 112-113 | -COMMA- | denotes | , |
T2375 | 111-112 | -RRB- | denotes | ] |
T2374 | 109-111 | CD | denotes | 27 |
T2373 | 108-109 | -LRB- | denotes | [ |
T2372 | 98-107 | NN | denotes | sequences |
T2371 | 89-97 | JJ | denotes | adjacent |
T2370 | 86-88 | IN | denotes | in |
T2369 | 83-85 | CC | denotes | or |
T2368 | 78-82 | NN | denotes | gene |
T2367 | 76-77 | NN | denotes | ɛ |
T2366 | 72-75 | DT | denotes | the |
T2365 | 65-71 | IN | denotes | within |
T2364 | 61-64 | VB | denotes | are |
T2363 | 56-60 | NN | denotes | gene |
T2362 | 49-55 | NN | denotes | globin |
T2361 | 47-48 | NN | denotes | ɛ |
T2360 | 43-46 | DT | denotes | the |
T2359 | 33-42 | VB | denotes | silencing |
T2358 | 29-32 | IN | denotes | for |
T2357 | 17-28 | JJ | denotes | responsible |
T2356 | 8-16 | NN | denotes | elements |
T2355 | 4-7 | DT | denotes | the |
T2354 | 0-3 | PDT | denotes | All |
T2484 | 743-751 | NN | denotes | proteins |
T2483 | 731-742 | VB | denotes | transacting |
T2482 | 727-730 | CC | denotes | and |
T2481 | 718-726 | NN | denotes | elements |
T2480 | 714-717 | NN | denotes | cis |
T2479 | 705-713 | JJ | denotes | multiple |
T2478 | 702-704 | IN | denotes | of |
T2477 | 694-701 | NN | denotes | network |
T2476 | 682-693 | JJ | denotes | complicated |
T2475 | 680-681 | DT | denotes | a |
T2474 | 671-679 | VB | denotes | involves |
T2473 | 666-670 | NN | denotes | gene |
T2472 | 664-665 | NN | denotes | ɛ |
T2471 | 660-663 | DT | denotes | the |
R1433 | T2356 | T2354 | arg1Of | elements,All |
R1434 | T2356 | T2355 | arg1Of | elements,the |
R1435 | T2356 | T2357 | arg1Of | elements,responsible |
R1436 | T2356 | T2364 | arg1Of | elements,are |
R1437 | T2356 | T2365 | arg1Of | elements,within |
R1438 | T2356 | T2370 | arg1Of | elements,in |
R1439 | T2357 | T2358 | arg1Of | responsible,for |
R1441 | T2359 | T2358 | arg2Of | silencing,for |
R1445 | T2363 | T2359 | arg2Of | gene,silencing |
R1446 | T2363 | T2360 | arg1Of | gene,the |
R1447 | T2363 | T2361 | arg1Of | gene,ɛ |
R1448 | T2363 | T2362 | arg1Of | gene,globin |
R1449 | T2364 | T2376 | arg1Of | are,"," |
R1450 | T2364 | T2377 | modOf | are,suggesting |
R1451 | T2365 | T2369 | arg1Of | within,or |
R1455 | T2368 | T2365 | arg2Of | gene,within |
R1456 | T2368 | T2366 | arg1Of | gene,the |
R1457 | T2368 | T2367 | arg1Of | gene,ɛ |
R1458 | T2369 | T2364 | arg2Of | or,are |
R1459 | T2370 | T2369 | arg2Of | in,or |
R1461 | T2372 | T2370 | arg2Of | sequences,in |
R1462 | T2372 | T2371 | arg1Of | sequences,adjacent |
R1463 | T2372 | T2373 | arg1Of | sequences,[ |
R1465 | T2374 | T2373 | arg2Of | 27,[ |
R1466 | T2375 | T2373 | arg3Of | ],[ |
R1470 | T2379 | T2380 | arg1Of | silencing,is |
R1471 | T2379 | T2383 | arg1Of | silencing,autonomous |
R1472 | T2380 | T2377 | arg2Of | is,suggesting |
R1473 | T2380 | T2378 | arg1Of | is,that |
R1474 | T2380 | T2381 | arg1Of | is,primarily |
R1476 | T2383 | T2380 | arg2Of | autonomous,is |
R1478 | T2383 | T2382 | arg1Of | autonomous,gene |
R1482 | T2387 | T2384 | arg2Of | analyses,Using |
R1483 | T2387 | T2385 | arg1Of | analyses,promoter |
R1484 | T2387 | T2386 | arg1Of | analyses,deletion |
R1485 | T2387 | T2388 | arg1Of | analyses,in |
R1486 | T2391 | T2389 | arg1Of | models,transgenic |
R1487 | T2391 | T2390 | arg1Of | models,mouse |
R1488 | T2391 | T2392 | arg1Of | models,and |
R1489 | T2392 | T2388 | arg2Of | and,in |
R1491 | T2395 | T2392 | arg2Of | assays,and |
R1492 | T2395 | T2393 | arg1Of | assays,cell |
R1493 | T2395 | T2394 | arg1Of | assays,transfection |
R1497 | T2399 | T2384 | arg1Of | elements,Using |
R1498 | T2399 | T2397 | arg1Of | elements,multiple |
R1499 | T2399 | T2398 | arg1Of | elements,DNA |
R1500 | T2399 | T2400 | arg1Of | elements,important |
R1501 | T2399 | T2405 | arg1Of | elements,have |
R1502 | T2399 | T2406 | arg1Of | elements,been |
R1503 | T2399 | T2408 | arg2Of | elements,identified |
R1504 | T2400 | T2401 | arg1Of | important,to |
R1506 | T2404 | T2401 | arg2Of | process,to |
R1507 | T2404 | T2402 | arg1Of | process,the |
R1508 | T2404 | T2403 | arg1Of | process,silencing |
R1509 | T2408 | T2384 | modOf | identified,Using |
R1510 | T2408 | T2396 | arg1Of | identified,"," |
R1511 | T2408 | T2405 | arg2Of | identified,have |
R1512 | T2408 | T2406 | arg2Of | identified,been |
R1513 | T2408 | T2407 | arg1Of | identified,previously |
R1514 | T2408 | T2409 | arg1Of | identified,in |
R1515 | T2408 | T2419 | arg1Of | identified,[ |
R1516 | T2412 | T2413 | arg1Of | proximal,and |
R1520 | T2415 | T2413 | arg2Of | distal,and |
R1521 | T2415 | T2414 | arg1Of | distal,the |
R1523 | T2418 | T2409 | arg2Of | promoter,in |
R1524 | T2418 | T2410 | arg1Of | promoter,both |
R1525 | T2418 | T2411 | arg1Of | promoter,the |
R1526 | T2418 | T2412 | arg1Of | promoter,proximal |
R1527 | T2418 | T2415 | arg1Of | promoter,distal |
R1528 | T2418 | T2416 | arg1Of | promoter,ɛ |
R1529 | T2418 | T2417 | arg1Of | promoter,gene |
R1530 | T2420 | T2419 | arg2Of | 27,[ |
R1532 | T2421 | T2419 | arg3Of | ],[ |
R1534 | T2425 | T2422 | arg1Of | factors,Their |
R1535 | T2425 | T2423 | arg1Of | factors,corresponding |
R1536 | T2425 | T2424 | arg1Of | factors,transcription |
R1537 | T2425 | T2426 | arg1Of | factors,"," |
R1538 | T2425 | T2428 | arg1Of | factors,as |
R1540 | T2425 | T2437 | arg1Of | factors,have |
R1541 | T2425 | T2438 | arg1Of | factors,been |
R1542 | T2425 | T2439 | arg2Of | factors,identified |
R1543 | T2425 | T2441 | arg2Of | factors,shown |
R1544 | T2425 | T2444 | arg1Of | factors,bind |
R1545 | T2425 | T2457 | arg1Of | factors,regulate |
R1548 | T2428 | T2427 | arg1Of | as,such |
R1550 | T2429 | T2430 | arg1Of | GATA-1,"," |
R1551 | T2430 | T2432 | arg1Of | ",","," |
R1552 | T2431 | T2430 | arg2Of | YY-1,"," |
R1553 | T2432 | T2435 | arg1Of | ",",and |
R1555 | T2433 | T2432 | arg2Of | COUP-TF,"," |
R1556 | T2435 | T2428 | arg2Of | and,as |
R1557 | T2435 | T2434 | arg1Of | and,"," |
R1558 | T2436 | T2435 | arg2Of | DRED,and |
R1560 | T2439 | T2440 | arg1Of | identified,and |
R1561 | T2440 | T2437 | arg2Of | and,have |
R1562 | T2440 | T2438 | arg2Of | and,been |
R1563 | T2441 | T2440 | arg2Of | shown,and |
R1564 | T2444 | T2441 | arg3Of | bind,shown |
R1565 | T2444 | T2442 | arg1Of | bind,to |
R1566 | T2444 | T2443 | arg1Of | bind,directly |
R1567 | T2444 | T2445 | arg1Of | bind,to |
R1568 | T2444 | T2449 | arg1Of | bind,( |
R1569 | T2444 | T2456 | modOf | bind,to |
R1570 | T2444 | T2459 | modOf | bind,silencing |
R1571 | T2444 | T2460 | arg1Of | bind,[ |
R1573 | T2448 | T2445 | arg2Of | elements,to |
R1574 | T2448 | T2446 | arg1Of | elements,these |
R1575 | T2448 | T2447 | arg1Of | elements,DNA |
R1577 | T2450 | T2449 | arg2Of | as,( |
R1579 | T2451 | T2450 | arg2Of | part,as |
R1580 | T2451 | T2452 | arg1Of | part,of |
R1583 | T2454 | T2452 | arg2Of | complexes,of |
R1584 | T2454 | T2453 | arg1Of | complexes,protein |
R1585 | T2455 | T2449 | arg3Of | ),( |
R1586 | T2457 | T2456 | arg1Of | regulate,to |
R1587 | T2457 | T2458 | arg1Of | regulate,ɛ |
R1590 | T2461 | T2460 | arg2Of | 27,[ |
R1591 | T2462 | T2460 | arg3Of | ],[ |
R1598 | T2465 | T2466 | arg1Of | it,appears |
R1600 | T2466 | T2463 | arg1Of | appears,Thus |
R1601 | T2466 | T2464 | arg1Of | appears,"," |
R1602 | T2469 | T2468 | arg1Of | silencing,the |
R1603 | T2469 | T2470 | arg1Of | silencing,of |
R1604 | T2469 | T2474 | arg1Of | silencing,involves |
R1605 | T2473 | T2470 | arg2Of | gene,of |
R1606 | T2473 | T2471 | arg1Of | gene,the |
R1607 | T2473 | T2472 | arg1Of | gene,ɛ |
R1608 | T2474 | T2466 | arg2Of | involves,appears |
R1609 | T2474 | T2467 | arg1Of | involves,that |
R1610 | T2477 | T2474 | arg2Of | network,involves |
R1611 | T2477 | T2475 | arg1Of | network,a |
R1612 | T2477 | T2476 | arg1Of | network,complicated |
R1613 | T2477 | T2478 | arg1Of | network,of |
R1617 | T2481 | T2479 | arg1Of | elements,multiple |
R1618 | T2481 | T2480 | arg1Of | elements,cis |
R1619 | T2481 | T2482 | arg1Of | elements,and |
R1621 | T2482 | T2478 | arg2Of | and,of |
R1622 | T2484 | T2482 | arg2Of | proteins,and |
R1623 | T2484 | T2483 | arg1Of | proteins,transacting |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1456 | 664-665 | Protein | denotes | ɛ |
T1455 | 603-604 | Protein | denotes | ɛ |
T1454 | 485-489 | Protein | denotes | DRED |
T1453 | 472-479 | Protein | denotes | COUP-TF |
T1452 | 466-470 | Protein | denotes | YY-1 |
T1451 | 458-464 | Protein | denotes | GATA-1 |
T1450 | 385-386 | Protein | denotes | ɛ |
T1449 | 76-77 | Protein | denotes | ɛ |
T1448 | 47-55 | Protein | denotes | ɛ globin |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1270 | 49-55 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
T1241 | 427-440 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1476 | 49-55 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1498 | 572-589 | http://purl.obolibrary.org/obo/GO_0043234 | denotes | protein complexes |
T1492 | 234-238 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1226 | 621-752 | Sentence | denotes | Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins. |
T1225 | 407-620 | Sentence | denotes | Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. |
T1224 | 170-406 | Sentence | denotes | Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. |
T1223 | 0-169 | Sentence | denotes | All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. |
T43 | 0-169 | Sentence | denotes | All the elements responsible for silencing the ɛ globin gene are within the ɛ gene or in adjacent sequences [27], suggesting that silencing is primarily gene autonomous. |
T44 | 170-406 | Sentence | denotes | Using promoter deletion analyses in transgenic mouse models and cell transfection assays, multiple DNA elements important to the silencing process have been previously identified in both the proximal and the distal ɛ gene promoter [27]. |
T45 | 407-620 | Sentence | denotes | Their corresponding transcription factors, such as GATA-1, YY-1, COUP-TF, and DRED have been identified and shown to directly bind to these DNA elements (as part of protein complexes) to regulate ɛ silencing [27]. |
T46 | 621-752 | Sentence | denotes | Thus, it appears that the silencing of the ɛ gene involves a complicated network of multiple cis elements and transacting proteins. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1683 | 664-665 | Protein | denotes | ɛ |
T1682 | 603-604 | Protein | denotes | ɛ |
T1681 | 485-489 | Protein | denotes | DRED |
T1680 | 472-479 | Protein | denotes | COUP-TF |
T1679 | 466-470 | Protein | denotes | YY-1 |
T1678 | 458-464 | Protein | denotes | GATA-1 |
T1677 | 385-386 | Protein | denotes | ɛ |
T1676 | 76-77 | Protein | denotes | ɛ |
T1675 | 47-55 | Protein | denotes | ɛ globin |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4291 | 647-656 | Negative_regulation | denotes | silencing |
T4290 | 605-614 | Negative_regulation | denotes | silencing |
T4289 | 533-537 | Binding | denotes | bind |
T4288 | 594-602 | Regulation | denotes | regulate |
T4287 | 33-42 | Negative_regulation | denotes | silencing |
T4261 | 664-665 | Protein | denotes | ɛ |
T4260 | 603-604 | Protein | denotes | ɛ |
T4259 | 485-489 | Protein | denotes | DRED |
T4258 | 472-479 | Protein | denotes | COUP-TF |
T4257 | 466-470 | Protein | denotes | YY-1 |
T4256 | 458-464 | Protein | denotes | GATA-1 |
T4255 | 385-386 | Protein | denotes | ɛ |
T4254 | 76-77 | Protein | denotes | ɛ |
T4253 | 47-55 | Protein | denotes | ɛ globin |
R3043 | T4253 | T4287 | themeOf | ɛ globin,silencing |
R3044 | T4258 | T4289 | themeOf | COUP-TF,bind |
R3045 | T4260 | T4288 | themeOf | ɛ,regulate |
R3046 | T4260 | T4290 | themeOf | ɛ,silencing |
R3047 | T4261 | T4291 | themeOf | ɛ,silencing |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2753 | 647-656 | Negative_regulation | denotes | silencing |
T2752 | 605-614 | Negative_regulation | denotes | silencing |
T2751 | 594-602 | Regulation | denotes | regulate |
T2750 | 533-537 | Binding | denotes | bind |
T2749 | 33-42 | Negative_regulation | denotes | silencing |
T2725 | 664-665 | Protein | denotes | ɛ |
T2724 | 603-604 | Protein | denotes | ɛ |
T2723 | 485-489 | Protein | denotes | DRED |
T2722 | 472-479 | Protein | denotes | COUP-TF |
T2721 | 466-470 | Protein | denotes | YY-1 |
T2720 | 458-464 | Protein | denotes | GATA-1 |
T2719 | 385-386 | Protein | denotes | ɛ |
T2718 | 76-77 | Protein | denotes | ɛ |
T2717 | 47-55 | Protein | denotes | ɛ globin |
R1816 | T2717 | T2749 | themeOf | ɛ globin,silencing |
R1820 | T2720 | T2750 | themeOf | GATA-1,bind |
R1822 | T2724 | T2752 | themeOf | ɛ,silencing |
R1826 | T2725 | T2753 | themeOf | ɛ,silencing |
R1859 | T2752 | T2751 | themeOf | silencing,regulate |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2833 | 647-656 | Negative_regulation | denotes | silencing |
T2832 | 594-602 | Regulation | denotes | regulate |
T2831 | 605-614 | Negative_regulation | denotes | silencing |
T2830 | 33-42 | Negative_regulation | denotes | silencing |
T2803 | 664-665 | Protein | denotes | ɛ |
T2802 | 603-604 | Protein | denotes | ɛ |
T2801 | 485-489 | Protein | denotes | DRED |
T2800 | 472-479 | Protein | denotes | COUP-TF |
T2799 | 466-470 | Protein | denotes | YY-1 |
T2798 | 458-464 | Protein | denotes | GATA-1 |
T2797 | 385-386 | Protein | denotes | ɛ |
T2796 | 76-77 | Protein | denotes | ɛ |
T2795 | 47-55 | Protein | denotes | ɛ globin |
R1878 | T2795 | T2830 | themeOf | ɛ globin,silencing |
R1882 | T2800 | T2832 | causeOf | COUP-TF,regulate |
R1883 | T2802 | T2831 | themeOf | ɛ,silencing |
R1884 | T2803 | T2833 | themeOf | ɛ,silencing |
R1886 | T2831 | T2832 | themeOf | silencing,regulate |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4107 | 43-60 | Protein | denotes | the ɛ globin gene |
T4096 | 743-751 | Protein | denotes | proteins |
T4089 | 714-717 | Protein | denotes | cis |
T4077 | 385-386 | Protein | denotes | ɛ |
T4054 | 269-272 | Entity | denotes | DNA |
T4049 | 603-604 | Protein | denotes | ɛ |
T4035 | 374-405 | Entity | denotes | the distal ɛ gene promoter [27] |
T4033 | 72-82 | Protein | denotes | the ɛ gene |
T4217 | 594-604 | Regulation | denotes | regulate ɛ |
T4193 | 29-60 | Negative_regulation | denotes | for silencing the ɛ globin gene |
T4192 | 643-670 | Negative_regulation | denotes | the silencing of the ɛ gene |
T4186 | 485-489 | Protein | denotes | DRED |
T4181 | 458-464 | Protein | denotes | GATA-1 |
T4142 | 76-77 | Protein | denotes | ɛ |
T4140 | 176-184 | Entity | denotes | promoter |
T4136 | 466-470 | Protein | denotes | YY-1 |
T4134 | 153-168 | Protein | denotes | gene autonomous |
T4128 | 43-60 | Protein | denotes | the ɛ globin gene |
T4125 | 657-670 | Protein | denotes | of the ɛ gene |
T4124 | 472-479 | Protein | denotes | COUP-TF |
T4158 | 569-589 | Entity | denotes | of protein complexes |
T4156 | 374-405 | Protein | denotes | the distal ɛ gene promoter [27] |
T4174 | 664-665 | Protein | denotes | ɛ |
T4167 | 547-550 | Entity | denotes | DNA |
T4164 | 47-48 | Protein | denotes | ɛ |
T4161 | 234-238 | Entity | denotes | cell |
R2966 | T4049 | T4217 | themeOf | ɛ,regulate ɛ |
R2962 | T4035 | T4077 | partOf | the distal ɛ gene promoter [27],ɛ |
R3004 | T4125 | T4192 | themeOf | of the ɛ gene,the silencing of the ɛ gene |
R3006 | T4128 | T4193 | themeOf | the ɛ globin gene,for silencing the ɛ globin gene |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3689 | 521-523 | TO | denotes | to |
T3688 | 515-520 | VBN | denotes | shown |
T3687 | 511-514 | CC | denotes | and |
T3686 | 500-510 | VBN | denotes | identified |
T3685 | 495-499 | VBN | denotes | been |
T3684 | 490-494 | VBP | denotes | have |
T3683 | 485-489 | NNP | denotes | DRED |
T3682 | 481-484 | CC | denotes | and |
T3681 | 479-480 | , | denotes | , |
T3680 | 472-479 | NNP | denotes | COUP-TF |
T3679 | 470-471 | , | denotes | , |
T3678 | 466-470 | NNP | denotes | YY-1 |
T3677 | 464-465 | , | denotes | , |
T3676 | 458-464 | NNP | denotes | GATA-1 |
T3675 | 455-457 | IN | denotes | as |
T3674 | 450-454 | JJ | denotes | such |
T3673 | 448-449 | , | denotes | , |
T3672 | 441-448 | NNS | denotes | factors |
T3671 | 427-440 | NN | denotes | transcription |
T3670 | 413-426 | JJ | denotes | corresponding |
T3669 | 407-412 | PRP$ | denotes | Their |
T3668 | 405-406 | . | denotes | . |
T3667 | 404-405 | NNP | denotes | ] |
T3666 | 402-404 | CD | denotes | 27 |
T3665 | 401-402 | NNP | denotes | [ |
T3664 | 392-400 | NN | denotes | promoter |
T3663 | 387-391 | NN | denotes | gene |
T3662 | 385-386 | NN | denotes | ɛ |
T3661 | 378-384 | JJ | denotes | distal |
T3660 | 374-377 | DT | denotes | the |
T3659 | 370-373 | CC | denotes | and |
T3658 | 361-369 | NN | denotes | proximal |
T3657 | 357-360 | DT | denotes | the |
T3656 | 352-356 | DT | denotes | both |
T3655 | 349-351 | IN | denotes | in |
T3654 | 338-348 | VBN | denotes | identified |
T3653 | 327-337 | RB | denotes | previously |
T3652 | 322-326 | VBN | denotes | been |
T3651 | 317-321 | VBP | denotes | have |
T3650 | 309-316 | NN | denotes | process |
T3649 | 299-308 | VBG | denotes | silencing |
T3648 | 295-298 | DT | denotes | the |
T3647 | 292-294 | TO | denotes | to |
T3646 | 282-291 | JJ | denotes | important |
T3645 | 273-281 | NNS | denotes | elements |
T3644 | 269-272 | NNP | denotes | DNA |
T3643 | 260-268 | JJ | denotes | multiple |
T3642 | 258-259 | , | denotes | , |
T3641 | 252-258 | NNS | denotes | assays |
T3640 | 239-251 | NN | denotes | transfection |
T3639 | 234-238 | NN | denotes | cell |
T3638 | 230-233 | CC | denotes | and |
T3637 | 223-229 | NNS | denotes | models |
T3636 | 217-222 | NN | denotes | mouse |
T3635 | 206-216 | JJ | denotes | transgenic |
T3634 | 203-205 | IN | denotes | in |
T3633 | 194-202 | NNS | denotes | analyses |
T3632 | 185-193 | NN | denotes | deletion |
T3631 | 176-184 | NN | denotes | promoter |
T3630 | 170-175 | VBG | denotes | Using |
T3629 | 168-169 | . | denotes | . |
T3628 | 158-168 | JJ | denotes | autonomous |
T3627 | 153-157 | NN | denotes | gene |
T3626 | 143-152 | RB | denotes | primarily |
T3625 | 140-142 | VBZ | denotes | is |
T3624 | 130-139 | VBG | denotes | silencing |
T3623 | 125-129 | IN | denotes | that |
T3622 | 114-124 | VBG | denotes | suggesting |
T3621 | 112-113 | , | denotes | , |
T3620 | 111-112 | NNP | denotes | ] |
T3619 | 109-111 | CD | denotes | 27 |
T3618 | 108-109 | NNP | denotes | [ |
T3617 | 98-107 | NNS | denotes | sequences |
T3616 | 89-97 | JJ | denotes | adjacent |
T3615 | 86-88 | IN | denotes | in |
T3614 | 83-85 | CC | denotes | or |
T3613 | 78-82 | NN | denotes | gene |
T3612 | 76-77 | NN | denotes | ɛ |
T3611 | 72-75 | DT | denotes | the |
T3610 | 65-71 | IN | denotes | within |
T3609 | 61-64 | VBP | denotes | are |
T3608 | 56-60 | NN | denotes | gene |
T3607 | 49-55 | NN | denotes | globin |
T3606 | 47-48 | NN | denotes | ɛ |
T3605 | 43-46 | DT | denotes | the |
T3604 | 33-42 | VBG | denotes | silencing |
T3603 | 29-32 | IN | denotes | for |
T3602 | 17-28 | JJ | denotes | responsible |
T3601 | 8-16 | NNS | denotes | elements |
T3600 | 4-7 | DT | denotes | the |
T3599 | 0-3 | PDT | denotes | All |
T3733 | 751-752 | . | denotes | . |
T3732 | 743-751 | NNS | denotes | proteins |
T3731 | 731-742 | VBG | denotes | transacting |
T3730 | 727-730 | CC | denotes | and |
T3729 | 718-726 | NNS | denotes | elements |
T3728 | 714-717 | NN | denotes | cis |
T3727 | 705-713 | JJ | denotes | multiple |
T3726 | 702-704 | IN | denotes | of |
T3725 | 694-701 | NN | denotes | network |
T3724 | 682-693 | JJ | denotes | complicated |
T3723 | 680-681 | DT | denotes | a |
T3722 | 671-679 | VBZ | denotes | involves |
T3721 | 666-670 | NN | denotes | gene |
T3720 | 664-665 | NN | denotes | ɛ |
T3719 | 660-663 | DT | denotes | the |
T3718 | 657-659 | IN | denotes | of |
T3717 | 647-656 | NN | denotes | silencing |
T3716 | 643-646 | DT | denotes | the |
T3715 | 638-642 | IN | denotes | that |
T3714 | 630-637 | VBZ | denotes | appears |
T3713 | 627-629 | PRP | denotes | it |
T3712 | 625-626 | , | denotes | , |
T3711 | 621-625 | RB | denotes | Thus |
T3710 | 619-620 | . | denotes | . |
T3709 | 618-619 | NNP | denotes | ] |
T3708 | 616-618 | CD | denotes | 27 |
T3707 | 615-616 | NNP | denotes | [ |
T3706 | 605-614 | VBG | denotes | silencing |
T3705 | 603-604 | NN | denotes | ɛ |
T3704 | 594-602 | VB | denotes | regulate |
T3703 | 591-593 | TO | denotes | to |
T3702 | 589-590 | -RRB- | denotes | ) |
T3701 | 580-589 | NNS | denotes | complexes |
T3700 | 572-579 | NN | denotes | protein |
T3699 | 569-571 | IN | denotes | of |
T3698 | 564-568 | NN | denotes | part |
T3697 | 561-563 | IN | denotes | as |
T3696 | 560-561 | -LRB- | denotes | ( |
T3695 | 551-559 | NNS | denotes | elements |
T3694 | 547-550 | NNP | denotes | DNA |
T3693 | 541-546 | DT | denotes | these |
T3692 | 538-540 | TO | denotes | to |
T3691 | 533-537 | NN | denotes | bind |
T3690 | 524-532 | RB | denotes | directly |
R2582 | T3599 | T3601 | predet | All,elements |
R2584 | T3600 | T3601 | det | the,elements |
R2585 | T3601 | T3609 | nsubj | elements,are |
R2587 | T3602 | T3601 | amod | responsible,elements |
R2588 | T3603 | T3602 | prep | for,responsible |
R2589 | T3604 | T3603 | pcomp | silencing,for |
R2593 | T3605 | T3608 | det | the,gene |
R2594 | T3606 | T3608 | nmod | ɛ,gene |
R2596 | T3607 | T3608 | compound | globin,gene |
R2597 | T3608 | T3604 | dobj | gene,silencing |
R2599 | T3609 | T3609 | ROOT | are,are |
R2600 | T3610 | T3609 | prep | within,are |
R2601 | T3611 | T3613 | det | the,gene |
R2603 | T3612 | T3613 | compound | ɛ,gene |
R2604 | T3613 | T3610 | pobj | gene,within |
R2605 | T3614 | T3610 | cc | or,within |
R2607 | T3615 | T3610 | conj | in,within |
R2608 | T3616 | T3617 | amod | adjacent,sequences |
R2610 | T3617 | T3615 | pobj | sequences,in |
R2611 | T3618 | T3620 | nmod | [,] |
R2613 | T3619 | T3620 | nummod | 27,] |
R2614 | T3620 | T3609 | attr | ],are |
R2615 | T3621 | T3609 | punct | ",",are |
R2617 | T3622 | T3609 | advcl | suggesting,are |
R2618 | T3623 | T3625 | mark | that,is |
R2619 | T3624 | T3625 | csubj | silencing,is |
R2620 | T3625 | T3622 | ccomp | is,suggesting |
R2621 | T3626 | T3627 | advmod | primarily,gene |
R2622 | T3627 | T3625 | attr | gene,is |
R2624 | T3628 | T3627 | amod | autonomous,gene |
R2625 | T3629 | T3609 | punct | .,are |
R2626 | T3630 | T3654 | csubj | Using,identified |
R2628 | T3631 | T3632 | compound | promoter,deletion |
R2629 | T3632 | T3633 | compound | deletion,analyses |
R2630 | T3633 | T3630 | dobj | analyses,Using |
R2632 | T3634 | T3633 | prep | in,analyses |
R2633 | T3635 | T3637 | amod | transgenic,models |
R2635 | T3636 | T3637 | compound | mouse,models |
R2636 | T3637 | T3634 | pobj | models,in |
R2637 | T3638 | T3637 | cc | and,models |
R2639 | T3639 | T3640 | compound | cell,transfection |
R2640 | T3640 | T3641 | compound | transfection,assays |
R2641 | T3641 | T3637 | conj | assays,models |
R2643 | T3642 | T3641 | punct | ",",assays |
R2644 | T3643 | T3645 | amod | multiple,elements |
R2646 | T3644 | T3645 | compound | DNA,elements |
R2647 | T3645 | T3641 | conj | elements,assays |
R2648 | T3646 | T3645 | amod | important,elements |
R2650 | T3647 | T3646 | prep | to,important |
R2651 | T3648 | T3650 | det | the,process |
R2652 | T3649 | T3650 | amod | silencing,process |
R2654 | T3650 | T3647 | pobj | process,to |
R2655 | T3651 | T3654 | aux | have,identified |
R2656 | T3652 | T3654 | auxpass | been,identified |
R2657 | T3702 | T3688 | punct | ),shown |
R2658 | T3653 | T3654 | advmod | previously,identified |
R2659 | T3654 | T3654 | ROOT | identified,identified |
R2660 | T3655 | T3654 | prep | in,identified |
R2661 | T3656 | T3658 | preconj | both,proximal |
R2662 | T3703 | T3704 | aux | to,regulate |
R2663 | T3657 | T3658 | det | the,proximal |
R2664 | T3658 | T3655 | pobj | proximal,in |
R2665 | T3659 | T3658 | cc | and,proximal |
R2666 | T3704 | T3688 | advcl | regulate,shown |
R2667 | T3660 | T3664 | det | the,promoter |
R2668 | T3661 | T3664 | amod | distal,promoter |
R2669 | T3662 | T3664 | compound | ɛ,promoter |
R2670 | T3705 | T3704 | dobj | ɛ,regulate |
R2671 | T3663 | T3664 | compound | gene,promoter |
R2672 | T3664 | T3658 | conj | promoter,proximal |
R2673 | T3665 | T3667 | nmod | [,] |
R2674 | T3706 | T3705 | acl | silencing,ɛ |
R2675 | T3666 | T3667 | nummod | 27,] |
R2676 | T3667 | T3664 | appos | ],promoter |
R2677 | T3707 | T3709 | nmod | [,] |
R2678 | T3668 | T3654 | punct | .,identified |
R2679 | T3669 | T3672 | poss | Their,factors |
R2680 | T3670 | T3672 | amod | corresponding,factors |
R2681 | T3708 | T3709 | nummod | 27,] |
R2682 | T3671 | T3672 | compound | transcription,factors |
R2683 | T3709 | T3706 | dobj | ],silencing |
R2684 | T3672 | T3686 | nsubjpass | factors,identified |
R2685 | T3673 | T3672 | punct | ",",factors |
R2686 | T3674 | T3675 | amod | such,as |
R2687 | T3710 | T3686 | punct | .,identified |
R2688 | T3675 | T3672 | prep | as,factors |
R2689 | T3676 | T3675 | pobj | GATA-1,as |
R2690 | T3677 | T3676 | punct | ",",GATA-1 |
R2691 | T3711 | T3714 | advmod | Thus,appears |
R2692 | T3678 | T3676 | conj | YY-1,GATA-1 |
R2693 | T3679 | T3678 | punct | ",",YY-1 |
R2694 | T3712 | T3714 | punct | ",",appears |
R2695 | T3680 | T3678 | conj | COUP-TF,YY-1 |
R2696 | T3681 | T3680 | punct | ",",COUP-TF |
R2697 | T3682 | T3680 | cc | and,COUP-TF |
R2698 | T3713 | T3714 | nsubj | it,appears |
R2699 | T3683 | T3680 | conj | DRED,COUP-TF |
R2700 | T3684 | T3686 | aux | have,identified |
R2701 | T3685 | T3686 | auxpass | been,identified |
R2702 | T3714 | T3714 | ROOT | appears,appears |
R2703 | T3686 | T3686 | ROOT | identified,identified |
R2704 | T3687 | T3686 | cc | and,identified |
R2705 | T3688 | T3686 | conj | shown,identified |
R2706 | T3715 | T3722 | mark | that,involves |
R2707 | T3689 | T3691 | aux | to,bind |
R2708 | T3690 | T3691 | advmod | directly,bind |
R2709 | T3691 | T3688 | xcomp | bind,shown |
R2710 | T3716 | T3717 | det | the,silencing |
R2711 | T3692 | T3691 | prep | to,bind |
R2712 | T3693 | T3695 | det | these,elements |
R2713 | T3694 | T3695 | compound | DNA,elements |
R2714 | T3717 | T3722 | nsubj | silencing,involves |
R2715 | T3695 | T3692 | pobj | elements,to |
R2716 | T3696 | T3695 | punct | (,elements |
R2717 | T3697 | T3688 | prep | as,shown |
R2718 | T3698 | T3697 | pobj | part,as |
R2719 | T3699 | T3698 | prep | of,part |
R2720 | T3700 | T3701 | compound | protein,complexes |
R2721 | T3718 | T3717 | prep | of,silencing |
R2722 | T3701 | T3699 | pobj | complexes,of |
R2723 | T3719 | T3721 | det | the,gene |
R2724 | T3720 | T3721 | compound | ɛ,gene |
R2725 | T3721 | T3718 | pobj | gene,of |
R2727 | T3722 | T3714 | ccomp | involves,appears |
R2728 | T3723 | T3725 | det | a,network |
R2731 | T3724 | T3725 | amod | complicated,network |
R2734 | T3725 | T3722 | dobj | network,involves |
R2737 | T3726 | T3725 | prep | of,network |
R2741 | T3727 | T3729 | amod | multiple,elements |
R2744 | T3728 | T3729 | compound | cis,elements |
R2748 | T3729 | T3726 | pobj | elements,of |
R2752 | T3730 | T3729 | cc | and,elements |
R2755 | T3731 | T3732 | amod | transacting,proteins |
R2757 | T3732 | T3729 | conj | proteins,elements |
R2759 | T3733 | T3714 | punct | .,appears |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1560 | 533-537 | Binding | denotes | bind |
T1559 | 472-479 | Protein | denotes | COUP-TF |
T1558 | 466-470 | Protein | denotes | YY-1 |
T1557 | 458-464 | Protein | denotes | GATA-1 |
T1556 | 33-42 | Negative_regulation | denotes | silencing |
T1555 | 47-60 | Protein | denotes | ɛ globin gene |
R779 | T1555 | T1556 | themeOf | ɛ globin gene,silencing |
R780 | T1558 | T1560 | themeOf | YY-1,bind |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1053 | 647-656 | Negative_regulation | denotes | silencing |
T1052 | 605-614 | Negative_regulation | denotes | silencing |
T1051 | 594-602 | Regulation | denotes | regulate |
T1050 | 533-537 | Binding | denotes | bind |
T1049 | 130-139 | Negative_regulation | denotes | silencing |
T1048 | 33-42 | Negative_regulation | denotes | silencing |
T1019 | 664-665 | Protein | denotes | ɛ |
T1018 | 603-604 | Protein | denotes | ɛ |
T1017 | 485-489 | Protein | denotes | DRED |
T1016 | 472-479 | Protein | denotes | COUP-TF |
T1015 | 466-470 | Protein | denotes | YY-1 |
T1014 | 458-464 | Protein | denotes | GATA-1 |
T1013 | 385-386 | Protein | denotes | ɛ |
T1012 | 76-77 | Protein | denotes | ɛ |
T1011 | 47-55 | Protein | denotes | ɛ globin |
R614 | T1011 | T1048 | themeOf | ɛ globin,silencing |
R615 | T1014 | T1050 | themeOf | GATA-1,bind |
R616 | T1015 | T1050 | themeOf | YY-1,bind |
R617 | T1016 | T1050 | themeOf | COUP-TF,bind |
R618 | T1017 | T1050 | themeOf | DRED,bind |
R619 | T1018 | T1052 | themeOf | ɛ,silencing |
R620 | T1019 | T1053 | themeOf | ɛ,silencing |
R635 | T1050 | T1051 | causeOf | bind,regulate |
R636 | T1052 | T1051 | themeOf | silencing,regulate |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1168 | 76-77 | Protein | denotes | ɛ |
T1167 | 47-55 | Protein | denotes | ɛ globin |
T1166 | 33-42 | Negative_regulation | denotes | silencing |
T1107 | 664-665 | Protein | denotes | ɛ |
T1106 | 603-604 | Protein | denotes | ɛ |
T1105 | 485-489 | Protein | denotes | DRED |
T1104 | 472-479 | Protein | denotes | COUP-TF |
T1103 | 466-470 | Protein | denotes | YY-1 |
T1102 | 458-464 | Protein | denotes | GATA-1 |
T1101 | 385-386 | Protein | denotes | ɛ |
T1100 | 76-77 | Protein | denotes | ɛ |
T1099 | 47-55 | Protein | denotes | ɛ globin |
T1179 | 664-665 | Protein | denotes | ɛ |
T1178 | 647-656 | Negative_regulation | denotes | silencing |
T1177 | 605-614 | Negative_regulation | denotes | silencing |
T1176 | 603-604 | Protein | denotes | ɛ |
T1175 | 594-602 | Regulation | denotes | regulate |
T1174 | 533-537 | Binding | denotes | bind |
T1173 | 485-489 | Protein | denotes | DRED |
T1172 | 472-479 | Protein | denotes | COUP-TF |
T1171 | 466-470 | Protein | denotes | YY-1 |
T1170 | 458-464 | Protein | denotes | GATA-1 |
T1169 | 385-386 | Protein | denotes | ɛ |
R662 | T1173 | T1174 | themeOf | DRED,bind |
R663 | T1173 | T1175 | causeOf | DRED,regulate |
R664 | T1174 | T1175 | causeOf | bind,regulate |
R665 | T1176 | T1177 | themeOf | ɛ,silencing |
R666 | T1177 | T1175 | themeOf | silencing,regulate |
R667 | T1179 | T1178 | themeOf | ɛ,silencing |
R656 | T1167 | T1166 | themeOf | ɛ globin,silencing |
R657 | T1168 | T1166 | themeOf | ɛ,silencing |
R658 | T1170 | T1174 | themeOf | GATA-1,bind |
R659 | T1171 | T1174 | themeOf | YY-1,bind |
R660 | T1172 | T1174 | themeOf | COUP-TF,bind |
R661 | T1172 | T1175 | causeOf | COUP-TF,regulate |