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PMC:1359074 / 4628-4847 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-10760285-85760966 86-88 10760285 denotes 14
16462943-11310796-85760967 144-146 11310796 denotes 16
T42 86-88 10760285 denotes 14
T20259 144-146 11310796 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2052 206-216 NN denotes phenotypes
T2051 200-205 JJ denotes other
T2050 196-199 DT denotes all
T2049 193-195 IN denotes in
T2048 182-192 VB denotes implicated
T2047 179-181 VB denotes is
T2046 172-178 NN denotes factor
T2045 158-171 NN denotes transcription
T2044 153-157 NN denotes Sox6
T2043 149-152 DT denotes the
T2042 147-148 -COMMA- denotes ,
T2041 146-147 -RRB- denotes ]
T2040 144-146 CD denotes 16
T2039 143-144 -LRB- denotes [
T2038 130-142 NN denotes pigmentation
T2037 127-129 IN denotes in
T2036 120-126 RB denotes solely
T2035 110-119 VB denotes functions
T2034 105-109 NN denotes gene
T2033 103-104 NN denotes p
T2032 99-102 DT denotes the
T2031 91-98 IN denotes Because
T2030 88-89 -RRB- denotes ]
T2029 86-88 CD denotes 14
T2028 85-86 -LRB- denotes [
T2027 83-84 -RRB- denotes )
T2026 72-83 NN denotes breakpoints
T2025 60-71 JJ denotes chromosomal
T2024 56-59 DT denotes the
T2023 53-55 IN denotes of
T2022 41-52 NN denotes nucleotides
T2021 34-40 CD denotes 50,000
T2020 27-33 IN denotes within
T2019 22-26 NN denotes gene
T2018 16-21 JJ denotes other
T2017 13-15 DT denotes no
T2016 9-12 CC denotes and
T2015 8-9 -LRB- denotes (
T2014 3-7 NN denotes gene
R1132 T2014 T2015 arg1Of gene,(
R1133 T2019 T2015 arg2Of gene,(
R1134 T2019 T2016 arg1Of gene,and
R1135 T2019 T2017 arg1Of gene,no
R1136 T2019 T2018 arg1Of gene,other
R1137 T2019 T2020 arg1Of gene,within
R1138 T2022 T2020 arg2Of nucleotides,within
R1139 T2022 T2021 arg1Of nucleotides,"50,000"
R1140 T2022 T2023 arg1Of nucleotides,of
R1141 T2026 T2023 arg2Of breakpoints,of
R1142 T2026 T2024 arg1Of breakpoints,the
R1143 T2026 T2025 arg1Of breakpoints,chromosomal
R1144 T2027 T2015 arg3Of ),(
R1145 T2029 T2028 arg2Of 14,[
R1146 T2030 T2028 arg3Of ],[
R1147 T2034 T2032 arg1Of gene,the
R1148 T2034 T2033 arg1Of gene,p
R1149 T2034 T2035 arg1Of gene,functions
R1150 T2035 T2031 arg2Of functions,Because
R1151 T2035 T2036 arg1Of functions,solely
R1152 T2035 T2037 arg1Of functions,in
R1153 T2038 T2037 arg2Of pigmentation,in
R1154 T2038 T2039 arg1Of pigmentation,[
R1155 T2040 T2039 arg2Of 16,[
R1156 T2041 T2039 arg3Of ],[
R1157 T2046 T2043 arg1Of factor,the
R1158 T2046 T2044 arg1Of factor,Sox6
R1159 T2046 T2045 arg1Of factor,transcription
R1160 T2046 T2047 arg1Of factor,is
R1161 T2046 T2048 arg2Of factor,implicated
R1162 T2048 T2031 arg1Of implicated,Because
R1163 T2048 T2042 arg1Of implicated,","
R1164 T2048 T2047 arg2Of implicated,is
R1165 T2048 T2049 arg1Of implicated,in
R1166 T2052 T2049 arg2Of phenotypes,in
R1167 T2052 T2050 arg1Of phenotypes,all
R1168 T2052 T2051 arg1Of phenotypes,other

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1429 153-157 Protein denotes Sox6
T1428 103-104 Protein denotes p

GO-BP

Id Subject Object Predicate Lexical cue
T1263 130-142 http://purl.obolibrary.org/obo/GO_0043473 denotes pigmentation
T1239 158-171 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T1210 91-217 Sentence denotes Because the p gene functions solely in pigmentation [16], the Sox6 transcription factor is implicated in all other phenotypes.
T30 91-217 Sentence denotes Because the p gene functions solely in pigmentation [16], the Sox6 transcription factor is implicated in all other phenotypes.

simple1

Id Subject Object Predicate Lexical cue
T1656 153-157 Protein denotes Sox6
T1655 103-104 Protein denotes p

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4234 153-157 Protein denotes Sox6
T4233 103-104 Protein denotes p

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2698 153-157 Protein denotes Sox6
T2697 103-104 Protein denotes p

DLUT931

Id Subject Object Predicate Lexical cue
T2820 158-171 Transcription denotes transcription
T2776 153-157 Protein denotes Sox6
T2775 103-104 Protein denotes p
R1856 T2776 T2820 themeOf Sox6,transcription

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4100 99-109 Protein denotes the p gene
T4083 103-104 Protein denotes p
T4043 13-83 Protein denotes no other gene within 50,000 nucleotides of the chromosomal breakpoints
T4196 149-178 Transcription denotes the Sox6 transcription factor
T4133 153-157 Protein denotes Sox6
T4168 34-83 Entity denotes 50,000 nucleotides of the chromosomal breakpoints
R3011 T4133 T4196 themeOf Sox6,the Sox6 transcription factor

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3284 216-217 . denotes .
T3247 13-15 DT denotes no
T3246 9-12 CC denotes and
T3245 8-9 -LRB- denotes (
T3244 3-7 NN denotes gene
T3283 206-216 NNS denotes phenotypes
T3282 200-205 JJ denotes other
T3281 196-199 DT denotes all
T3280 193-195 IN denotes in
T3279 182-192 VBN denotes implicated
T3278 179-181 VBZ denotes is
T3277 172-178 NN denotes factor
T3276 158-171 NN denotes transcription
T3275 153-157 NNP denotes Sox6
T3274 149-152 DT denotes the
T3273 147-148 , denotes ,
T3272 146-147 NNP denotes ]
T3271 144-146 CD denotes 16
T3270 143-144 NNP denotes [
T3269 130-142 NN denotes pigmentation
T3268 127-129 IN denotes in
T3267 120-126 RB denotes solely
T3266 110-119 NNS denotes functions
T3265 105-109 NN denotes gene
T3264 103-104 NN denotes p
T3263 99-102 DT denotes the
T3262 91-98 IN denotes Because
T3261 89-90 . denotes .
T3260 88-89 NNP denotes ]
T3259 86-88 CD denotes 14
T3258 85-86 NNP denotes [
T3257 83-84 -RRB- denotes )
T3256 72-83 NNS denotes breakpoints
T3255 60-71 JJ denotes chromosomal
T3254 56-59 DT denotes the
T3253 53-55 IN denotes of
T3252 41-52 NNS denotes nucleotides
T3251 34-40 CD denotes 50,000
T3250 27-33 IN denotes within
T3249 22-26 NN denotes gene
T3248 16-21 JJ denotes other
R2230 T3245 T3244 punct (,gene
R2231 T3246 T3244 cc and,gene
R2232 T3247 T3249 det no,gene
R2234 T3248 T3249 amod other,gene
R2235 T3249 T3244 conj gene,gene
R2236 T3250 T3249 prep within,gene
R2238 T3251 T3252 nummod "50,000",nucleotides
R2239 T3252 T3250 pobj nucleotides,within
R2241 T3253 T3252 prep of,nucleotides
R2242 T3254 T3256 det the,breakpoints
R2243 T3255 T3256 amod chromosomal,breakpoints
R2245 T3256 T3253 pobj breakpoints,of
R2248 T3258 T3260 nmod [,]
R2249 T3259 T3260 nummod 14,]
R2250 T3260 T3260 ROOT ],]
R2251 T3261 T3260 punct .,]
R2253 T3262 T3279 mark Because,implicated
R2254 T3263 T3266 det the,functions
R2256 T3264 T3265 compound p,gene
R2257 T3265 T3266 compound gene,functions
R2258 T3266 T3279 advcl functions,implicated
R2260 T3267 T3268 advmod solely,in
R2261 T3268 T3266 prep in,functions
R2263 T3269 T3268 pobj pigmentation,in
R2265 T3270 T3272 nmod [,]
R2266 T3271 T3272 nummod 16,]
R2267 T3272 T3266 appos ],functions
R2268 T3273 T3279 punct ",",implicated
R2269 T3274 T3277 det the,factor
R2271 T3275 T3277 compound Sox6,factor
R2272 T3276 T3277 compound transcription,factor
R2274 T3277 T3279 nsubjpass factor,implicated
R2275 T3278 T3279 auxpass is,implicated
R2276 T3279 T3279 ROOT implicated,implicated
R2277 T3280 T3279 prep in,implicated
R2279 T3281 T3283 det all,phenotypes
R2280 T3282 T3283 amod other,phenotypes
R2281 T3283 T3280 pobj phenotypes,in
R2283 T3284 T3279 punct .,implicated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1529 153-178 Protein denotes Sox6 transcription factor
T1528 103-109 Protein denotes p gene

testone

Id Subject Object Predicate Lexical cue
T992 153-157 Protein denotes Sox6
T991 103-104 Protein denotes p

test3

Id Subject Object Predicate Lexical cue
T1137 153-157 Protein denotes Sox6
T1136 103-104 Protein denotes p
T1080 153-157 Protein denotes Sox6
T1079 103-104 Protein denotes p