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PMC:1359074 / 4489-4791 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-10760285-85760965 26-28 10760285 denotes 14
16462943-10760285-85760966 225-227 10760285 denotes 14
16462943-11310796-85760967 283-285 11310796 denotes 16
T66355 26-28 10760285 denotes 14
T42 225-227 10760285 denotes 14
T20259 283-285 11310796 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2044 292-296 NN denotes Sox6
T2043 288-291 DT denotes the
T2042 286-287 -COMMA- denotes ,
T2041 285-286 -RRB- denotes ]
T2040 283-285 CD denotes 16
T2039 282-283 -LRB- denotes [
T2038 269-281 NN denotes pigmentation
T2037 266-268 IN denotes in
T2036 259-265 RB denotes solely
T2035 249-258 VB denotes functions
T2034 244-248 NN denotes gene
T2033 242-243 NN denotes p
T2032 238-241 DT denotes the
T2031 230-237 IN denotes Because
T2030 227-228 -RRB- denotes ]
T2029 225-227 CD denotes 14
T2028 224-225 -LRB- denotes [
T2027 222-223 -RRB- denotes )
T2026 211-222 NN denotes breakpoints
T2025 199-210 JJ denotes chromosomal
T2024 195-198 DT denotes the
T2023 192-194 IN denotes of
T2022 180-191 NN denotes nucleotides
T2021 173-179 CD denotes 50,000
T2020 166-172 IN denotes within
T2019 161-165 NN denotes gene
T2018 155-160 JJ denotes other
T2017 152-154 DT denotes no
T2016 148-151 CC denotes and
T2015 147-148 -LRB- denotes (
T2006 104-112 VB denotes disrupts
T2005 99-103 WDT denotes that
T2004 89-98 NN denotes inversion
T2003 87-88 CD denotes 7
T2002 76-86 NN denotes Chromosome
T2001 74-75 DT denotes a
T2000 69-73 IN denotes with
T1999 58-68 VB denotes associated
T1998 55-57 VB denotes is
T1997 48-54 NN denotes allele
T1996 41-47 JJ denotes mutant
T1995 35-40 NN denotes p100H
T1994 31-34 DT denotes The
T1993 28-29 -RRB- denotes ]
T1992 26-28 CD denotes 14
T1991 25-26 -LRB- denotes [
T1990 19-24 NN denotes birth
T1989 13-18 IN denotes after
T1988 10-12 NN denotes wk
T1987 8-9 CD denotes 2
T1986 1-7 IN denotes within
T2014 142-146 NN denotes gene
T2013 137-141 NN denotes Sox6
T2012 133-136 DT denotes the
T2011 129-132 CC denotes and
T2010 124-128 NN denotes gene
T2009 122-123 NN denotes p
T2008 118-121 DT denotes the
T2007 113-117 CC denotes both
R1105 T1988 T1986 arg2Of wk,within
R1106 T1988 T1987 arg1Of wk,2
R1107 T1990 T1989 arg2Of birth,after
R1108 T1992 T1991 arg2Of 14,[
R1109 T1993 T1991 arg3Of ],[
R1110 T1997 T1994 arg1Of allele,The
R1111 T1997 T1995 arg1Of allele,p100H
R1112 T1997 T1996 arg1Of allele,mutant
R1113 T1997 T1998 arg1Of allele,is
R1114 T1997 T1999 arg2Of allele,associated
R1115 T1999 T1998 arg2Of associated,is
R1116 T1999 T2000 arg1Of associated,with
R1117 T2004 T2000 arg2Of inversion,with
R1118 T2004 T2001 arg1Of inversion,a
R1119 T2004 T2002 arg1Of inversion,Chromosome
R1120 T2004 T2003 arg1Of inversion,7
R1121 T2004 T2005 arg1Of inversion,that
R1122 T2004 T2006 arg1Of inversion,disrupts
R1123 T2006 T2028 arg1Of disrupts,[
R1124 T2010 T2008 arg1Of gene,the
R1125 T2010 T2009 arg1Of gene,p
R1126 T2010 T2011 arg1Of gene,and
R1127 T2011 T2006 arg2Of and,disrupts
R1128 T2011 T2007 arg1Of and,both
R1129 T2014 T2011 arg2Of gene,and
R1130 T2014 T2012 arg1Of gene,the
R1131 T2014 T2013 arg1Of gene,Sox6
R1132 T2014 T2015 arg1Of gene,(
R1133 T2019 T2015 arg2Of gene,(
R1134 T2019 T2016 arg1Of gene,and
R1135 T2019 T2017 arg1Of gene,no
R1136 T2019 T2018 arg1Of gene,other
R1137 T2019 T2020 arg1Of gene,within
R1138 T2022 T2020 arg2Of nucleotides,within
R1139 T2022 T2021 arg1Of nucleotides,"50,000"
R1140 T2022 T2023 arg1Of nucleotides,of
R1141 T2026 T2023 arg2Of breakpoints,of
R1142 T2026 T2024 arg1Of breakpoints,the
R1143 T2026 T2025 arg1Of breakpoints,chromosomal
R1144 T2027 T2015 arg3Of ),(
R1145 T2029 T2028 arg2Of 14,[
R1146 T2030 T2028 arg3Of ],[
R1147 T2034 T2032 arg1Of gene,the
R1148 T2034 T2033 arg1Of gene,p
R1149 T2034 T2035 arg1Of gene,functions
R1150 T2035 T2031 arg2Of functions,Because
R1151 T2035 T2036 arg1Of functions,solely
R1152 T2035 T2037 arg1Of functions,in
R1153 T2038 T2037 arg2Of pigmentation,in
R1154 T2038 T2039 arg1Of pigmentation,[
R1155 T2040 T2039 arg2Of 16,[
R1156 T2041 T2039 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1429 292-296 Protein denotes Sox6
T1428 242-243 Protein denotes p
T1427 137-141 Protein denotes Sox6
T1426 122-123 Protein denotes p

GO-BP

Id Subject Object Predicate Lexical cue
T1263 269-281 http://purl.obolibrary.org/obo/GO_0043473 denotes pigmentation

GO-CC

Id Subject Object Predicate Lexical cue
T1494 76-86 http://purl.obolibrary.org/obo/GO_0005694 denotes Chromosome

sentences

Id Subject Object Predicate Lexical cue
T1209 31-229 Sentence denotes The p100H mutant allele is associated with a Chromosome 7 inversion that disrupts both the p gene and the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints) [14].
T29 31-229 Sentence denotes The p100H mutant allele is associated with a Chromosome 7 inversion that disrupts both the p gene and the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints) [14].

simple1

Id Subject Object Predicate Lexical cue
T1656 292-296 Protein denotes Sox6
T1655 242-243 Protein denotes p
T1654 137-141 Protein denotes Sox6
T1653 122-123 Protein denotes p

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4277 104-112 Negative_regulation denotes disrupts
T4234 292-296 Protein denotes Sox6
T4233 242-243 Protein denotes p
T4232 137-141 Protein denotes Sox6
T4231 122-123 Protein denotes p
R3029 T4231 T4277 themeOf p,disrupts
R3030 T4232 T4277 themeOf Sox6,disrupts

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2741 104-112 Negative_regulation denotes disrupts
T2698 292-296 Protein denotes Sox6
T2697 242-243 Protein denotes p
T2696 137-141 Protein denotes Sox6
T2695 122-123 Protein denotes p
R1786 T2696 T2741 themeOf Sox6,disrupts

DLUT931

Id Subject Object Predicate Lexical cue
T2819 104-112 Negative_regulation denotes disrupts
T2776 292-296 Protein denotes Sox6
T2775 242-243 Protein denotes p
T2774 137-141 Protein denotes Sox6
T2773 122-123 Protein denotes p
R1855 T2774 T2819 themeOf Sox6,disrupts
R1854 T2773 T2819 themeOf p,disrupts

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4100 238-248 Protein denotes the p gene
T4083 242-243 Protein denotes p
T4064 69-86 Entity denotes with a Chromosome
T4045 118-128 Protein denotes the p gene
T4043 152-222 Protein denotes no other gene within 50,000 nucleotides of the chromosomal breakpoints
T4032 31-54 Protein denotes The p100H mutant allele
T4212 31-88 Binding denotes The p100H mutant allele is associated with a Chromosome 7
T4139 137-141 Protein denotes Sox6
T4133 292-296 Protein denotes Sox6
T4127 122-123 Protein denotes p
T4150 133-223 Protein denotes the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints)
T4168 173-222 Entity denotes 50,000 nucleotides of the chromosomal breakpoints
R2959 T4032 T4212 themeOf The p100H mutant allele,The p100H mutant allele is associated with a Chromosome 7
R2997 T4064 T4212 themeOf with a Chromosome,The p100H mutant allele is associated with a Chromosome 7

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3247 152-154 DT denotes no
T3246 148-151 CC denotes and
T3245 147-148 -LRB- denotes (
T3244 142-146 NN denotes gene
T3243 137-141 NNP denotes Sox6
T3242 133-136 DT denotes the
T3241 129-132 CC denotes and
T3240 124-128 NN denotes gene
T3239 122-123 NN denotes p
T3238 118-121 DT denotes the
T3237 113-117 CC denotes both
T3236 104-112 VBZ denotes disrupts
T3235 99-103 WDT denotes that
T3234 89-98 NN denotes inversion
T3233 87-88 CD denotes 7
T3232 76-86 NN denotes Chromosome
T3231 74-75 DT denotes a
T3230 69-73 IN denotes with
T3229 58-68 VBN denotes associated
T3228 55-57 VBZ denotes is
T3227 48-54 NN denotes allele
T3226 41-47 JJ denotes mutant
T3225 35-40 JJ denotes p100H
T3224 31-34 DT denotes The
T3223 29-30 . denotes .
T3222 28-29 NNP denotes ]
T3221 26-28 CD denotes 14
T3220 25-26 NNP denotes [
T3219 19-24 NN denotes birth
T3218 13-18 IN denotes after
T3217 10-12 NN denotes wk
T3216 8-9 CD denotes 2
T3215 1-7 IN denotes within
T3275 292-296 NNP denotes Sox6
T3274 288-291 DT denotes the
T3273 286-287 , denotes ,
T3272 285-286 NNP denotes ]
T3271 283-285 CD denotes 16
T3270 282-283 NNP denotes [
T3269 269-281 NN denotes pigmentation
T3268 266-268 IN denotes in
T3267 259-265 RB denotes solely
T3266 249-258 NNS denotes functions
T3265 244-248 NN denotes gene
T3264 242-243 NN denotes p
T3263 238-241 DT denotes the
T3262 230-237 IN denotes Because
T3261 228-229 . denotes .
T3260 227-228 NNP denotes ]
T3259 225-227 CD denotes 14
T3258 224-225 NNP denotes [
T3257 222-223 -RRB- denotes )
T3256 211-222 NNS denotes breakpoints
T3255 199-210 JJ denotes chromosomal
T3254 195-198 DT denotes the
T3253 192-194 IN denotes of
T3252 180-191 NNS denotes nucleotides
T3251 173-179 CD denotes 50,000
T3250 166-172 IN denotes within
T3249 161-165 NN denotes gene
T3248 155-160 JJ denotes other
R2189 T3216 T3217 nummod 2,wk
R2193 T3217 T3215 pobj wk,within
R2195 T3219 T3218 pobj birth,after
R2197 T3220 T3222 nmod [,]
R2198 T3221 T3222 nummod 14,]
R2202 T3224 T3227 det The,allele
R2204 T3225 T3227 amod p100H,allele
R2205 T3226 T3227 amod mutant,allele
R2206 T3227 T3229 nsubjpass allele,associated
R2208 T3228 T3229 auxpass is,associated
R2209 T3229 T3229 ROOT associated,associated
R2211 T3230 T3229 prep with,associated
R2212 T3231 T3234 det a,inversion
R2213 T3232 T3234 nmod Chromosome,inversion
R2214 T3233 T3232 nummod 7,Chromosome
R2215 T3234 T3230 pobj inversion,with
R2216 T3235 T3236 nsubj that,disrupts
R2218 T3236 T3234 relcl disrupts,inversion
R2219 T3237 T3240 preconj both,gene
R2220 T3238 T3240 det the,gene
R2222 T3239 T3240 compound p,gene
R2223 T3240 T3236 dobj gene,disrupts
R2224 T3241 T3240 cc and,gene
R2226 T3242 T3244 det the,gene
R2227 T3243 T3244 compound Sox6,gene
R2228 T3244 T3240 conj gene,gene
R2230 T3245 T3244 punct (,gene
R2231 T3246 T3244 cc and,gene
R2232 T3247 T3249 det no,gene
R2234 T3248 T3249 amod other,gene
R2235 T3249 T3244 conj gene,gene
R2236 T3250 T3249 prep within,gene
R2238 T3251 T3252 nummod "50,000",nucleotides
R2239 T3252 T3250 pobj nucleotides,within
R2241 T3253 T3252 prep of,nucleotides
R2242 T3254 T3256 det the,breakpoints
R2243 T3255 T3256 amod chromosomal,breakpoints
R2245 T3256 T3253 pobj breakpoints,of
R2246 T3257 T3229 punct ),associated
R2248 T3258 T3260 nmod [,]
R2249 T3259 T3260 nummod 14,]
R2250 T3260 T3260 ROOT ],]
R2251 T3261 T3260 punct .,]
R2254 T3263 T3266 det the,functions
R2256 T3264 T3265 compound p,gene
R2257 T3265 T3266 compound gene,functions
R2260 T3267 T3268 advmod solely,in
R2261 T3268 T3266 prep in,functions
R2263 T3269 T3268 pobj pigmentation,in
R2265 T3270 T3272 nmod [,]
R2266 T3271 T3272 nummod 16,]
R2267 T3272 T3266 appos ],functions

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1528 242-248 Protein denotes p gene
T1527 104-112 Positive_regulation denotes disrupts
T1526 137-146 Protein denotes Sox6 gene
T1525 35-40 Protein denotes p100H
R764 T1526 T1527 themeOf Sox6 gene,disrupts

testone

Id Subject Object Predicate Lexical cue
T1035 104-112 Negative_regulation denotes disrupts
T992 292-296 Protein denotes Sox6
T991 242-243 Protein denotes p
T990 137-141 Protein denotes Sox6
T989 122-123 Protein denotes p
R602 T989 T1035 themeOf p,disrupts
R603 T990 T1035 themeOf Sox6,disrupts

test3

Id Subject Object Predicate Lexical cue
T1137 292-296 Protein denotes Sox6
T1136 242-243 Protein denotes p
T1135 137-141 Protein denotes Sox6
T1134 122-123 Protein denotes p
T1080 292-296 Protein denotes Sox6
T1079 242-243 Protein denotes p
T1078 137-141 Protein denotes Sox6
T1077 122-123 Protein denotes p