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PMC:1359074 / 433-679 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T353 236-240 NN denotes pair
T352 228-235 NN denotes 36–base
T351 226-227 DT denotes a
T350 219-225 VB denotes define
T349 213-218 NN denotes cells
T348 211-212 -RRB- denotes )
T347 196-211 JJ denotes erythroleukemic
T346 195-196 -LRB- denotes (
T345 189-194 NN denotes GM979
T344 186-188 IN denotes in
T343 179-185 NN denotes assays
T342 166-178 NN denotes Transfection
T341 153-164 NN denotes circulation
T340 147-152 JJ denotes fetal
T339 143-146 DT denotes the
T338 140-142 IN denotes in
T337 132-139 JJ denotes present
T336 128-131 VB denotes are
T335 122-127 NN denotes cells
T334 118-121 JJ denotes red
T333 108-117 JJ denotes nucleated
T332 105-107 IN denotes of
T331 97-104 NN denotes numbers
T330 87-96 VB denotes increased
T329 83-86 CC denotes and
T328 81-82 -COMMA- denotes ,
T327 72-81 VB denotes expressed
T326 59-71 RB denotes persistently
T325 56-58 VB denotes is
T324 49-55 NN denotes globin
T323 46-48 JJ denotes ɛy
T322 44-45 -COMMA- denotes ,
T321 39-44 NN denotes p100H
T320 37-38 -COMMA- denotes ,
T319 32-37 NN denotes mouse
T318 17-31 JJ denotes Sox6-deficient
T317 13-16 DT denotes the
T316 10-12 IN denotes In
T315 2-8 NN denotes muscle
R108 T319 T316 arg2Of mouse,In
R109 T319 T317 arg1Of mouse,the
R110 T319 T318 arg1Of mouse,Sox6-deficient
R111 T319 T320 arg1Of mouse,","
R112 T321 T320 arg2Of p100H,","
R113 T324 T323 arg1Of globin,ɛy
R114 T324 T325 arg1Of globin,is
R115 T324 T327 arg2Of globin,expressed
R116 T327 T325 arg2Of expressed,is
R117 T327 T326 arg1Of expressed,persistently
R118 T327 T329 arg1Of expressed,and
R119 T329 T316 arg1Of and,In
R120 T329 T322 arg1Of and,","
R121 T329 T328 arg1Of and,","
R122 T331 T330 arg2Of numbers,increased
R123 T331 T332 arg1Of numbers,of
R124 T331 T336 arg1Of numbers,are
R125 T331 T337 arg1Of numbers,present
R126 T335 T332 arg2Of cells,of
R127 T335 T333 arg1Of cells,nucleated
R128 T335 T334 arg1Of cells,red
R129 T336 T329 arg2Of are,and
R130 T337 T336 arg2Of present,are
R131 T337 T338 arg1Of present,in
R132 T341 T338 arg2Of circulation,in
R133 T341 T339 arg1Of circulation,the
R134 T341 T340 arg1Of circulation,fetal
R135 T343 T342 arg1Of assays,Transfection
R136 T343 T344 arg1Of assays,in
R137 T343 T350 arg1Of assays,define
R138 T347 T346 arg2Of erythroleukemic,(
R139 T348 T346 arg3Of ),(
R140 T349 T344 arg2Of cells,in
R141 T349 T345 arg1Of cells,GM979
R142 T349 T346 arg1Of cells,(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T151 17-21 Protein denotes Sox6
T152 46-55 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T476 17-21 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T101 49-55 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T166 49-55 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T174 122-127 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T175 213-218 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T94 10-165 Sentence denotes In the Sox6-deficient mouse, p100H, ɛy globin is persistently expressed, and increased numbers of nucleated red cells are present in the fetal circulation.
T6 10-165 Sentence denotes In the Sox6-deficient mouse, p100H, ɛy globin is persistently expressed, and increased numbers of nucleated red cells are present in the fetal circulation.

simple1

Id Subject Object Predicate Lexical cue
T237 46-55 Protein denotes ɛy globin
T236 17-21 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T881 17-21 Protein denotes Sox6
T882 46-55 Protein denotes ɛy globin
T896 72-81 Gene_expression denotes expressed
T897 22-31 Negative_regulation denotes deficient
R586 T881 T897 themeOf Sox6,deficient
R587 T882 T896 themeOf ɛy globin,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T489 17-21 Protein denotes Sox6
T490 46-55 Protein denotes ɛy globin
T505 22-31 Negative_regulation denotes deficient
T506 72-81 Gene_expression denotes expressed
R447 T489 T505 themeOf Sox6,deficient
R448 T490 T506 themeOf ɛy globin,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T520 17-21 Protein denotes Sox6
T521 46-55 Protein denotes ɛy globin
T536 22-31 Negative_regulation denotes deficient
T537 72-81 Gene_expression denotes expressed
R463 T520 T536 themeOf Sox6,deficient
R464 T521 T537 themeOf ɛy globin,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T871 46-81 Gene_expression denotes ɛy globin is persistently expressed
T839 213-218 Entity denotes cells
T850 39-44 Entity denotes p100H
T853 46-55 Protein denotes ɛy globin
R580 T853 T871 themeOf ɛy globin,ɛy globin is persistently expressed

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T680 236-240 NN denotes pair
T679 231-235 JJ denotes base
T678 228-230 CD denotes 36
T677 226-227 DT denotes a
T676 219-225 VBP denotes define
T675 213-218 NNS denotes cells
T674 211-212 -RRB- denotes )
T673 196-211 JJ denotes erythroleukemic
T672 195-196 -LRB- denotes (
T671 189-194 NNP denotes GM979
T670 186-188 IN denotes in
T669 179-185 NNS denotes assays
T668 166-178 NNP denotes Transfection
T667 164-165 . denotes .
T666 153-164 NN denotes circulation
T665 147-152 JJ denotes fetal
T664 143-146 DT denotes the
T663 140-142 IN denotes in
T662 132-139 JJ denotes present
T661 128-131 VBP denotes are
T660 122-127 NNS denotes cells
T659 118-121 JJ denotes red
T658 108-117 JJ denotes nucleated
T657 105-107 IN denotes of
T656 97-104 NNS denotes numbers
T655 87-96 VBD denotes increased
T654 83-86 CC denotes and
T653 81-82 , denotes ,
T652 72-81 VBN denotes expressed
T651 59-71 RB denotes persistently
T650 56-58 VBZ denotes is
T649 49-55 NN denotes globin
T648 46-48 JJ denotes ɛy
T647 44-45 , denotes ,
T646 39-44 NNP denotes p100H
T645 37-38 , denotes ,
T644 32-37 NN denotes mouse
T643 17-31 JJ denotes Sox6-deficient
T642 13-16 DT denotes the
T641 10-12 IN denotes In
T640 8-9 . denotes .
T639 2-8 NN denotes muscle
R337 T641 T652 prep In,expressed
R338 T642 T644 det the,mouse
R339 T643 T644 amod Sox6-deficient,mouse
R340 T644 T641 pobj mouse,In
R341 T645 T652 punct ",",expressed
R342 T646 T652 nsubjpass p100H,expressed
R343 T647 T652 punct ",",expressed
R344 T648 T649 amod ɛy,globin
R345 T649 T652 nsubjpass globin,expressed
R346 T650 T652 auxpass is,expressed
R347 T651 T652 advmod persistently,expressed
R348 T652 T652 ROOT expressed,expressed
R349 T653 T652 punct ",",expressed
R350 T654 T652 cc and,expressed
R351 T655 T656 amod increased,numbers
R352 T656 T661 nsubj numbers,are
R353 T657 T656 prep of,numbers
R354 T658 T660 amod nucleated,cells
R355 T659 T660 amod red,cells
R356 T660 T657 pobj cells,of
R357 T661 T652 conj are,expressed
R358 T662 T661 acomp present,are
R359 T663 T662 prep in,present
R360 T664 T666 det the,circulation
R361 T665 T666 amod fetal,circulation
R362 T666 T663 pobj circulation,in
R363 T667 T661 punct .,are
R364 T668 T669 compound Transfection,assays
R365 T669 T676 nsubj assays,define
R366 T670 T669 prep in,assays
R367 T671 T670 pobj GM979,in
R368 T672 T673 punct (,erythroleukemic
R369 T673 T671 appos erythroleukemic,GM979
R370 T674 T673 punct ),erythroleukemic
R371 T675 T676 nsubj cells,define
R372 T676 T676 ROOT define,define

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T214 72-81 Gene_expression denotes expressed
T213 72-81 Gene_expression denotes expressed
T212 22-31 Negative_regulation denotes deficient
T211 46-55 Protein denotes ɛy globin
T210 39-44 Protein denotes p100H
T209 17-21 Protein denotes Sox6
R33 T209 T212 themeOf Sox6,deficient
R34 T210 T213 themeOf p100H,expressed
R35 T211 T214 themeOf ɛy globin,expressed

testone

Id Subject Object Predicate Lexical cue
T25 17-21 Protein denotes Sox6
T26 46-55 Protein denotes ɛy globin
T40 22-31 Negative_regulation denotes deficient
T41 72-81 Gene_expression denotes expressed
R2 T25 T40 themeOf Sox6,deficient
R3 T26 T41 themeOf ɛy globin,expressed

test3

Id Subject Object Predicate Lexical cue
T50 17-21 Protein denotes Sox6
T51 46-55 Protein denotes ɛy globin
T70 17-21 Protein denotes Sox6
T71 46-55 Protein denotes ɛy globin
T72 72-81 Gene_expression denotes expressed
R12 T71 T72 themeOf ɛy globin,expressed