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2_test

Id Subject Object Predicate Lexical cue
16462943-15302897-85761030 25-27 15302897 denotes 53
T20377 25-27 15302897 denotes 53

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20665 1483-1486 NN denotes min
T20664 1481-1482 CD denotes 5
T20663 1477-1480 IN denotes for
T20662 1474-1476 NN denotes °C
T20661 1471-1473 CD denotes 72
T20660 1468-1470 IN denotes at
T20659 1458-1467 NN denotes extension
T20658 1452-1457 JJ denotes final
T20657 1450-1451 DT denotes a
T20656 1445-1449 IN denotes with
T20655 1438-1444 VB denotes ending
T20654 1436-1437 -COMMA- denotes ,
T20653 1435-1436 NN denotes s
T20652 1432-1434 CD denotes 45
T20651 1428-1431 IN denotes for
T20650 1425-1427 NN denotes °C
T20649 1422-1424 CD denotes 72
T20648 1418-1421 CC denotes and
T20647 1416-1417 -COMMA- denotes ,
T20646 1415-1416 NN denotes s
T20645 1412-1414 CD denotes 30
T20644 1408-1411 IN denotes for
T20643 1405-1407 NN denotes °C
T20642 1402-1404 CD denotes 60
T20641 1400-1401 -COMMA- denotes ,
T20640 1399-1400 NN denotes s
T20639 1396-1398 CD denotes 30
T20638 1392-1395 IN denotes for
T20637 1389-1391 NN denotes °C
T20636 1386-1388 CD denotes 95
T20635 1383-1385 IN denotes at
T20634 1376-1382 NN denotes cycles
T20633 1373-1375 CD denotes 30
T20632 1370-1372 IN denotes by
T20631 1361-1369 VB denotes followed
T20630 1357-1360 NN denotes min
T20629 1354-1356 CD denotes 15
T20628 1350-1353 IN denotes for
T20627 1347-1349 NN denotes °C
T20626 1344-1346 CD denotes 95
T20625 1342-1343 -COLON- denotes :
T20624 1332-1342 NN denotes conditions
T20623 1322-1331 JJ denotes following
T20622 1318-1321 DT denotes the
T20621 1312-1317 IN denotes under
T20620 1302-1311 VB denotes performed
T20619 1298-1301 VB denotes was
T20618 1294-1297 NN denotes PCR
T20617 1291-1292 -RRB- denotes )
T20616 1267-1291 NN denotes 5′GCTTCACCACCAACCTCTTC3′
T20615 1265-1266 -COMMA- denotes ,
T20614 1258-1265 NN denotes MHB1689
T20613 1254-1257 CC denotes and
T20612 1252-1253 -COLON- denotes ;
T20611 1228-1252 NN denotes 5′CGAAGAATAAAAGGCCACCA3′
T20610 1226-1227 -COMMA- denotes ,
T20609 1219-1226 NN denotes MHB1688
T20608 1211-1218 NN denotes primers
T20607 1210-1211 -LRB- denotes (
T20606 1201-1209 NN denotes promoter
T20605 1198-1200 JJ denotes ɛy
T20604 1194-1197 DT denotes the
T20603 1191-1193 IN denotes of
T20602 1186-1190 CD denotes +140
T20601 1183-1185 TO denotes to
T20600 1179-1182 CD denotes −31
T20599 1167-1178 NN denotes nucleotides
T20598 1164-1166 TO denotes to
T20597 1150-1163 VB denotes corresponding
T20596 1148-1149 -COMMA- denotes ,
T20595 1140-1148 NN denotes amplicon
T20594 1133-1139 JJ denotes 172-bp
T20593 1131-1132 DT denotes a
T20592 1123-1130 VB denotes yielded
T20591 1119-1122 CC denotes and
T20590 1109-1118 VB denotes performed
T20589 1105-1108 VB denotes was
T20588 1096-1104 NN denotes promoter
T20587 1093-1095 JJ denotes ɛy
T20586 1089-1092 DT denotes the
T20585 1086-1088 IN denotes of
T20584 1072-1085 NN denotes amplification
T20583 1068-1071 NN denotes PCR
T20582 1058-1066 NN denotes reaction
T20581 1054-1057 NN denotes PCR
T20580 1050-1053 DT denotes the
T20579 1047-1049 IN denotes in
T20578 1038-1046 NN denotes template
T20577 1036-1037 DT denotes a
T20576 1033-1035 IN denotes as
T20575 1028-1032 VB denotes used
T20574 1024-1027 VB denotes was
T20573 1020-1023 NN denotes DNA
T20572 1001-1019 VB denotes immunoprecipitated
T20571 998-1000 CC denotes or
T20570 994-997 NN denotes DNA
T20569 988-993 NN denotes Input
T20568 985-986 NN denotes h
T20567 983-984 CD denotes 4
T20566 979-982 IN denotes for
T20565 976-978 NN denotes °C
T20564 973-975 CD denotes 65
T20563 970-972 IN denotes at
T20562 965-969 NN denotes NaCl
T20561 963-964 NN denotes M
T20560 961-962 CD denotes 5
T20559 956-960 IN denotes with
T20558 947-955 VB denotes reversed
T20557 942-946 VB denotes were
T20556 930-941 NN denotes cross-links
T20555 922-929 NN denotes protein
T20554 918-921 NN denotes DNA
T20553 914-917 DT denotes the
T20552 910-913 CC denotes and
T20551 908-909 -COMMA- denotes ,
T20550 902-908 VB denotes eluted
T20549 897-901 VB denotes were
T20548 887-896 NN denotes complexes
T20547 868-886 NN denotes chromatin-antibody
T20546 864-867 DT denotes The
T20545 854-862 NN denotes controls
T20544 845-853 JJ denotes negative
T20543 842-844 IN denotes as
T20542 837-841 VB denotes used
T20541 832-836 VB denotes were
T20540 828-831 CD denotes two
T20539 823-827 JJ denotes last
T20538 819-822 DT denotes The
T20537 815-818 NNP denotes Ab.
T20536 807-814 IN denotes without
T20535 800-806 NN denotes sample
T20534 794-799 JJ denotes third
T20533 790-793 DT denotes the
T20532 786-789 CC denotes and
T20531 784-785 -COMMA- denotes ,
T20530 781-784 NN denotes IgG
T20529 774-780 NN denotes rabbit
T20528 767-773 JJ denotes normal
T20527 762-766 IN denotes with
T20526 754-761 VB denotes treated
T20525 747-753 JJ denotes second
T20524 745-746 DT denotes a
T20523 743-744 -COMMA- denotes ,
T20522 734-743 NN denotes anti-Sox6
T20521 729-733 IN denotes with
T20520 721-728 VB denotes treated
T20519 714-720 NN denotes sample
T20518 710-713 CD denotes one
T20517 708-709 -COLON- denotes :
T20516 702-708 NN denotes thirds
T20515 697-701 IN denotes into
T20514 691-696 VB denotes split
T20513 686-690 VB denotes were
T20512 678-685 NN denotes samples
T20511 674-677 DT denotes the
T20510 672-673 -COMMA- denotes ,
T20509 661-672 NN denotes preclearing
T20508 651-660 VB denotes Following
T20507 648-649 -RRB- denotes )
T20506 642-648 NNP denotes States
T20505 635-641 NNP denotes United
T20504 633-634 -COMMA- denotes ,
T20503 627-633 NNP denotes Jersey
T20502 623-626 NNP denotes New
T20501 621-622 -COMMA- denotes ,
T20500 611-621 NNP denotes Piscataway
T20499 609-610 -COMMA- denotes ,
T20498 598-609 NNP denotes Biosciences
T20497 589-597 NNP denotes Amersham
T20496 588-589 -LRB- denotes (
T20495 576-587 NN denotes A-Sepharose
T20494 568-575 NN denotes protein
T20493 563-567 IN denotes with
T20492 552-562 VB denotes precleared
T20491 548-551 VB denotes was
T20490 541-547 NN denotes sample
T20489 531-540 VB denotes remaining
T20488 527-530 DT denotes the
T20487 523-526 CC denotes and
T20486 521-522 -COMMA- denotes ,
T20485 514-521 NN denotes control
T20484 508-513 NN denotes input
T20483 504-507 IN denotes for
T20482 498-503 RB denotes aside
T20481 494-497 VB denotes set
T20480 490-493 VB denotes was
T20479 483-489 NN denotes sample
T20478 479-482 DT denotes the
T20477 476-478 IN denotes of
T20476 466-475 NN denotes One-tenth
T20475 462-464 NN denotes bp
T20474 458-461 CD denotes 600
T20473 454-457 CC denotes and
T20472 450-453 CD denotes 200
T20471 447-449 TO denotes to
T20470 437-446 VB denotes sonicated
T20469 432-436 VB denotes were
T20468 422-431 NN denotes complexes
T20467 410-421 JJ denotes DNA-protein
T20466 405-408 NN denotes min
T20465 402-404 CD denotes 10
T20464 398-401 IN denotes for
T20463 394-397 NN denotes ice
T20462 391-393 IN denotes on
T20461 381-390 VB denotes incubated
T20460 377-380 CC denotes and
T20459 375-376 -COMMA- denotes ,
T20458 365-375 NN denotes inhibitors
T20457 356-364 NN denotes protease
T20456 345-355 VB denotes containing
T20455 338-344 NN denotes buffer
T20454 332-337 NN denotes lysis
T20453 328-331 NN denotes SDS
T20452 326-327 DT denotes a
T20451 323-325 IN denotes in
T20450 311-322 VB denotes resuspended
T20449 309-310 -COMMA- denotes ,
T20448 307-309 NN denotes °C
T20447 305-306 CD denotes 4
T20446 302-304 IN denotes at
T20445 287-301 NN denotes centrifugation
T20444 284-286 IN denotes by
T20443 274-283 VB denotes collected
T20442 272-273 -COMMA- denotes ,
T20441 262-272 NN denotes inhibitors
T20440 253-261 NN denotes protease
T20439 242-252 VB denotes containing
T20438 237-241 NN denotes EDTA
T20437 235-236 NN denotes %
T20436 232-235 CD denotes 0.1
T20435 227-231 IN denotes with
T20434 218-226 NN denotes solution
T20433 213-217 NN denotes salt
T20432 204-212 JJ denotes balanced
T20431 202-203 POS denotes '
T20430 197-202 NNP denotes Hanks
T20429 194-196 CD denotes 1×
T20428 185-193 JJ denotes ice-cold
T20427 182-184 IN denotes in
T20426 175-181 VB denotes rinsed
T20425 173-174 -COMMA- denotes ,
T20424 171-173 NN denotes °C
T20423 168-170 CD denotes 37
T20422 165-167 IN denotes at
T20421 161-164 NN denotes min
T20420 158-160 CD denotes 10
T20419 154-157 IN denotes for
T20418 141-153 NN denotes formaldehyde
T20417 139-140 NN denotes %
T20416 138-139 CD denotes 1
T20415 133-137 IN denotes with
T20414 125-132 VB denotes treated
T20413 120-124 VB denotes were
T20412 115-119 NN denotes mice
T20411 112-114 JJ denotes WT
T20410 103-111 JJ denotes 15.5-dpc
T20409 97-102 CD denotes three
T20408 92-96 IN denotes from
T20407 86-91 NN denotes cells
T20406 80-85 NN denotes liver
T20405 74-79 JJ denotes fetal
T20404 71-73 CC denotes or
T20403 69-70 -RRB- denotes )
T20402 66-69 CD denotes 107
T20401 64-65 NN denotes ×
T20400 62-63 CD denotes 4
T20399 61-62 -LRB- denotes (
T20398 55-60 NN denotes cells
T20397 51-54 NN denotes MEL
T20396 46-50 IN denotes from
T20395 40-45 NN denotes Cells
T20394 38-39 -COLON- denotes :
T20393 33-38 NN denotes brief
T20392 30-32 IN denotes in
T20391 28-29 -COMMA- denotes ,
T20390 27-28 -RRB- denotes ]
T20389 25-27 CD denotes 53
T20388 24-25 -LRB- denotes [
T20387 16-23 NNP denotes Nouzova
T20386 13-15 IN denotes by
T20385 3-12 VB denotes described
T20384 0-2 IN denotes As
R14489 T20385 T20384 arg2Of described,As
R14490 T20387 T20385 arg1Of Nouzova,described
R14491 T20387 T20386 arg2Of Nouzova,by
R14492 T20387 T20388 arg1Of Nouzova,[
R14493 T20387 T20391 arg1Of Nouzova,","
R14494 T20387 T20392 arg1Of Nouzova,in
R14495 T20387 T20394 arg1Of Nouzova,:
R14496 T20389 T20388 arg2Of 53,[
R14497 T20390 T20388 arg3Of ],[
R14498 T20393 T20392 arg2Of brief,in
R14499 T20395 T20396 arg1Of Cells,from
R14500 T20395 T20413 arg1Of Cells,were
R14501 T20395 T20414 arg2Of Cells,treated
R14502 T20398 T20397 arg1Of cells,MEL
R14503 T20398 T20399 arg1Of cells,(
R14504 T20398 T20404 arg1Of cells,or
R14505 T20401 T20399 arg2Of ×,(
R14506 T20401 T20400 arg1Of ×,4
R14507 T20401 T20402 arg1Of ×,107
R14508 T20403 T20399 arg3Of ),(
R14509 T20404 T20396 arg2Of or,from
R14510 T20407 T20404 arg2Of cells,or
R14511 T20407 T20405 arg1Of cells,fetal
R14512 T20407 T20406 arg1Of cells,liver
R14513 T20407 T20408 arg1Of cells,from
R14514 T20412 T20408 arg2Of mice,from
R14515 T20412 T20409 arg1Of mice,three
R14516 T20412 T20410 arg1Of mice,15.5-dpc
R14517 T20412 T20411 arg1Of mice,WT
R14518 T20414 T20413 arg2Of treated,were
R14519 T20414 T20415 arg1Of treated,with
R14520 T20416 T20417 arg1Of 1,%
R14521 T20418 T20415 arg2Of formaldehyde,with
R14522 T20418 T20416 arg1Of formaldehyde,1
R14523 T20418 T20419 arg1Of formaldehyde,for
R14524 T20421 T20419 arg2Of min,for
R14525 T20421 T20420 arg1Of min,10
R14526 T20421 T20422 arg1Of min,at
R14527 T20421 T20425 arg1Of min,","
R14528 T20421 T20426 arg2Of min,rinsed
R14529 T20421 T20435 arg1Of min,with
R14530 T20424 T20422 arg2Of °C,at
R14531 T20424 T20423 arg1Of °C,37
R14532 T20426 T20427 arg1Of rinsed,in
R14533 T20430 T20431 arg2Of Hanks,'
R14534 T20434 T20427 arg2Of solution,in
R14535 T20434 T20428 arg1Of solution,ice-cold
R14536 T20434 T20429 arg1Of solution,1×
R14537 T20434 T20431 arg1Of solution,'
R14538 T20434 T20432 arg1Of solution,balanced
R14539 T20434 T20433 arg1Of solution,salt
R14540 T20436 T20437 arg1Of 0.1,%
R14541 T20438 T20435 arg2Of EDTA,with
R14542 T20438 T20436 arg1Of EDTA,0.1
R14543 T20438 T20439 arg1Of EDTA,containing
R14544 T20441 T20439 arg2Of inhibitors,containing
R14545 T20441 T20440 arg1Of inhibitors,protease
R14546 T20441 T20442 arg1Of inhibitors,","
R14547 T20441 T20443 arg2Of inhibitors,collected
R14548 T20441 T20450 arg2Of inhibitors,resuspended
R14549 T20441 T20461 arg2Of inhibitors,incubated
R14550 T20445 T20443 arg1Of centrifugation,collected
R14551 T20445 T20444 arg2Of centrifugation,by
R14552 T20445 T20446 arg1Of centrifugation,at
R14553 T20448 T20446 arg2Of °C,at
R14554 T20448 T20447 arg1Of °C,4
R14555 T20450 T20451 arg1Of resuspended,in
R14556 T20450 T20460 arg1Of resuspended,and
R14557 T20455 T20451 arg2Of buffer,in
R14558 T20455 T20452 arg1Of buffer,a
R14559 T20455 T20453 arg1Of buffer,SDS
R14560 T20455 T20454 arg1Of buffer,lysis
R14561 T20455 T20456 arg1Of buffer,containing
R14562 T20458 T20456 arg2Of inhibitors,containing
R14563 T20458 T20457 arg1Of inhibitors,protease
R14564 T20460 T20449 arg1Of and,","
R14565 T20460 T20459 arg1Of and,","
R14566 T20461 T20460 arg2Of incubated,and
R14567 T20461 T20462 arg1Of incubated,on
R14568 T20461 T20464 arg1Of incubated,for
R14569 T20463 T20462 arg2Of ice,on
R14570 T20466 T20464 arg2Of min,for
R14571 T20466 T20465 arg1Of min,10
R14572 T20468 T20467 arg1Of complexes,DNA-protein
R14573 T20468 T20469 arg1Of complexes,were
R14574 T20468 T20470 arg2Of complexes,sonicated
R14575 T20470 T20469 arg2Of sonicated,were
R14576 T20470 T20471 arg1Of sonicated,to
R14577 T20472 T20473 arg1Of 200,and
R14578 T20474 T20473 arg2Of 600,and
R14579 T20475 T20471 arg2Of bp,to
R14580 T20475 T20472 arg1Of bp,200
R14581 T20475 T20474 arg1Of bp,600
R14582 T20476 T20477 arg1Of One-tenth,of
R14583 T20476 T20480 arg1Of One-tenth,was
R14584 T20476 T20481 arg2Of One-tenth,set
R14585 T20479 T20477 arg2Of sample,of
R14586 T20479 T20478 arg1Of sample,the
R14587 T20481 T20480 arg2Of set,was
R14588 T20481 T20482 arg1Of set,aside
R14589 T20481 T20483 arg1Of set,for
R14590 T20481 T20487 arg1Of set,and
R14591 T20485 T20483 arg2Of control,for
R14592 T20485 T20484 arg1Of control,input
R14593 T20487 T20486 arg1Of and,","
R14594 T20487 T20496 arg1Of and,(
R14595 T20490 T20488 arg1Of sample,the
R14596 T20490 T20489 arg1Of sample,remaining
R14597 T20490 T20491 arg1Of sample,was
R14598 T20490 T20492 arg2Of sample,precleared
R14599 T20492 T20487 arg2Of precleared,and
R14600 T20492 T20491 arg2Of precleared,was
R14601 T20492 T20493 arg1Of precleared,with
R14602 T20495 T20493 arg2Of A-Sepharose,with
R14603 T20495 T20494 arg1Of A-Sepharose,protein
R14604 T20498 T20497 arg1Of Biosciences,Amersham
R14605 T20498 T20499 arg1Of Biosciences,","
R14606 T20499 T20501 arg1Of ",",","
R14607 T20500 T20499 arg2Of Piscataway,","
R14608 T20501 T20504 arg1Of ",",","
R14609 T20503 T20501 arg2Of Jersey,","
R14610 T20503 T20502 arg1Of Jersey,New
R14611 T20504 T20496 arg2Of ",",(
R14612 T20506 T20504 arg2Of States,","
R14613 T20506 T20505 arg1Of States,United
R14614 T20507 T20496 arg3Of ),(
R14615 T20509 T20508 arg2Of preclearing,Following
R14616 T20512 T20511 arg1Of samples,the
R14617 T20512 T20513 arg1Of samples,were
R14618 T20512 T20514 arg2Of samples,split
R14619 T20514 T20513 arg2Of split,were
R14620 T20514 T20515 arg1Of split,into
R14621 T20514 T20532 arg1Of split,and
R14622 T20516 T20515 arg2Of thirds,into
R14623 T20516 T20517 arg1Of thirds,:
R14624 T20519 T20517 arg2Of sample,:
R14625 T20519 T20518 arg1Of sample,one
R14626 T20519 T20520 arg2Of sample,treated
R14627 T20520 T20521 arg1Of treated,with
R14628 T20522 T20521 arg2Of anti-Sox6,with
R14629 T20522 T20523 arg1Of anti-Sox6,","
R14630 T20525 T20523 arg2Of second,","
R14631 T20525 T20524 arg1Of second,a
R14632 T20525 T20526 arg2Of second,treated
R14633 T20526 T20527 arg1Of treated,with
R14634 T20530 T20527 arg2Of IgG,with
R14635 T20530 T20528 arg1Of IgG,normal
R14636 T20530 T20529 arg1Of IgG,rabbit
R14637 T20532 T20508 arg1Of and,Following
R14638 T20532 T20510 arg1Of and,","
R14639 T20532 T20531 arg1Of and,","
R14640 T20535 T20533 arg1Of sample,the
R14641 T20535 T20534 arg1Of sample,third
R14642 T20535 T20536 arg1Of sample,without
R14643 T20535 T20541 arg1Of sample,were
R14644 T20535 T20542 arg2Of sample,used
R14645 T20540 T20536 arg2Of two,without
R14646 T20540 T20537 arg1Of two,Ab.
R14647 T20540 T20538 arg1Of two,The
R14648 T20540 T20539 arg1Of two,last
R14649 T20542 T20532 arg2Of used,and
R14650 T20542 T20541 arg2Of used,were
R14651 T20542 T20543 arg1Of used,as
R14652 T20545 T20543 arg2Of controls,as
R14653 T20545 T20544 arg1Of controls,negative
R14654 T20548 T20546 arg1Of complexes,The
R14655 T20548 T20547 arg1Of complexes,chromatin-antibody
R14656 T20548 T20549 arg1Of complexes,were
R14657 T20548 T20550 arg2Of complexes,eluted
R14658 T20550 T20549 arg2Of eluted,were
R14659 T20550 T20552 arg1Of eluted,and
R14660 T20552 T20551 arg1Of and,","
R14661 T20556 T20553 arg1Of cross-links,the
R14662 T20556 T20554 arg1Of cross-links,DNA
R14663 T20556 T20555 arg1Of cross-links,protein
R14664 T20556 T20557 arg1Of cross-links,were
R14665 T20556 T20558 arg2Of cross-links,reversed
R14666 T20558 T20552 arg2Of reversed,and
R14667 T20558 T20557 arg2Of reversed,were
R14668 T20558 T20559 arg1Of reversed,with
R14669 T20558 T20563 arg1Of reversed,at
R14670 T20560 T20561 arg1Of 5,M
R14671 T20562 T20559 arg2Of NaCl,with
R14672 T20562 T20560 arg1Of NaCl,5
R14673 T20565 T20563 arg2Of °C,at
R14674 T20565 T20564 arg1Of °C,65
R14675 T20565 T20566 arg1Of °C,for
R14676 T20568 T20566 arg2Of h,for
R14677 T20568 T20567 arg1Of h,4
R14678 T20570 T20569 arg1Of DNA,Input
R14679 T20570 T20571 arg1Of DNA,or
R14680 T20571 T20574 arg1Of or,was
R14681 T20571 T20575 arg2Of or,used
R14682 T20573 T20571 arg2Of DNA,or
R14683 T20573 T20572 arg2Of DNA,immunoprecipitated
R14684 T20575 T20574 arg2Of used,was
R14685 T20575 T20576 arg1Of used,as
R14686 T20578 T20576 arg2Of template,as
R14687 T20578 T20577 arg1Of template,a
R14688 T20578 T20579 arg1Of template,in
R14689 T20582 T20579 arg2Of reaction,in
R14690 T20582 T20580 arg1Of reaction,the
R14691 T20582 T20581 arg1Of reaction,PCR
R14692 T20584 T20583 arg1Of amplification,PCR
R14693 T20584 T20585 arg1Of amplification,of
R14694 T20584 T20589 arg1Of amplification,was
R14695 T20584 T20590 arg2Of amplification,performed
R14696 T20584 T20592 arg1Of amplification,yielded
R14697 T20588 T20585 arg2Of promoter,of
R14698 T20588 T20586 arg1Of promoter,the
R14699 T20588 T20587 arg1Of promoter,ɛy
R14700 T20590 T20589 arg2Of performed,was
R14701 T20590 T20591 arg1Of performed,and
R14702 T20591 T20596 arg1Of and,","
R14703 T20591 T20597 arg1Of and,corresponding
R14704 T20592 T20591 arg2Of yielded,and
R14705 T20595 T20592 arg2Of amplicon,yielded
R14706 T20595 T20593 arg1Of amplicon,a
R14707 T20595 T20594 arg1Of amplicon,172-bp
R14708 T20598 T20597 arg2Of to,corresponding
R14709 T20599 T20598 arg2Of nucleotides,to
R14710 T20599 T20600 arg1Of nucleotides,−31
R14711 T20600 T20601 arg1Of −31,to
R14712 T20602 T20601 arg2Of +140,to
R14713 T20602 T20603 arg1Of +140,of
R14714 T20602 T20607 arg1Of +140,(
R14715 T20606 T20603 arg2Of promoter,of
R14716 T20606 T20604 arg1Of promoter,the
R14717 T20606 T20605 arg1Of promoter,ɛy
R14718 T20609 T20610 arg1Of MHB1688,","
R14719 T20610 T20613 arg1Of ",",and
R14720 T20611 T20610 arg2Of 5′CGAAGAATAAAAGGCCACCA3′,","
R14721 T20613 T20607 arg2Of and,(
R14722 T20613 T20608 arg1Of and,primers
R14723 T20613 T20612 arg1Of and,;
R14724 T20613 T20615 arg1Of and,","
R14725 T20614 T20613 arg2Of MHB1689,and
R14726 T20616 T20615 arg2Of 5′GCTTCACCACCAACCTCTTC3′,","
R14727 T20617 T20607 arg3Of ),(
R14728 T20618 T20619 arg1Of PCR,was
R14729 T20618 T20620 arg2Of PCR,performed
R14730 T20620 T20619 arg2Of performed,was
R14731 T20620 T20621 arg1Of performed,under
R14732 T20620 T20625 arg1Of performed,:
R14733 T20624 T20621 arg2Of conditions,under
R14734 T20624 T20622 arg1Of conditions,the
R14735 T20624 T20623 arg1Of conditions,following
R14736 T20627 T20626 arg1Of °C,95
R14737 T20627 T20628 arg1Of °C,for
R14738 T20627 T20631 arg1Of °C,followed
R14739 T20627 T20655 arg1Of °C,ending
R14740 T20630 T20628 arg2Of min,for
R14741 T20630 T20629 arg1Of min,15
R14742 T20631 T20632 arg1Of followed,by
R14743 T20631 T20635 arg1Of followed,at
R14744 T20631 T20638 arg1Of followed,for
R14745 T20631 T20641 arg1Of followed,","
R14746 T20631 T20651 arg1Of followed,for
R14747 T20631 T20654 arg1Of followed,","
R14748 T20631 T20655 modOf followed,ending
R14749 T20634 T20632 arg2Of cycles,by
R14750 T20634 T20633 arg1Of cycles,30
R14751 T20637 T20635 arg2Of °C,at
R14752 T20637 T20636 arg1Of °C,95
R14753 T20640 T20638 arg2Of s,for
R14754 T20640 T20639 arg1Of s,30
R14755 T20643 T20642 arg1Of °C,60
R14756 T20643 T20644 arg1Of °C,for
R14757 T20643 T20648 arg1Of °C,and
R14758 T20646 T20644 arg2Of s,for
R14759 T20646 T20645 arg1Of s,30
R14760 T20648 T20631 arg2Of and,followed
R14761 T20648 T20647 arg1Of and,","
R14762 T20650 T20648 arg2Of °C,and
R14763 T20650 T20649 arg1Of °C,72
R14764 T20653 T20651 arg2Of s,for
R14765 T20653 T20652 arg1Of s,45
R14766 T20655 T20656 arg1Of ending,with
R14767 T20655 T20663 arg1Of ending,for
R14768 T20659 T20656 arg2Of extension,with
R14769 T20659 T20657 arg1Of extension,a
R14770 T20659 T20658 arg1Of extension,final
R14771 T20659 T20660 arg1Of extension,at
R14772 T20662 T20660 arg2Of °C,at
R14773 T20662 T20661 arg1Of °C,72
R14774 T20665 T20663 arg2Of min,for
R14775 T20665 T20664 arg1Of min,5

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T20360 1198-1200 Protein denotes ɛy
T20359 1093-1095 Protein denotes ɛy
T20358 739-743 Protein denotes Sox6
T20357 568-577 Protein denotes protein A

UBERON-AE

Id Subject Object Predicate Lexical cue
T20340 1458-1467 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extension
T20339 80-85 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T20352 332-337 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-MF

Id Subject Object Predicate Lexical cue
T20361 878-886 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T20363 86-91 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20362 55-60 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T20370 878-886 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T20369 878-886 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T20368 868-877 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T20367 414-431 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T20366 410-431 http://purl.obolibrary.org/obo/GO_0097522 denotes DNA-protein complexes
T20365 410-431 http://purl.obolibrary.org/obo/GO_0032993 denotes DNA-protein complexes
T20364 410-431 http://purl.obolibrary.org/obo/GO_0001114 denotes DNA-protein complexes

sentences

Id Subject Object Predicate Lexical cue
T20351 1344-1487 Sentence denotes 95 °C for 15 min followed by 30 cycles at 95 °C for 30 s, 60 °C for 30 s, and 72 °C for 45 s, ending with a final extension at 72 °C for 5 min.
T20350 1294-1343 Sentence denotes PCR was performed under the following conditions:
T20349 1068-1293 Sentence denotes PCR amplification of the ɛy promoter was performed and yielded a 172-bp amplicon, corresponding to nucleotides −31 to +140 of the ɛy promoter (primers MHB1688, 5′CGAAGAATAAAAGGCCACCA3′; and MHB1689, 5′GCTTCACCACCAACCTCTTC3′).
T20348 988-1067 Sentence denotes Input DNA or immunoprecipitated DNA was used as a template in the PCR reaction.
T20347 864-987 Sentence denotes The chromatin-antibody complexes were eluted, and the DNA protein cross-links were reversed with 5 M NaCl at 65 °C for 4 h.
T20346 651-863 Sentence denotes Following preclearing, the samples were split into thirds: one sample treated with anti-Sox6, a second treated with normal rabbit IgG, and the third sample without Ab. The last two were used as negative controls.
T20345 466-650 Sentence denotes One-tenth of the sample was set aside for input control, and the remaining sample was precleared with protein A-Sepharose (Amersham Biosciences, Piscataway, New Jersey, United States).
T20344 410-465 Sentence denotes DNA-protein complexes were sonicated to 200 and 600 bp.
T20343 40-409 Sentence denotes Cells from MEL cells (4 × 107) or fetal liver cells from three 15.5-dpc WT mice were treated with 1% formaldehyde for 10 min at 37 °C, rinsed in ice-cold 1× Hanks' balanced salt solution with 0.1% EDTA containing protease inhibitors, collected by centrifugation at 4 °C, resuspended in a SDS lysis buffer containing protease inhibitors, and incubated on ice for 10 min.
T20342 0-39 Sentence denotes As described by Nouzova [53], in brief:
T331 0-39 Sentence denotes As described by Nouzova [53], in brief:
T332 40-409 Sentence denotes Cells from MEL cells (4 × 107) or fetal liver cells from three 15.5-dpc WT mice were treated with 1% formaldehyde for 10 min at 37 °C, rinsed in ice-cold 1× Hanks' balanced salt solution with 0.1% EDTA containing protease inhibitors, collected by centrifugation at 4 °C, resuspended in a SDS lysis buffer containing protease inhibitors, and incubated on ice for 10 min.
T333 410-465 Sentence denotes DNA-protein complexes were sonicated to 200 and 600 bp.
T334 466-650 Sentence denotes One-tenth of the sample was set aside for input control, and the remaining sample was precleared with protein A-Sepharose (Amersham Biosciences, Piscataway, New Jersey, United States).
T335 651-818 Sentence denotes Following preclearing, the samples were split into thirds: one sample treated with anti-Sox6, a second treated with normal rabbit IgG, and the third sample without Ab.
T336 819-863 Sentence denotes The last two were used as negative controls.
T337 864-987 Sentence denotes The chromatin-antibody complexes were eluted, and the DNA protein cross-links were reversed with 5 M NaCl at 65 °C for 4 h.
T338 988-1067 Sentence denotes Input DNA or immunoprecipitated DNA was used as a template in the PCR reaction.
T339 1068-1293 Sentence denotes PCR amplification of the ɛy promoter was performed and yielded a 172-bp amplicon, corresponding to nucleotides −31 to +140 of the ɛy promoter (primers MHB1688, 5′CGAAGAATAAAAGGCCACCA3′; and MHB1689, 5′GCTTCACCACCAACCTCTTC3′).
T340 1294-1343 Sentence denotes PCR was performed under the following conditions:
T341 1344-1487 Sentence denotes 95 °C for 15 min followed by 30 cycles at 95 °C for 30 s, 60 °C for 30 s, and 72 °C for 45 s, ending with a final extension at 72 °C for 5 min.

simple1

Id Subject Object Predicate Lexical cue
T20381 1198-1200 Protein denotes ɛy
T20380 1093-1095 Protein denotes ɛy
T20379 739-743 Protein denotes Sox6
T20378 568-577 Protein denotes protein A

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T21019 568-577 Protein denotes protein A
T21022 1198-1200 Protein denotes ɛy
T21021 1093-1095 Protein denotes ɛy
T21020 739-743 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T20669 1198-1200 Protein denotes ɛy
T20668 1093-1095 Protein denotes ɛy
T20667 739-743 Protein denotes Sox6
T20666 568-577 Protein denotes protein A

DLUT931

Id Subject Object Predicate Lexical cue
T20673 1198-1200 Protein denotes ɛy
T20672 1093-1095 Protein denotes ɛy
T20671 739-743 Protein denotes Sox6
T20670 568-577 Protein denotes protein A

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T21018 914-942 Localization denotes the DNA protein cross-links
T21017 33-45 Entity denotes brief: Cells
T21016 1001-1023 Entity denotes immunoprecipitated DNA
T21015 97-119 Protein denotes three 15.5-dpc WT mice
T21014 983-997 Entity denotes 4 h. Input DNA
T21013 734-785 Protein denotes anti-Sox6, a second treated with normal rabbit IgG,
T21012 1164-1209 Entity denotes to nucleotides −31 to +140 of the ɛy promoter
T21011 878-886 Protein denotes antibody
T21010 185-193 Entity denotes ice-cold
T21009 391-397 Entity denotes on ice
T21008 1050-1066 Protein denotes the PCR reaction
T21007 138-164 Entity denotes 1% formaldehyde for 10 min
T21006 864-896 Entity denotes The chromatin-antibody complexes
T21005 961-975 Entity denotes 5 M NaCl at 65
T21004 868-877 Entity denotes chromatin
T21003 918-921 Entity denotes DNA
T21002 356-375 Protein denotes protease inhibitors
T21001 237-241 Entity denotes EDTA
T21000 1068-1071 Protein denotes PCR
T20999 914-941 Protein denotes the DNA protein cross-links
T20998 1294-1297 Protein denotes PCR
T20997 1198-1200 Protein denotes ɛy
T20996 1093-1095 Protein denotes ɛy
T20995 1086-1104 Entity denotes of the ɛy promoter
T20994 578-587 Entity denotes Sepharose
T20993 326-376 Protein denotes a SDS lysis buffer containing protease inhibitors,
T20992 232-272 Protein denotes 0.1% EDTA containing protease inhibitors
T20991 410-431 Entity denotes DNA-protein complexes
T20990 1194-1209 Entity denotes the ɛy promoter
R15085 T20990 T20997 partOf the ɛy promoter,ɛy
R15086 T20995 T20996 partOf of the ɛy promoter,ɛy
R15087 T20999 T21018 themeOf the DNA protein cross-links,the DNA protein cross-links
R15088 T21003 T21018 locationOf DNA,the DNA protein cross-links

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20986 1486-1487 . denotes .
T20985 1483-1486 NN denotes min
T20984 1481-1482 CD denotes 5
T20983 1477-1480 IN denotes for
T20982 1475-1476 NNP denotes C
T20981 1474-1475 CD denotes °
T20980 1471-1473 CD denotes 72
T20979 1468-1470 IN denotes at
T20978 1458-1467 NN denotes extension
T20977 1452-1457 JJ denotes final
T20976 1450-1451 DT denotes a
T20975 1445-1449 IN denotes with
T20974 1438-1444 VBG denotes ending
T20973 1436-1437 , denotes ,
T20972 1435-1436 PRP denotes s
T20971 1432-1434 CD denotes 45
T20970 1428-1431 IN denotes for
T20969 1426-1427 NNP denotes C
T20968 1425-1426 NN denotes °
T20967 1422-1424 CD denotes 72
T20966 1418-1421 CC denotes and
T20965 1416-1417 , denotes ,
T20964 1415-1416 PRP denotes s
T20963 1412-1414 CD denotes 30
T20962 1408-1411 IN denotes for
T20961 1406-1407 NNP denotes C
T20960 1405-1406 NN denotes °
T20959 1402-1404 CD denotes 60
T20958 1400-1401 , denotes ,
T20957 1399-1400 PRP denotes s
T20956 1396-1398 CD denotes 30
T20955 1392-1395 IN denotes for
T20954 1390-1391 NNP denotes C
T20953 1389-1390 CD denotes °
T20952 1386-1388 CD denotes 95
T20951 1383-1385 IN denotes at
T20950 1376-1382 NNS denotes cycles
T20949 1373-1375 CD denotes 30
T20948 1370-1372 IN denotes by
T20947 1361-1369 VBN denotes followed
T20946 1357-1360 NN denotes min
T20945 1354-1356 CD denotes 15
T20944 1350-1353 IN denotes for
T20943 1348-1349 NNP denotes C
T20942 1347-1348 NN denotes °
T20941 1344-1346 CD denotes 95
T20940 1342-1343 : denotes :
T20939 1332-1342 NNS denotes conditions
T20938 1322-1331 JJ denotes following
T20937 1318-1321 DT denotes the
T20936 1312-1317 IN denotes under
T20935 1302-1311 VBN denotes performed
T20934 1298-1301 VBD denotes was
T20933 1294-1297 NNP denotes PCR
T20932 1292-1293 . denotes .
T20931 1291-1292 -RRB- denotes )
T20930 1290-1291 NNP denotes ′
T20929 1269-1290 NNP denotes GCTTCACCACCAACCTCTTC3
T20928 1268-1269 NN denotes ′
T20927 1267-1268 CD denotes 5
T20926 1265-1266 , denotes ,
T20925 1258-1265 NNP denotes MHB1689
T20924 1254-1257 CC denotes and
T20923 1252-1253 : denotes ;
T20922 1251-1252 NN denotes ′
T20921 1230-1251 CD denotes CGAAGAATAAAAGGCCACCA3
T20920 1229-1230 NN denotes ′
T20919 1228-1229 CD denotes 5
T20918 1226-1227 , denotes ,
T20917 1219-1226 NNP denotes MHB1688
T20916 1211-1218 NNS denotes primers
T20915 1210-1211 -LRB- denotes (
T20914 1201-1209 NN denotes promoter
T20913 1198-1200 JJ denotes ɛy
T20912 1194-1197 DT denotes the
T20911 1191-1193 IN denotes of
T20910 1186-1190 CD denotes +140
T20909 1183-1185 TO denotes to
T20908 1180-1182 CD denotes 31
T20907 1179-1180 VBP denotes −
T20906 1167-1178 NNS denotes nucleotides
T20905 1164-1166 TO denotes to
T20904 1150-1163 JJ denotes corresponding
T20903 1148-1149 , denotes ,
T20902 1140-1148 NN denotes amplicon
T20901 1133-1139 JJ denotes 172-bp
T20900 1131-1132 DT denotes a
T20899 1123-1130 VBD denotes yielded
T20898 1119-1122 CC denotes and
T20897 1109-1118 VBN denotes performed
T20896 1105-1108 VBD denotes was
T20895 1096-1104 NN denotes promoter
T20894 1093-1095 JJ denotes ɛy
T20893 1089-1092 DT denotes the
T20892 1086-1088 IN denotes of
T20891 1072-1085 NN denotes amplification
T20890 1068-1071 NNP denotes PCR
T20889 1066-1067 . denotes .
T20888 1058-1066 NN denotes reaction
T20887 1054-1057 NNP denotes PCR
T20886 1050-1053 DT denotes the
T20885 1047-1049 IN denotes in
T20884 1038-1046 NN denotes template
T20883 1036-1037 DT denotes a
T20882 1033-1035 IN denotes as
T20881 1028-1032 VBN denotes used
T20880 1024-1027 VBD denotes was
T20879 1020-1023 NN denotes DNA
T20878 1001-1019 JJ denotes immunoprecipitated
T20877 998-1000 CC denotes or
T20876 994-997 NNP denotes DNA
T20875 988-993 NNP denotes Input
T20874 985-987 NN denotes h.
T20873 983-984 CD denotes 4
T20872 979-982 IN denotes for
T20871 977-978 NNP denotes C
T20870 976-977 CD denotes °
T20869 973-975 CD denotes 65
T20868 970-972 IN denotes at
T20867 965-969 NNP denotes NaCl
T20866 963-964 NNP denotes M
T20865 961-962 CD denotes 5
T20864 956-960 IN denotes with
T20863 947-955 VBN denotes reversed
T20862 942-946 VBD denotes were
T20861 930-941 NNS denotes cross-links
T20860 922-929 NN denotes protein
T20859 918-921 NNP denotes DNA
T20858 914-917 DT denotes the
T20857 910-913 CC denotes and
T20856 908-909 , denotes ,
T20855 902-908 VBN denotes eluted
T20854 897-901 VBD denotes were
T20853 887-896 NNS denotes complexes
T20852 868-886 JJ denotes chromatin-antibody
T20851 864-867 DT denotes The
T20850 862-863 . denotes .
T20849 854-862 NNS denotes controls
T20848 845-853 JJ denotes negative
T20847 842-844 IN denotes as
T20846 837-841 VBN denotes used
T20845 832-836 VBD denotes were
T20844 828-831 CD denotes two
T20843 823-827 JJ denotes last
T20842 819-822 DT denotes The
T20841 817-818 . denotes .
T20840 815-817 NNP denotes Ab
T20839 807-814 IN denotes without
T20838 800-806 NN denotes sample
T20837 794-799 JJ denotes third
T20836 790-793 DT denotes the
T20835 786-789 CC denotes and
T20834 784-785 , denotes ,
T20833 781-784 NNP denotes IgG
T20832 774-780 NN denotes rabbit
T20831 767-773 JJ denotes normal
T20830 762-766 IN denotes with
T20829 754-761 VBN denotes treated
T20828 747-753 JJ denotes second
T20827 745-746 DT denotes a
T20826 743-744 , denotes ,
T20825 734-743 JJ denotes anti-Sox6
T20824 729-733 IN denotes with
T20823 721-728 VBN denotes treated
T20822 714-720 NN denotes sample
T20821 710-713 CD denotes one
T20820 708-709 : denotes :
T20819 702-708 NNS denotes thirds
T20818 697-701 IN denotes into
T20817 691-696 VBN denotes split
T20816 686-690 VBD denotes were
T20815 678-685 NNS denotes samples
T20814 674-677 DT denotes the
T20813 672-673 , denotes ,
T20812 661-672 NN denotes preclearing
T20811 651-660 VBG denotes Following
T20810 649-650 . denotes .
T20809 648-649 -RRB- denotes )
T20808 642-648 NNPS denotes States
T20807 635-641 NNP denotes United
T20806 633-634 , denotes ,
T20805 627-633 NNP denotes Jersey
T20804 623-626 NNP denotes New
T20689 30-32 IN denotes in
T20688 28-29 , denotes ,
T20687 27-28 NNP denotes ]
T20686 25-27 CD denotes 53
T20685 24-25 NNP denotes [
T20684 16-23 NNP denotes Nouzova
T20683 13-15 IN denotes by
T20682 3-12 VBN denotes described
T20681 0-2 IN denotes As
T20803 621-622 , denotes ,
T20802 611-621 NNP denotes Piscataway
T20801 609-610 , denotes ,
T20800 598-609 NNP denotes Biosciences
T20799 589-597 NNP denotes Amersham
T20798 588-589 -LRB- denotes (
T20797 576-587 JJ denotes A-Sepharose
T20796 568-575 NN denotes protein
T20795 563-567 IN denotes with
T20794 552-562 VBN denotes precleared
T20793 548-551 VBD denotes was
T20792 541-547 NN denotes sample
T20791 531-540 VBG denotes remaining
T20790 527-530 DT denotes the
T20789 523-526 CC denotes and
T20788 521-522 , denotes ,
T20787 514-521 NN denotes control
T20786 508-513 NN denotes input
T20785 504-507 IN denotes for
T20784 498-503 RB denotes aside
T20783 494-497 VBN denotes set
T20782 490-493 VBD denotes was
T20781 483-489 NN denotes sample
T20780 479-482 DT denotes the
T20779 476-478 IN denotes of
T20778 466-475 NN denotes One-tenth
T20777 464-465 . denotes .
T20776 462-464 NN denotes bp
T20775 458-461 CD denotes 600
T20774 454-457 CC denotes and
T20773 450-453 CD denotes 200
T20772 447-449 TO denotes to
T20771 437-446 VBN denotes sonicated
T20770 432-436 VBD denotes were
T20769 422-431 NNS denotes complexes
T20768 410-421 JJ denotes DNA-protein
T20767 408-409 . denotes .
T20766 405-408 NN denotes min
T20765 402-404 CD denotes 10
T20764 398-401 IN denotes for
T20763 394-397 NN denotes ice
T20762 391-393 IN denotes on
T20761 381-390 VBD denotes incubated
T20760 377-380 CC denotes and
T20759 375-376 , denotes ,
T20758 365-375 NNS denotes inhibitors
T20757 356-364 NN denotes protease
T20756 345-355 VBG denotes containing
T20755 338-344 NN denotes buffer
T20754 332-337 NN denotes lysis
T20753 328-331 NNP denotes SDS
T20752 326-327 DT denotes a
T20751 323-325 IN denotes in
T20750 311-322 VBD denotes resuspended
T20749 309-310 , denotes ,
T20748 308-309 NNP denotes C
T20747 307-308 CD denotes °
T20746 305-306 CD denotes 4
T20745 302-304 IN denotes at
T20744 287-301 NN denotes centrifugation
T20743 284-286 IN denotes by
T20742 274-283 VBN denotes collected
T20741 272-273 , denotes ,
T20740 262-272 NNS denotes inhibitors
T20739 253-261 NN denotes protease
T20738 242-252 VBG denotes containing
T20737 237-241 NNP denotes EDTA
T20736 235-236 NN denotes %
T20735 232-235 CD denotes 0.1
T20734 227-231 IN denotes with
T20733 218-226 NN denotes solution
T20732 213-217 NN denotes salt
T20731 204-212 JJ denotes balanced
T20730 202-203 POS denotes '
T20729 197-202 NNP denotes Hanks
T20728 195-196 CD denotes ×
T20727 194-195 CD denotes 1
T20726 185-193 JJ denotes ice-cold
T20725 182-184 IN denotes in
T20724 175-181 VBD denotes rinsed
T20723 173-174 , denotes ,
T20722 172-173 NNP denotes C
T20721 171-172 CD denotes °
T20720 168-170 CD denotes 37
T20719 165-167 IN denotes at
T20718 161-164 NN denotes min
T20717 158-160 CD denotes 10
T20716 154-157 IN denotes for
T20715 141-153 NN denotes formaldehyde
T20714 139-140 NN denotes %
T20713 138-139 CD denotes 1
T20712 133-137 IN denotes with
T20711 125-132 VBN denotes treated
T20710 120-124 VBD denotes were
T20709 115-119 NNS denotes mice
T20708 112-114 NNP denotes WT
T20707 103-111 JJ denotes 15.5-dpc
T20706 97-102 CD denotes three
T20705 92-96 IN denotes from
T20704 86-91 NNS denotes cells
T20703 80-85 NN denotes liver
T20702 74-79 JJ denotes fetal
T20701 71-73 CC denotes or
T20700 69-70 -RRB- denotes )
T20699 66-69 CD denotes 107
T20698 64-65 CD denotes ×
T20697 62-63 CD denotes 4
T20696 61-62 -LRB- denotes (
T20695 55-60 NNS denotes cells
T20694 51-54 NNP denotes MEL
T20693 46-50 IN denotes from
T20692 40-45 NNS denotes Cells
T20691 38-39 : denotes :
T20690 33-38 NN denotes brief
R14779 T20681 T20682 mark As,described
R14780 T20682 T20711 advcl described,treated
R14781 T20683 T20682 agent by,described
R14782 T20684 T20685 compound Nouzova,[
R14783 T20685 T20687 nmod [,]
R14784 T20686 T20687 nummod 53,]
R14785 T20687 T20683 pobj ],by
R14786 T20688 T20682 punct ",",described
R14787 T20689 T20682 prep in,described
R14788 T20690 T20689 pobj brief,in
R14789 T20691 T20711 punct :,treated
R14790 T20692 T20711 nsubjpass Cells,treated
R14791 T20693 T20692 prep from,Cells
R14792 T20694 T20695 compound MEL,cells
R14793 T20695 T20693 pobj cells,from
R14794 T20696 T20695 punct (,cells
R14795 T20697 T20699 nummod 4,107
R14796 T20698 T20699 nummod ×,107
R14797 T20699 T20695 appos 107,cells
R14798 T20700 T20699 punct ),107
R14799 T20701 T20699 cc or,107
R14800 T20702 T20704 amod fetal,cells
R14801 T20703 T20704 compound liver,cells
R14802 T20704 T20711 nsubjpass cells,treated
R14803 T20705 T20704 prep from,cells
R14804 T20706 T20709 nummod three,mice
R14805 T20707 T20709 amod 15.5-dpc,mice
R14806 T20708 T20709 compound WT,mice
R14807 T20709 T20705 pobj mice,from
R14808 T20710 T20711 auxpass were,treated
R14809 T20711 T20711 ROOT treated,treated
R14810 T20712 T20711 prep with,treated
R14811 T20713 T20714 nummod 1,%
R14812 T20714 T20715 compound %,formaldehyde
R14813 T20715 T20712 pobj formaldehyde,with
R14814 T20716 T20711 prep for,treated
R14815 T20717 T20718 nummod 10,min
R14816 T20718 T20716 pobj min,for
R14817 T20719 T20711 prep at,treated
R14818 T20720 T20721 nummod 37,°
R14819 T20721 T20722 nummod °,C
R14820 T20722 T20719 pobj C,at
R14821 T20723 T20711 punct ",",treated
R14822 T20724 T20711 conj rinsed,treated
R14823 T20725 T20724 prep in,rinsed
R14824 T20726 T20729 amod ice-cold,Hanks
R14825 T20727 T20728 nummod 1,×
R14826 T20728 T20729 compound ×,Hanks
R14827 T20729 T20733 poss Hanks,solution
R14828 T20730 T20729 case ',Hanks
R14829 T20731 T20733 amod balanced,solution
R14830 T20732 T20733 compound salt,solution
R14831 T20733 T20725 pobj solution,in
R14832 T20734 T20733 prep with,solution
R14833 T20735 T20736 nummod 0.1,%
R14834 T20736 T20737 compound %,EDTA
R14835 T20737 T20738 nsubj EDTA,containing
R14836 T20738 T20734 pcomp containing,with
R14837 T20739 T20740 compound protease,inhibitors
R14838 T20740 T20738 dobj inhibitors,containing
R14839 T20741 T20740 punct ",",inhibitors
R14840 T20742 T20740 acl collected,inhibitors
R14841 T20743 T20742 agent by,collected
R14842 T20744 T20743 pobj centrifugation,by
R14843 T20745 T20742 prep at,collected
R14844 T20746 T20747 nummod 4,°
R14845 T20747 T20748 nummod °,C
R14846 T20748 T20745 pobj C,at
R14847 T20749 T20748 punct ",",C
R14848 T20750 T20724 conj resuspended,rinsed
R14849 T20751 T20750 prep in,resuspended
R14850 T20752 T20755 det a,buffer
R14851 T20753 T20755 compound SDS,buffer
R14852 T20754 T20755 compound lysis,buffer
R14853 T20755 T20751 pobj buffer,in
R14854 T20756 T20755 acl containing,buffer
R14855 T20757 T20758 compound protease,inhibitors
R14856 T20758 T20756 dobj inhibitors,containing
R14857 T20759 T20750 punct ",",resuspended
R14858 T20760 T20750 cc and,resuspended
R14859 T20761 T20750 conj incubated,resuspended
R14860 T20762 T20761 prep on,incubated
R14861 T20763 T20762 pobj ice,on
R14862 T20764 T20761 prep for,incubated
R14863 T20765 T20766 nummod 10,min
R14864 T20766 T20764 pobj min,for
R14865 T20767 T20711 punct .,treated
R14866 T20768 T20769 amod DNA-protein,complexes
R14867 T20769 T20771 nsubjpass complexes,sonicated
R14868 T20770 T20771 auxpass were,sonicated
R14869 T20771 T20771 ROOT sonicated,sonicated
R14870 T20772 T20771 prep to,sonicated
R14871 T20773 T20776 nummod 200,bp
R14872 T20774 T20773 cc and,200
R14873 T20775 T20773 conj 600,200
R14874 T20776 T20772 pobj bp,to
R14875 T20777 T20771 punct .,sonicated
R14876 T20778 T20783 nsubjpass One-tenth,set
R14877 T20779 T20778 prep of,One-tenth
R14878 T20780 T20781 det the,sample
R14879 T20781 T20779 pobj sample,of
R14880 T20782 T20783 auxpass was,set
R14881 T20783 T20783 ROOT set,set
R14882 T20784 T20783 advmod aside,set
R14883 T20785 T20783 prep for,set
R14884 T20786 T20787 compound input,control
R14885 T20787 T20785 pobj control,for
R14886 T20788 T20783 punct ",",set
R14887 T20789 T20783 cc and,set
R14888 T20790 T20792 det the,sample
R14889 T20791 T20792 amod remaining,sample
R14890 T20792 T20794 nsubjpass sample,precleared
R14891 T20793 T20794 auxpass was,precleared
R14892 T20794 T20783 conj precleared,set
R14893 T20795 T20794 prep with,precleared
R14894 T20796 T20797 compound protein,A-Sepharose
R14895 T20797 T20795 pobj A-Sepharose,with
R14896 T20798 T20800 punct (,Biosciences
R14897 T20799 T20800 compound Amersham,Biosciences
R14898 T20800 T20797 appos Biosciences,A-Sepharose
R14899 T20801 T20800 punct ",",Biosciences
R14900 T20802 T20800 npadvmod Piscataway,Biosciences
R14901 T20803 T20802 punct ",",Piscataway
R14902 T20804 T20805 compound New,Jersey
R14903 T20805 T20802 conj Jersey,Piscataway
R14904 T20806 T20805 punct ",",Jersey
R14905 T20807 T20808 compound United,States
R14906 T20808 T20802 appos States,Piscataway
R14907 T20809 T20802 punct ),Piscataway
R14908 T20810 T20794 punct .,precleared
R14909 T20811 T20817 prep Following,split
R14910 T20812 T20811 pobj preclearing,Following
R14911 T20813 T20817 punct ",",split
R14912 T20814 T20815 det the,samples
R14913 T20815 T20817 nsubjpass samples,split
R14914 T20816 T20817 auxpass were,split
R14915 T20817 T20817 ROOT split,split
R14916 T20818 T20817 prep into,split
R14917 T20819 T20818 pobj thirds,into
R14918 T20820 T20817 punct :,split
R14919 T20821 T20822 nummod one,sample
R14920 T20822 T20829 nsubjpass sample,treated
R14921 T20823 T20822 acl treated,sample
R14922 T20824 T20823 prep with,treated
R14923 T20825 T20824 pobj anti-Sox6,with
R14924 T20826 T20825 punct ",",anti-Sox6
R14925 T20827 T20828 det a,second
R14926 T20828 T20829 amod second,treated
R14927 T20829 T20817 conj treated,split
R14928 T20830 T20829 prep with,treated
R14929 T20831 T20832 amod normal,rabbit
R14930 T20832 T20833 compound rabbit,IgG
R14931 T20833 T20830 pobj IgG,with
R14932 T20834 T20829 punct ",",treated
R14933 T20835 T20829 cc and,treated
R14934 T20836 T20838 det the,sample
R14935 T20837 T20838 amod third,sample
R14936 T20838 T20829 conj sample,treated
R14937 T20839 T20838 prep without,sample
R14938 T20840 T20839 pobj Ab,without
R14939 T20841 T20829 punct .,treated
R14940 T20842 T20844 det The,two
R14941 T20843 T20844 amod last,two
R14942 T20844 T20846 nsubjpass two,used
R14943 T20845 T20846 auxpass were,used
R14944 T20846 T20846 ROOT used,used
R14945 T20847 T20846 prep as,used
R14946 T20848 T20849 amod negative,controls
R14947 T20849 T20847 pobj controls,as
R14948 T20850 T20846 punct .,used
R14949 T20851 T20853 det The,complexes
R14950 T20852 T20853 amod chromatin-antibody,complexes
R14951 T20853 T20855 nsubjpass complexes,eluted
R14952 T20854 T20855 auxpass were,eluted
R14953 T20855 T20855 ROOT eluted,eluted
R14954 T20856 T20855 punct ",",eluted
R14955 T20857 T20855 cc and,eluted
R14956 T20858 T20860 det the,protein
R14957 T20859 T20860 compound DNA,protein
R14958 T20860 T20861 compound protein,cross-links
R14959 T20861 T20863 nsubjpass cross-links,reversed
R14960 T20862 T20863 auxpass were,reversed
R14961 T20863 T20855 conj reversed,eluted
R14962 T20864 T20863 prep with,reversed
R14963 T20865 T20867 nummod 5,NaCl
R14964 T20866 T20867 compound M,NaCl
R14965 T20867 T20864 pobj NaCl,with
R14966 T20868 T20863 prep at,reversed
R14967 T20869 T20871 nummod 65,C
R14968 T20870 T20871 nummod °,C
R14969 T20871 T20868 pobj C,at
R14970 T20872 T20863 prep for,reversed
R14971 T20873 T20874 nummod 4,h.
R14972 T20874 T20876 compound h.,DNA
R14973 T20875 T20876 compound Input,DNA
R14974 T20876 T20872 pobj DNA,for
R14975 T20877 T20876 cc or,DNA
R14976 T20878 T20879 amod immunoprecipitated,DNA
R14977 T20879 T20876 conj DNA,DNA
R14978 T20880 T20881 auxpass was,used
R14979 T20881 T20863 conj used,reversed
R14980 T20882 T20881 prep as,used
R14981 T20883 T20884 det a,template
R14982 T20884 T20882 pobj template,as
R14983 T20885 T20884 prep in,template
R14984 T20886 T20888 det the,reaction
R14985 T20887 T20888 compound PCR,reaction
R14986 T20888 T20885 pobj reaction,in
R14987 T20889 T20863 punct .,reversed
R14988 T20890 T20891 compound PCR,amplification
R14989 T20891 T20897 nsubjpass amplification,performed
R14990 T20892 T20891 prep of,amplification
R14991 T20893 T20895 det the,promoter
R14992 T20894 T20895 amod ɛy,promoter
R14993 T20895 T20892 pobj promoter,of
R14994 T20896 T20897 auxpass was,performed
R14995 T20897 T20897 ROOT performed,performed
R14996 T20898 T20897 cc and,performed
R14997 T20899 T20897 conj yielded,performed
R14998 T20900 T20902 det a,amplicon
R14999 T20901 T20902 amod 172-bp,amplicon
R15000 T20902 T20899 dobj amplicon,yielded
R15001 T20903 T20902 punct ",",amplicon
R15002 T20904 T20902 amod corresponding,amplicon
R15003 T20905 T20907 aux to,−
R15004 T20906 T20905 pobj nucleotides,to
R15005 T20907 T20904 xcomp −,corresponding
R15006 T20908 T20910 quantmod 31,+140
R15007 T20909 T20910 quantmod to,+140
R15008 T20910 T20907 dobj +140,−
R15009 T20911 T20910 prep of,+140
R15010 T20912 T20914 det the,promoter
R15011 T20913 T20914 amod ɛy,promoter
R15012 T20914 T20911 pobj promoter,of
R15013 T20915 T20916 punct (,primers
R15014 T20916 T20914 appos primers,promoter
R15015 T20917 T20922 nmod MHB1688,′
R15016 T20918 T20917 punct ",",MHB1688
R15017 T20919 T20920 nummod 5,′
R15018 T20920 T20922 nmod ′,′
R15019 T20921 T20922 nummod CGAAGAATAAAAGGCCACCA3,′
R15020 T20922 T20916 dobj ′,primers
R15021 T20923 T20916 punct ;,primers
R15022 T20924 T20916 cc and,primers
R15023 T20925 T20916 conj MHB1689,primers
R15024 T20926 T20925 punct ",",MHB1689
R15025 T20927 T20928 nummod 5,′
R15026 T20928 T20930 compound ′,′
R15027 T20929 T20930 compound GCTTCACCACCAACCTCTTC3,′
R15028 T20930 T20925 conj ′,MHB1689
R15029 T20931 T20930 punct ),′
R15030 T20932 T20897 punct .,performed
R15031 T20933 T20935 nsubjpass PCR,performed
R15032 T20934 T20935 auxpass was,performed
R15033 T20935 T20935 ROOT performed,performed
R15034 T20936 T20935 prep under,performed
R15035 T20937 T20939 det the,conditions
R15036 T20938 T20939 amod following,conditions
R15037 T20939 T20936 pobj conditions,under
R15038 T20940 T20939 punct :,conditions
R15039 T20941 T20942 nummod 95,°
R15040 T20942 T20943 compound °,C
R15041 T20943 T20939 appos C,conditions
R15042 T20944 T20943 prep for,C
R15043 T20945 T20946 nummod 15,min
R15044 T20946 T20944 pobj min,for
R15045 T20947 T20939 acl followed,conditions
R15046 T20948 T20947 agent by,followed
R15047 T20949 T20950 nummod 30,cycles
R15048 T20950 T20948 pobj cycles,by
R15049 T20951 T20950 prep at,cycles
R15050 T20952 T20951 pobj 95,at
R15051 T20953 T20954 nummod °,C
R15052 T20954 T20950 conj C,cycles
R15053 T20955 T20947 prep for,followed
R15054 T20956 T20955 pobj 30,for
R15055 T20957 T20939 appos s,conditions
R15056 T20958 T20935 punct ",",performed
R15057 T20959 T20960 nummod 60,°
R15058 T20960 T20961 compound °,C
R15059 T20961 T20935 npadvmod C,performed
R15060 T20962 T20935 prep for,performed
R15061 T20963 T20962 pobj 30,for
R15062 T20964 T20935 dep s,performed
R15063 T20965 T20935 punct ",",performed
R15064 T20966 T20935 cc and,performed
R15065 T20967 T20969 nummod 72,C
R15066 T20968 T20969 compound °,C
R15067 T20969 T20935 conj C,performed
R15068 T20970 T20969 prep for,C
R15069 T20971 T20970 pobj 45,for
R15070 T20972 T20969 appos s,C
R15071 T20973 T20969 punct ",",C
R15072 T20974 T20935 advcl ending,performed
R15073 T20975 T20974 prep with,ending
R15074 T20976 T20978 det a,extension
R15075 T20977 T20978 amod final,extension
R15076 T20978 T20975 pobj extension,with
R15077 T20979 T20978 prep at,extension
R15078 T20980 T20981 nummod 72,°
R15079 T20981 T20979 pobj °,at
R15080 T20982 T20978 npadvmod C,extension
R15081 T20983 T20978 prep for,extension
R15082 T20984 T20985 nummod 5,min
R15083 T20985 T20983 pobj min,for
R15084 T20986 T20935 punct .,performed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T20377 868-886 Protein denotes chromatin-antibody
T20376 781-784 Protein denotes IgG
T20375 739-743 Protein denotes Sox6

testone

Id Subject Object Predicate Lexical cue
T20330 1198-1200 Protein denotes ɛy
T20329 1093-1095 Protein denotes ɛy
T20328 739-743 Protein denotes Sox6
T20327 568-577 Protein denotes protein A

test3

Id Subject Object Predicate Lexical cue
T20338 1198-1200 Protein denotes ɛy
T20337 1093-1095 Protein denotes ɛy
T20336 739-743 Protein denotes Sox6
T20335 568-577 Protein denotes protein A
T20334 1198-1200 Protein denotes ɛy
T20333 1093-1095 Protein denotes ɛy
T20332 739-743 Protein denotes Sox6
T20331 568-577 Protein denotes protein A